FC881921

Overview
NameFC881921
Unique NameFC881921
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length721
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC881921 vs. ExPASy Swiss-Prot
Match: TF3B_SCHPO (Transcription factor IIIB 60 kDa subunit OS=Schizosaccharomyces pombe GN=brf1 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.924e-19
Identity = 58/175 (33.14%), Postives = 89/175 (50.86%), Query Frame = 3
Query:  192 IAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITV*YCLPIFYFDLVWALGLIGDLKS*NMYDIDLQTGRKPTGLCGAALYISALTHGLKFSKSDIVKI 713
            +A+  NF KGRR++ V ASCLY+ CR      +LIDFS+ L INV++LG+ +L+LC+VL        L  +DPS+++ +F   L  G    +V + A  ++A M RDW                                 +Q GR+P G+CGA L I+A  +  + S  ++V +
Sbjct:  120 LAINNNFIKGRRSQYVVASCLYIVCRISKTSHMLIDFSDILQINVFKLGSTFLKLCRVL-----RPNLPLLDPSLYISRFASLLEFGPETHRVANDAIRLVARMNRDW---------------------------------MQIGRRPAGICGACLLIAARMNNFRRSVREVVHV 256          
BLAST of FC881921 vs. ExPASy Swiss-Prot
Match: TF3B_HUMAN (Transcription factor IIIB 90 kDa subunit OS=Homo sapiens GN=BRF1 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.125e-19
Identity = 60/180 (33.33%), Postives = 91/180 (50.56%), Query Frame = 3
Query:  189 KIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITV*YCLPIFYFDLVWALGLIGDLKS*NMYDIDLQTGRKPTGLCGAALYISALTHGLKFSKSD---IVKIC 716
            K+AV+R+ T+GR+   V A+CLYL CR +  P +L+D S+ L +NVY LG  +L L + L I   +     +DP +++ +F   L  G  N +V  TA  +L  MKRDW                                 + TGR+P+GLCGAAL ++A  H  + +  +   +VK+C
Sbjct:  115 KMAVSRHLTRGRKMAHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLARELCINAPA-----IDPCLYIPRFAHLLEFGEKNHEVSMTALRLLQRMKRDW---------------------------------MHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVKVC 256          
BLAST of FC881921 vs. ExPASy Swiss-Prot
Match: TF3B_MOUSE (Transcription factor IIIB 90 kDa subunit OS=Mus musculus GN=Brf1 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.142e-18
Identity = 59/180 (32.78%), Postives = 91/180 (50.56%), Query Frame = 3
Query:  189 KIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITV*YCLPIFYFDLVWALGLIGDLKS*NMYDIDLQTGRKPTGLCGAALYISALTHGLKFSKSD---IVKIC 716
            K+AV+++ T+GR+   V A+CLYL CR +  P +L+D S+ L +NVY LG  +L L + L I   +     +DP +++ +F   L  G  N +V  TA  +L  MKRDW                                 + TGR+P+GLCGAAL ++A  H  + +  +   +VK+C
Sbjct:  115 KMAVSKHLTRGRKMAHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLARELCINAPA-----IDPCLYIPRFAHLLEFGEKNHEVSMTALRLLQRMKRDW---------------------------------MHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVKVC 256          
BLAST of FC881921 vs. ExPASy Swiss-Prot
Match: TF3B_KLULA (Transcription factor IIIB 70 kDa subunit OS=Kluyveromyces lactis GN=TDS4 PE=3 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 3.322e-18
Identity = 57/176 (32.39%), Postives = 92/176 (52.27%), Query Frame = 3
Query:  189 KIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK-KVCDTARDILASMKRDWITV*YCLPIFYFDLVWALGLIGDLKS*NMYDIDLQTGRKPTGLCGAALYISALTHGLKFSKSDIVKI 713
            ++A++ NF +GR+++ V A+CLY+ACR++    +LIDFS+ L ++VY +GA +L+L + L I      L   DPS+F+  F ++L  G  K KV   A  +  +M RDW                            MY+     GR+P G+ GA L ++   + L+ + S+IV I
Sbjct:  120 RLALSNNFVQGRKSQNVIAACLYIACRKERTHHMLIDFSSRLQVSVYSIGATFLKLAKKLQIVK----LPLADPSLFIQHFAEKLELGDKKIKVIRDAVKLAQTMSRDW----------------------------MYE-----GRRPAGIAGACLLLACRMNNLRRTHSEIVAI 258          
BLAST of FC881921 vs. ExPASy Swiss-Prot
Match: TF3B_YEAST (Transcription factor IIIB 70 kDa subunit OS=Saccharomyces cerevisiae GN=TDS4 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.649e-17
Identity = 54/176 (30.68%), Postives = 92/176 (52.27%), Query Frame = 3
Query:  189 KIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITV*YCLPIFYFDLVWALGLIGDLKS*NMYDIDLQTGRKPTGLCGAALYISALTHGLKFSKSDIVKI 713
            K+A+A NF +GRR++ V ASCLY+ACR++    +LIDFS+ L ++VY +GA +L++ + L+I +    L   DPS+F+  F ++L L     KV   A  +   M +DW                            M++     GR+P G+ GA + ++   + L+ + ++IV +
Sbjct:  109 KLALANNFVQGRRSQNVIASCLYVACRKEKTHHMLIDFSSRLQVSVYSIGATFLKMVKKLHITE----LPLADPSLFIQHFAEKLDLADKKIKVVKDAVKLAQRMSKDW----------------------------MFE-----GRRPAGIAGACILLACRMNNLRRTHTEIVAV 247          
BLAST of FC881921 vs. ExPASy Swiss-Prot
Match: TF3B_CANAL (Transcription factor IIIB 70 kDa subunit OS=Candida albicans GN=TDS4 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.303e-16
Identity = 53/176 (30.11%), Postives = 85/176 (48.30%), Query Frame = 3
Query:  189 KIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITV*YCLPIFYFDLVWALGLIGDLKS*NMYDIDLQTGRKPTGLCGAALYISALTHGLKFSKSDIVKI 713
            ++A+  NF +GRR+  V A+CLY+ACR++    +LIDFS+ L I+VY LGA +L++ + L+I      L   DPS+F+  F ++L       KV   A  +   M  DWI                                   GR+P G+ GA + ++A  +  + S ++IV +
Sbjct:  117 RLALTLNFVQGRRSNNVLATCLYVACRKERTHHMLIDFSSRLQISVYSLGATFLKMVKALHITS----LPLADPSLFIQHFVEKLDFKDKATKVAKDAVKLAHRMAADWI---------------------------------HEGRRPAGIAGACVLLAARMNNFRRSHAEIVAV 255          
The following BLAST results are available for this feature:
BLAST of FC881921 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
TF3B_SCHPO3.924e-1933.14Transcription factor IIIB 60 kDa subunit OS=Schizo... [more]
TF3B_HUMAN5.125e-1933.33Transcription factor IIIB 90 kDa subunit OS=Homo s... [more]
TF3B_MOUSE1.142e-1832.78Transcription factor IIIB 90 kDa subunit OS=Mus mu... [more]
TF3B_KLULA3.322e-1832.39Transcription factor IIIB 70 kDa subunit OS=Kluyve... [more]
TF3B_YEAST1.649e-1730.68Transcription factor IIIB 70 kDa subunit OS=Saccha... [more]
TF3B_CANAL5.303e-1630.11Transcription factor IIIB 70 kDa subunit OS=Candid... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA93AD04RM1 IVIA1 Citrus clementina cDNA clone IC0AAA93AD04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC881921 ID=FC881921; Name=FC881921; organism=Citrus clementina; type=EST; length=721bp
ATTTCTTTTGATATTGCAGCTTTTGATGATATGAGACAAATGAAGAATGC
TTTAAATATTGGTGAAAGTGATGAGATTGTTCACGTAGCTAAACGCTTTT
ATGGAGTATGTTTCGCTGCTGCTAATAACATTGTTATTAGTAGTGCATCT
TTTAAATCAATTTCACTAATTTTTTAATCTGACTCTTGAAGATTGCTGTT
GCTCGCAATTTTACTAAGGGGCGCAGAACAGAGCAAGTACAGGCTTCTTG
TCTTTACCTTGCTTGCCGGCAAAAGAGCAAGCCATTTCTTCTTATTGATT
TTTCAAATTACTTGAATATAAATGTTTACGAGCTCGGTGCTGTATATTTG
CAGCTTTGCCAAGTGCTATACATTGCAGATGAATCCAATGTACTAAAACA
AGTTGATCCTTCGATCTTTTTGCATAAATTTACAGACCGTTTATTACCAG
GTGGGAATAAAAAGGTTTGCGATACTGCTCGAGACATTCTAGCTAGCATG
AAACGGGATTGGATAACGGTTTAATACTGCCTTCCCATATTTTACTTTGA
TTTAGTTTGGGCACTAGGCTTAATTGGTGATCTTAAAAGTTGAAATATGT
ATGACATTGATTTACAGACAGGGAGAAAGCCTACTGGACTATGTGGTGCT
GCACTGTACATATCTGCACTGACCCATGGTCTCAAGTTTTCCAAGTCCGA
CATTGTCAAGATTTGTGCATA
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