FC885354

Overview
NameFC885354
Unique NameFC885354
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length919
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC885354 vs. ExPASy Swiss-Prot
Match: ATP4_IPOBA (ATP synthase subunit delta', mitochondrial OS=Ipomoea batatas PE=1 SV=1)

HSP 1 Score: 287.73 bits (735), Expect = 6.158e-77
Identity = 140/176 (79.55%), Postives = 160/176 (90.91%), Query Frame = 1
Query:  124 VPAAPAVDSTFVESWKKVNPNMEPPKTPSVYMTPRPQTPTSIPSKLTVNFVLPYASELSAKEVDMVIVLASTGQMGVLPGHVPTIAELKPGVLSVHDGNDTKKYFVSSGFAFIHANSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEAQIGVDVHSALNSALTG 651
            +PA  A DSTFVE+WKK+ PN++PPKTPS YM PRP TP+SIPSKLTVNFVLPY+SEL+ KEVDMVI+ A+TGQMGVLPGHV TIAELKPGV+SVH+GND  KYFVS GFAFIHANS ADIIAVEAVP+D+ID +LVQKGLAEF QKL++A+TD+EKAEAQIGVDVHSALN+ALTG
Sbjct:   25 LPAETAADSTFVEAWKKLIPNVDPPKTPSAYMAPRPATPSSIPSKLTVNFVLPYSSELAGKEVDMVIIPATTGQMGVLPGHVATIAELKPGVMSVHEGNDVSKYFVSGGFAFIHANSFADIIAVEAVPLDRIDANLVQKGLAEFTQKLNTASTDVEKAEAQIGVDVHSALNAALTG 200          
BLAST of FC885354 vs. ExPASy Swiss-Prot
Match: ATP4_ARATH (ATP synthase subunit delta', mitochondrial OS=Arabidopsis thaliana GN=At5g47030 PE=1 SV=1)

HSP 1 Score: 287.73 bits (735), Expect = 6.158e-77
Identity = 138/170 (81.18%), Postives = 158/170 (92.94%), Query Frame = 1
Query:  142 VDSTFVESWKKVNPNMEPPKTPSVYMTPRPQTPTSIPSKLTVNFVLPYASELSAKEVDMVIVLASTGQMGVLPGHVPTIAELKPGVLSVHDGNDTKKYFVSSGFAFIHANSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEAQIGVDVHSALNSALTG 651
            +DSTFVE+WKKV PNM+PP+TPS +M PRP TP+SIP+KLTVNFVLPY SEL+ KEVDMVI+ ASTGQMGVLPGHVPTIAELKPG++SVH+G D KKYF+SSGFAF+HANSVADIIAVEAVP+D IDPS VQKGLAEF QKL+SATTDLEKAEAQIGV+VHSA+N+AL+G
Sbjct:   34 LDSTFVEAWKKVAPNMDPPQTPSAFMKPRPSTPSSIPTKLTVNFVLPYTSELTGKEVDMVIIPASTGQMGVLPGHVPTIAELKPGIMSVHEGTDVKKYFLSSGFAFLHANSVADIIAVEAVPLDHIDPSQVQKGLAEFQQKLASATTDLEKAEAQIGVEVHSAINAALSG 203          
BLAST of FC885354 vs. ExPASy Swiss-Prot
Match: ATP4_PEA (ATP synthase subunit delta', mitochondrial OS=Pisum sativum PE=3 SV=1)

HSP 1 Score: 262.692 bits (670), Expect = 2.121e-69
Identity = 128/174 (73.56%), Postives = 153/174 (87.93%), Query Frame = 1
Query:  130 AAPAVDSTFVESWKKVNPNMEPPKTPSVYMTPRPQTPTSIPSKLTVNFVLPYASELSAKEVDMVIVLASTGQMGVLPGHVPTIAELKPGVLSVHDGNDTKKYFVSSGFAFIHANSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEAQIGVDVHSALNSALTG 651
            A PA +S+FVE+W+KV+PN++PPKTP  ++  RP  P++IP+KLTVNFVLPY+S+L+AKEVD VI+ A+TG+MGVLPGHV TIAELKPGVL+V +G DT KYFVSSGF FIHANSVADIIAVEAVP++Q+D  LVQKGL EF QKL+SATTDLEK EAQIG+DV SALNSALTG
Sbjct:   24 ATPATNSSFVEAWRKVSPNIDPPKTPLEFLKTRPPVPSTIPTKLTVNFVLPYSSQLAAKEVDSVIIPATTGEMGVLPGHVATIAELKPGVLTVQEGTDTTKYFVSSGFRFIHANSVADIIAVEAVPVNQLDRDLVQKGLQEFTQKLNSATTDLEKREAQIGIDVDSALNSALTG 197          
BLAST of FC885354 vs. ExPASy Swiss-Prot
Match: ATPD_AGABI (ATP synthase subunit delta, mitochondrial OS=Agaricus bisporus GN=atpD PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 2.013e-19
Identity = 49/133 (36.84%), Postives = 81/133 (60.90%), Query Frame = 1
Query:  247 IPSKLTVNFVLPYASELSAKEVDMVIVLASTGQMGVLPGHVPTIAELKPGVLSVHDGNDTKKYFVSSGFAFIHANSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEAQIGVDVHSALNSAL 645
            I  KL ++  LP+ +  S+++V  V + A +G MG+L  HVP+I  L+PGV+ V + + ++K+FVS GFA +H N+   I  VEA P++      ++  L E N+  + + ++ +K EAQI  +V+ AL  AL
Sbjct:   28 ISDKLKLSLALPHKAIFSSQDVVQVNIPAESGDMGILSSHVPSIEPLRPGVVEVVEDSGSQKWFVSGGFATVHPNNRLTINVVEAAPLEDFSIEAIRANLQEANKVAAGSGSEADKMEAQIEAEVYEALQHAL 160          
BLAST of FC885354 vs. ExPASy Swiss-Prot
Match: ATPD_KLULA (ATP synthase subunit delta, mitochondrial OS=Kluyveromyces lactis GN=ATP16 PE=3 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 3.434e-19
Identity = 53/129 (41.09%), Postives = 80/129 (62.02%), Query Frame = 1
Query:  259 LTVNFVLPYASELSAKEVDMVIVLASTGQMGVLPGHVPTIAELKPGVLSVHDGNDTKKYFVSSGFAFIHANSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEAQIGVDVHSALNSAL 645
            L + F LP+ +  S   V  V + A +GQ+G+L  HVPT+ +L PGV+ V +G+ +KK+FVS GFA +  +S   I +VEA P++   P  V+  LAE  + +SSA  ++  AEA I ++V  AL +AL
Sbjct:   31 LKLQFALPHQTLFSGTPVTQVNLPAKSGQIGILANHVPTVEQLVPGVVEVLEGSSSKKFFVSGGFATVQPDSTLAITSVEAFPLESFSPENVRSLLAEAQKNVSSA-DEVAAAEAAIQLEVLEALQAAL 158          
BLAST of FC885354 vs. ExPASy Swiss-Prot
Match: ATPD_DICDI (ATP synthase subunit delta, mitochondrial OS=Dictyostelium discoideum GN=atp5D PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 9.992e-19
Identity = 48/126 (38.10%), Postives = 76/126 (60.32%), Query Frame = 1
Query:  259 LTVNFVLPYASELSAKEVDMVIVLASTGQMGVLPGHVPTIAELKPGVLSV-HDGNDTKKYFVSSGFAFIHANSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEAQIGVDVHSAL 633
            LT + + P+ +    K+  +V +  + G  GV   HVP IAELKPGV+ + H+  D +K+F+S GFAF++ ++   I  +EAVPIDQ+D   V+ GLA + Q  + A  +  KA A IG++ +  +
Sbjct:   37 LTFSLLSPHQTIYKDKKAQLVTLPGAKGIFGVAKNHVPRIAELKPGVIQINHENGDLEKFFISGGFAFVNPDASCYINTIEAVPIDQLDAEEVKNGLARYTQLYNDAQEENAKAVALIGLETYQQM 162          
BLAST of FC885354 vs. ExPASy Swiss-Prot
Match: ATPD_ASHGO (ATP synthase subunit delta, mitochondrial OS=Ashbya gossypii GN=ATP16 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.797e-18
Identity = 52/129 (40.31%), Postives = 76/129 (58.91%), Query Frame = 1
Query:  259 LTVNFVLPYASELSAKEVDMVIVLASTGQMGVLPGHVPTIAELKPGVLSVHDGNDTKKYFVSSGFAFIHANSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEAQIGVDVHSALNSAL 645
            L +NF LP+ +  +   V  V +   TGQ+G+L  HVP + +L PGV+ V +G+++KK+FVS GFA +  +S   I +VEA P+D      V+  LAE  QK + A      AEA I ++V  AL +AL
Sbjct:   30 LKLNFALPHETLFAGTAVKQVNLPVKTGQIGILANHVPIVEQLVPGVVEVLEGSESKKFFVSGGFATVQPDSTLSITSVEAFPLDSFSAENVRALLAE-AQKNAGAADSRVAAEASIQIEVLEALQAAL 157          
BLAST of FC885354 vs. ExPASy Swiss-Prot
Match: ATPD_YEAST (ATP synthase subunit delta, mitochondrial OS=Saccharomyces cerevisiae GN=ATP16 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 6.477e-18
Identity = 51/131 (38.93%), Postives = 79/131 (60.31%), Query Frame = 1
Query:  253 SKLTVNFVLPYASELSAKEVDMVIVLASTGQMGVLPGHVPTIAELKPGVLSVHDGNDTKKYFVSSGFAFIHANSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEAQIGVDVHSALNSAL 645
            S L + F LP+ +  S  EV  V + A +G++GVL  HVPT+ +L PGV+ V +G+++KK+F+S GFA +  +S   + A+EA P++      ++  LAE  + +SS+    E AEA I V+V   L S L
Sbjct:   30 SGLKLQFALPHETLYSGSEVTQVNLPAKSGRIGVLANHVPTVEQLLPGVVEVMEGSNSKKFFISGGFATVQPDSQLCVTAIEAFPLESFSQENIKNLLAEAKKNVSSSDA-REAAEAAIQVEVLENLQSVL 159          
BLAST of FC885354 vs. ExPASy Swiss-Prot
Match: ATPD_BOVIN (ATP synthase subunit delta, mitochondrial OS=Bos taurus GN=ATP5D PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 2.083e-16
Identity = 48/139 (34.53%), Postives = 75/139 (53.96%), Query Frame = 1
Query:  232 QTPTSIPSKLTVNFVLPYASELSAKEVDMVIVLASTGQMGVLPGHVPTIAELKPGVLSVH-DGNDTKKYFVSSGFAFIHANSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEAQIGVDVHSALNSAL 645
            Q P + P +++  F  P     ++  V  V V   TG  G+L  HVPT+  L+PG++ VH +   T KYFVSSG   ++A+S   ++A EAV +D +D    +  L +   +L  A  +  +AE QI ++ + AL  AL
Sbjct:   29 QAPAAGPGQMSFTFASPTQVFFNSANVRQVDVPTQTGAFGILAAHVPTLQVLRPGLVVVHAEDGTTSKYFVSSGSVTVNADSSVQLLAEEAVTLDMLDLGAAKANLEKAQSELLGAADEATRAEIQIRIEANEALVKAL 167          
BLAST of FC885354 vs. ExPASy Swiss-Prot
Match: ATPD_MOUSE (ATP synthase subunit delta, mitochondrial OS=Mus musculus GN=Atp5d PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.554e-16
Identity = 48/137 (35.04%), Postives = 74/137 (54.01%), Query Frame = 1
Query:  238 PTSIPSKLTVNFVLPYASELSAKEVDMVIVLASTGQMGVLPGHVPTIAELKPGVLSVH-DGNDTKKYFVSSGFAFIHANSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEAQIGVDVHSALNSAL 645
            P + P +++  F  P      +  V  V V   TG  G+L  HVPT+  L+PG++ VH +   T KYFVSSG   ++A+S   ++A EAV +D +D    +  L +   +LS A  +  +AE QI ++ + AL  AL
Sbjct:   31 PAAGPGQMSFTFASPTQVFFDSANVKQVDVPTLTGAFGILASHVPTLQVLRPGLVVVHTEDGTTTKYFVSSGSVTVNADSSVQLLAEEAVTLDMLDLGAARANLEKAQSELSGAADEAARAEIQIRIEANEALVKAL 167          
The following BLAST results are available for this feature:
BLAST of FC885354 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
ATP4_IPOBA6.158e-7779.55ATP synthase subunit delta', mitochondrial OS=Ipom... [more]
ATP4_ARATH6.158e-7781.18ATP synthase subunit delta', mitochondrial OS=Arab... [more]
ATP4_PEA2.121e-6973.56ATP synthase subunit delta', mitochondrial OS=Pisu... [more]
ATPD_AGABI2.013e-1936.84ATP synthase subunit delta, mitochondrial OS=Agari... [more]
ATPD_KLULA3.434e-1941.09ATP synthase subunit delta, mitochondrial OS=Kluyv... [more]
ATPD_DICDI9.992e-1938.10ATP synthase subunit delta, mitochondrial OS=Dicty... [more]
ATPD_ASHGO3.797e-1840.31ATP synthase subunit delta, mitochondrial OS=Ashby... [more]
ATPD_YEAST6.477e-1838.93ATP synthase subunit delta, mitochondrial OS=Sacch... [more]
ATPD_BOVIN2.083e-1634.53ATP synthase subunit delta, mitochondrial OS=Bos t... [more]
ATPD_MOUSE3.554e-1635.04ATP synthase subunit delta, mitochondrial OS=Mus m... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA75AF02RM1 IVIA1 Citrus clementina cDNA clone IC0AAA75AF02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC885354 ID=FC885354; Name=FC885354; organism=Citrus clementina; type=EST; length=919bp
CGAAAGGCAAAACCAAACACTCCCAAAAGCTAATCAACGCTCTCGCCGAA
AATGTTCCGGCAAGCTTCACGCCTCTTGGCCCGAGCCAGCGCGGTGACAA
GGTCTCGCGCCTTCTCATCGCAGGTCCCAGCCGCGCCCGCCGTTGATTCG
ACTTTCGTTGAGTCATGGAAGAAAGTGAATCCAAACATGGAGCCGCCAAA
GACTCCATCGGTTTACATGACCCCTCGCCCACAAACCCCCACTTCAATCC
CCTCCAAGCTCACCGTCAACTTCGTCCTTCCCTACGCCTCTGAGCTCTCC
GCTAAGGAGGTCGATATGGTTATAGTTCTAGCATCAACTGGGCAAATGGG
TGTTCTGCCTGGACATGTACCTACAATTGCAGAACTAAAGCCTGGAGTCT
TATCGGTTCATGATGGGAATGATACCAAGAAATACTTTGTTAGCAGTGGG
TTTGCATTTATCCATGCAAACTCTGTTGCTGACATAATTGCTGTTGAGGC
TGTGCCAATCGACCAAATTGACCCCAGCTTGGTCCAGAAGGGCCTTGCAG
AGTTCAACCAGAAGCTCAGTTCAGCTACAACTGACCTGGAGAAAGCTGAA
GCTCAGATAGGTGTTGATGTTCACAGTGCACTCAACTCTGCTCTCACAGG
CTAATTTTCTCCTACCTCCAAATTTTTCTCATTTTGCTTCCTATTTTTGA
GTTTCATTGTGGTTTTCCATCCTCCATGTAATCAGCAAGTCACTAAGATT
TGTCAAACATAATTTTACTGTTTTTCTCAGAGGCTTAAAATAAATTATGA
GAACAAGGATCCCAATCTTGCTATTTTCTTAGAAATTGTTTGATGGTGGA
GATTTGCTCATTTATTCTTTGGAGCAGCTGGAATAAGTTGTCGATATTTG
ATATAAATTTTTCTTTTTC
back to top