FC888367

Overview
NameFC888367
Unique NameFC888367
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length920
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC888367 vs. ExPASy Swiss-Prot
Match: U308_ARATH (UPF0308 protein At2g37240, chloroplastic OS=Arabidopsis thaliana GN=At2g37240 PE=2 SV=2)

HSP 1 Score: 317.005 bits (811), Expect = 9.478e-86
Identity = 150/182 (82.42%), Postives = 165/182 (90.66%), Query Frame = 3
Query:  213 TKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGEVYADPNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGIIVAGPGKSNISYIHRDKEAGDDPDIQDILKACCS 758
            T + LDTVKV D+ GN IPISDLWKDRKAVVAFARHFGCVLCRKRA YLA KKDVMDASGVALVLIGPGS++QA TF EQTKFKGEVYADPNH+SYEAL FVSGV VTFTPKA +KI++SYMEGYRQDWKLSF +DTV RGGWQQGGI+VAGPGK NISYI +DKEAGDDP +++ILKACC+
Sbjct:   67 TADSLDTVKVLDLRGNEIPISDLWKDRKAVVAFARHFGCVLCRKRAAYLAEKKDVMDASGVALVLIGPGSIDQANTFVEQTKFKGEVYADPNHASYEALEFVSGVSVTFTPKAAMKILESYMEGYRQDWKLSFMKDTVERGGWQQGGILVAGPGKDNISYIRKDKEAGDDPPVEEILKACCA 248          
BLAST of FC888367 vs. ExPASy Swiss-Prot
Match: CI021_HUMAN (UPF0308 protein C9orf21 OS=Homo sapiens GN=C9orf21 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.917e-16
Identity = 53/177 (29.94%), Postives = 86/177 (48.59%), Query Frame = 3
Query:  240 VYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLA-AKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGEVYADPNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQD-WK------LSFERDTVSRGGWQQGGIIVAGPGKSNISYIHRDKEAGDDPDIQDILK 746
            V D  G  +P   L+++R+AVV F RHF C +C++  + LA   +  +  + V L++IG  S      F + T +  E+Y DP    Y+ L    G  +  + ++   I  + + G  Q  W+        F+ D       QQGG ++ GPG +NI +IHRD+   D   I  +L+
Sbjct:   39 VLDARGQRVPFGALFRERRAVVVFVRHFLCYICKEYVEDLAKIPRSFLQEANVTLIVIGQSSYHHIEPFCKLTGYSHEIYVDPEREIYKRLGMKRGEEIASSGQSP-HIKSNLLSGSLQSLWRAVTGPLFDFQGDPA-----QQGGTLILGPG-NNIHFIHRDRNRLDHKPINSVLQ 208          
BLAST of FC888367 vs. ExPASy Swiss-Prot
Match: CI021_MOUSE (UPF0308 protein C9orf21 homolog OS=Mus musculus PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.764e-15
Identity = 53/177 (29.94%), Postives = 88/177 (49.72%), Query Frame = 3
Query:  240 VYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLA-AKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGEVYADPNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQD-WK------LSFERDTVSRGGWQQGGIIVAGPGKSNISYIHRDKEAGDDPDIQDILK 746
            V D +G  +    L+++R+AVV F RHF C +C++  + LA   K V+  + V L++IG  S      F + T +  E+Y DP    Y+ L    G  ++ + ++   I  + + G  Q  W+        F+ D       QQGG ++ GPG +NI ++HRD+   D   I  +L+
Sbjct:   39 VLDASGRRVTFGALFRERRAVVVFVRHFLCYVCKEYVEDLAKIPKSVLREADVTLIVIGQSSYHHIEPFCKLTGYSHEIYVDPEREIYKRLGMKRGEEISSSGQSP-HIKSNLLSGSLQSLWRAVTGPLFDFQGDPA-----QQGGTLILGPG-NNIHFVHRDRNRLDHKPINSVLQ 208          
BLAST of FC888367 vs. ExPASy Swiss-Prot
Match: CI021_BOVIN (UPF0308 protein C9orf21 homolog OS=Bos taurus PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 8.753e-15
Identity = 49/176 (27.84%), Postives = 82/176 (46.59%), Query Frame = 3
Query:  240 VYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLA-AKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGEVYADPNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWK------LSFERDTVSRGGWQQGGIIVAGPGKSNISYIHRDKEAGDDPDIQDILK 746
            V D +G  +   +L+++R+A+V F RHF C +C++  + LA   K  +  + V L++IG  S      F + T +  E+Y DP    Y+ L    G  +  + ++            R  W+        F+ D       QQGG ++ GPG +NI +IH D+   D   I  +L+
Sbjct:   41 VLDASGRPVLFGELFRERRAIVVFVRHFLCYICKEYVEDLAKIPKSFLQEANVTLIVIGQSSYHHIEPFCKLTGYSHEIYVDPEREIYKRLGMKRGEEIASSGQSPHVKSNILSGSIRSLWRAVTGPLFDFQGDPA-----QQGGTLILGPG-NNIHFIHHDRNRLDHKPINSVLQ 210          
BLAST of FC888367 vs. ExPASy Swiss-Prot
Match: CA093_DANRE (Uncharacterized protein C1orf93 homolog OS=Danio rerio GN=zgc:85644 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 4.066e-12
Identity = 46/166 (27.71%), Postives = 78/166 (46.99%), Query Frame = 3
Query:  255 GNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGEVYADPNHSSYEALSFVSGVLVTFTPKA-GLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGIIVAGPGKSNISYIHRDKEAGDDPDIQDILKA 749
            G  + I  LW+++  V+ F R FGC +CR  A  ++  +  + A G+ALV IGP      + F +   FKG++Y D     Y+ L F     +   P A G K+ +   +   +  + +F  D +     Q GG+++   G   +      K   D+P +++I KA
Sbjct:   20 GEMVEIGSLWREQAVVLFFLRRFGCQVCRWMAAEVSKLEKDLKAHGIALVGIGPEET-GVKEFKDGGFFKGDIYIDEMKQCYKDLGFKRYNAINVVPAAMGKKVREIASKASAEGIQGNFSGDLL-----QSGGMLIVAKGGEKVLLHFIQKSPADNPPLEEITKA 179          
BLAST of FC888367 vs. ExPASy Swiss-Prot
Match: CA093_BOVIN (Uncharacterized protein C1orf93 homolog OS=Bos taurus PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.668e-11
Identity = 49/167 (29.34%), Postives = 80/167 (47.90%), Query Frame = 3
Query:  249 VNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGEVYADPNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGIIVAGPGKSNISYIHRDKEAGDDPDIQDILKA 749
            V G A+ + +LW+++  VVA  R FGC++CR  A  L+  K ++D  GV LV +GP ++   + F +   F GE+Y D +   Y+ L F     ++  P A  K ++          K    +  +S    Q GG++V   G   +      K  GD   ++ IL+A
Sbjct:   18 VTGEAVELRNLWQEQACVVAGLRRFGCMVCRWIARDLSNLKGLLDQHGVRLVGVGPEAL-GLQEFLDGGYFAGELYLDESKQFYKELGFKRYNSLSILPAALGKPVRE----VAAKAKAVGIQGNLSGDLLQSGGLLVVAKGGDKVLLHFVQKSPGDYAPLESILQA 179          
The following BLAST results are available for this feature:
BLAST of FC888367 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
U308_ARATH9.478e-8682.42UPF0308 protein At2g37240, chloroplastic OS=Arabid... [more]
CI021_HUMAN7.917e-1629.94UPF0308 protein C9orf21 OS=Homo sapiens GN=C9orf21... [more]
CI021_MOUSE1.764e-1529.94UPF0308 protein C9orf21 homolog OS=Mus musculus PE... [more]
CI021_BOVIN8.753e-1527.84UPF0308 protein C9orf21 homolog OS=Bos taurus PE=2... [more]
CA093_DANRE4.066e-1227.71Uncharacterized protein C1orf93 homolog OS=Danio r... [more]
CA093_BOVIN7.668e-1129.34Uncharacterized protein C1orf93 homolog OS=Bos tau... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA43AD04RM1 IVIA1 Citrus clementina cDNA clone IC0AAA43AD04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC888367 ID=FC888367; Name=FC888367; organism=Citrus clementina; type=EST; length=920bp
CCATGTCGACCTCTCTCTCAACAGCCATCTCCCCTAACACTACTGTTTGA
TTCAACAGACTCACTAATCCCGCCCCGACACGTATGCTCCCCAACCAATC
ACCACTCTGGCGACCACGTCACTGGAATAAAACATTAAAACTCTCGCCGC
GGCGGCCAAGCCACGTCATCGCCTCCGCAGTCTCTGAGTCTCCTCCTTCT
GTGAGCGAAGATACTAAAAATTTACTAGACACAGTGAAAGTGTACGATGT
AAACGGAAACGCAATTCCAATTTCCGATTTGTGGAAAGACCGAAAAGCCG
TCGTCGCATTTGCTCGCCACTTCGGATGTGTGCTTTGCCGCAAGCGAGCT
GATTATCTTGCCGCCAAGAAGGATGTGATGGATGCATCTGGAGTGGCACT
TGTTTTAATTGGACCTGGTAGCGTTGAACAGGCAAGGACTTTCTCTGAGC
AAACAAAATTCAAAGGAGAAGTTTATGCAGATCCTAACCACTCATCTTAT
GAGGCACTAAGCTTTGTTTCGGGGGTCTTAGTCACATTTACTCCCAAAGC
AGGCCTTAAGATAATACAATCCTATATGGAGGGATATCGACAAGACTGGA
AGCTTTCATTTGAAAGGGATACTGTGAGCCGAGGTGGCTGGCAGCAAGGT
GGAATTATAGTTGCAGGTCCCGGTAAAAGTAACATCTCATACATTCACAG
GGATAAAGAAGCTGGGGATGATCCAGATATTCAGGATATACTGAAAGCGT
GTTGCTCATGAAGAATTGGGTGGTCCTTGATCACATTTAGTCGATCATTG
AAAATTACTCTCAGACAATTATCATATGATCTAGTTTTATGGGGCTGCTT
GCTGGCTGTTGAAAAAACTAGCTGTGCCGGTTACATCTAATGGAAGAAAA
ATTCCTAGATTATGGAGATA
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