FC881921
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC881921 vs. ExPASy Swiss-Prot
Match: TF3B_SCHPO (Transcription factor IIIB 60 kDa subunit OS=Schizosaccharomyces pombe GN=brf1 PE=1 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 3.924e-19 Identity = 58/175 (33.14%), Postives = 89/175 (50.86%), Query Frame = 3 Query: 192 IAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITV*YCLPIFYFDLVWALGLIGDLKS*NMYDIDLQTGRKPTGLCGAALYISALTHGLKFSKSDIVKI 713 +A+ NF KGRR++ V ASCLY+ CR +LIDFS+ L INV++LG+ +L+LC+VL L +DPS+++ +F L G +V + A ++A M RDW +Q GR+P G+CGA L I+A + + S ++V + Sbjct: 120 LAINNNFIKGRRSQYVVASCLYIVCRISKTSHMLIDFSDILQINVFKLGSTFLKLCRVL-----RPNLPLLDPSLYISRFASLLEFGPETHRVANDAIRLVARMNRDW---------------------------------MQIGRRPAGICGACLLIAARMNNFRRSVREVVHV 256
BLAST of FC881921 vs. ExPASy Swiss-Prot
Match: TF3B_HUMAN (Transcription factor IIIB 90 kDa subunit OS=Homo sapiens GN=BRF1 PE=1 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 5.125e-19 Identity = 60/180 (33.33%), Postives = 91/180 (50.56%), Query Frame = 3 Query: 189 KIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITV*YCLPIFYFDLVWALGLIGDLKS*NMYDIDLQTGRKPTGLCGAALYISALTHGLKFSKSD---IVKIC 716 K+AV+R+ T+GR+ V A+CLYL CR + P +L+D S+ L +NVY LG +L L + L I + +DP +++ +F L G N +V TA +L MKRDW + TGR+P+GLCGAAL ++A H + + + +VK+C Sbjct: 115 KMAVSRHLTRGRKMAHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLARELCINAPA-----IDPCLYIPRFAHLLEFGEKNHEVSMTALRLLQRMKRDW---------------------------------MHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVKVC 256
BLAST of FC881921 vs. ExPASy Swiss-Prot
Match: TF3B_MOUSE (Transcription factor IIIB 90 kDa subunit OS=Mus musculus GN=Brf1 PE=1 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 1.142e-18 Identity = 59/180 (32.78%), Postives = 91/180 (50.56%), Query Frame = 3 Query: 189 KIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITV*YCLPIFYFDLVWALGLIGDLKS*NMYDIDLQTGRKPTGLCGAALYISALTHGLKFSKSD---IVKIC 716 K+AV+++ T+GR+ V A+CLYL CR + P +L+D S+ L +NVY LG +L L + L I + +DP +++ +F L G N +V TA +L MKRDW + TGR+P+GLCGAAL ++A H + + + +VK+C Sbjct: 115 KMAVSKHLTRGRKMAHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLARELCINAPA-----IDPCLYIPRFAHLLEFGEKNHEVSMTALRLLQRMKRDW---------------------------------MHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVKVC 256
BLAST of FC881921 vs. ExPASy Swiss-Prot
Match: TF3B_KLULA (Transcription factor IIIB 70 kDa subunit OS=Kluyveromyces lactis GN=TDS4 PE=3 SV=2) HSP 1 Score: 92.0485 bits (227), Expect = 3.322e-18 Identity = 57/176 (32.39%), Postives = 92/176 (52.27%), Query Frame = 3 Query: 189 KIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK-KVCDTARDILASMKRDWITV*YCLPIFYFDLVWALGLIGDLKS*NMYDIDLQTGRKPTGLCGAALYISALTHGLKFSKSDIVKI 713 ++A++ NF +GR+++ V A+CLY+ACR++ +LIDFS+ L ++VY +GA +L+L + L I L DPS+F+ F ++L G K KV A + +M RDW MY+ GR+P G+ GA L ++ + L+ + S+IV I Sbjct: 120 RLALSNNFVQGRKSQNVIAACLYIACRKERTHHMLIDFSSRLQVSVYSIGATFLKLAKKLQIVK----LPLADPSLFIQHFAEKLELGDKKIKVIRDAVKLAQTMSRDW----------------------------MYE-----GRRPAGIAGACLLLACRMNNLRRTHSEIVAI 258
BLAST of FC881921 vs. ExPASy Swiss-Prot
Match: TF3B_YEAST (Transcription factor IIIB 70 kDa subunit OS=Saccharomyces cerevisiae GN=TDS4 PE=1 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 1.649e-17 Identity = 54/176 (30.68%), Postives = 92/176 (52.27%), Query Frame = 3 Query: 189 KIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITV*YCLPIFYFDLVWALGLIGDLKS*NMYDIDLQTGRKPTGLCGAALYISALTHGLKFSKSDIVKI 713 K+A+A NF +GRR++ V ASCLY+ACR++ +LIDFS+ L ++VY +GA +L++ + L+I + L DPS+F+ F ++L L KV A + M +DW M++ GR+P G+ GA + ++ + L+ + ++IV + Sbjct: 109 KLALANNFVQGRRSQNVIASCLYVACRKEKTHHMLIDFSSRLQVSVYSIGATFLKMVKKLHITE----LPLADPSLFIQHFAEKLDLADKKIKVVKDAVKLAQRMSKDW----------------------------MFE-----GRRPAGIAGACILLACRMNNLRRTHTEIVAV 247
BLAST of FC881921 vs. ExPASy Swiss-Prot
Match: TF3B_CANAL (Transcription factor IIIB 70 kDa subunit OS=Candida albicans GN=TDS4 PE=3 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 5.303e-16 Identity = 53/176 (30.11%), Postives = 85/176 (48.30%), Query Frame = 3 Query: 189 KIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITV*YCLPIFYFDLVWALGLIGDLKS*NMYDIDLQTGRKPTGLCGAALYISALTHGLKFSKSDIVKI 713 ++A+ NF +GRR+ V A+CLY+ACR++ +LIDFS+ L I+VY LGA +L++ + L+I L DPS+F+ F ++L KV A + M DWI GR+P G+ GA + ++A + + S ++IV + Sbjct: 117 RLALTLNFVQGRRSNNVLATCLYVACRKERTHHMLIDFSSRLQISVYSLGATFLKMVKALHITS----LPLADPSLFIQHFVEKLDFKDKATKVAKDAVKLAHRMAADWI---------------------------------HEGRRPAGIAGACVLLAARMNNFRRSHAEIVAV 255 The following BLAST results are available for this feature:
BLAST of FC881921 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 6
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC881921 ID=FC881921; Name=FC881921; organism=Citrus clementina; type=EST; length=721bpback to top |