FC888655

Overview
NameFC888655
Unique NameFC888655
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length786
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig8299 contig Ccv1_Contig8299:78..861. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC888655 vs. ExPASy Swiss-Prot
Match: STLP2_ARATH (SEC12-like protein 2 OS=Arabidopsis thaliana GN=STL2P PE=1 SV=4)

HSP 1 Score: 199.904 bits (507), Expect = 1.316e-50
Identity = 111/240 (46.25%), Postives = 151/240 (62.92%), Query Frame = 2
Query:   50 GVPLYGAGWVPYDQVIRSTHXXXXXXXXXXXXXXXHGSKDEAVADKSDDIRRNYYVVLXXXXXXXNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGP-GRVWDLASSAVATPLAKENDETF 766
            GVP+Y A W+P +  +RS                   S+D+  +  S    R+  +VL        SGI N +L+   D  +NSLS+QP+  L   SDLPYRMA+HP   G+ICAL NSC+LF W+++ + E  + G   SE+V+ +L +VGQQLAL F+ EG++ AAG+E+G LRVFKWPS+  +LNES+AH+SVK L+FS  G+FLVSLG  GP  RVWD+ +SA    L+KE DE F
Sbjct:   18 GVPIYAADWIP-EVDVRSK-----------IIMDPEKSEDDDESSSSSSSSRSC-IVLSGGGGEGRSGISNVILICRVDLNTNSLSEQPLGRLVVGSDLPYRMAVHPREGGLICALPNSCKLFHWEDIMSREDNQAGE--SEEVIKELRDVGQQLALAFNPEGSVLAAGAEDGTLRVFKWPSMNTLLNESQAHSSVKCLTFSESGQFLVSLG--GPVCRVWDVNASAAVASLSKEKDEMF 240          
BLAST of FC888655 vs. ExPASy Swiss-Prot
Match: PHF1_ARATH (SEC12-like protein 1 OS=Arabidopsis thaliana GN=PHF1 PE=2 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 5.391e-20
Identity = 58/188 (30.85%), Postives = 94/188 (50.00%), Query Frame = 2
Query:  212 YVVLXXXXXXXNSGIRNAVLLSHFDF--ASNSLSDQPVAE--LRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDE 760
            +V++        S + +  LL+ F F   + SLS  P+A   L+     P  +++HP GD  +C+  +  C+LFE            G+ I  K L  L+N G Q  + F  +G+  A G  +G LR+ +WP+L +IL+E +AH S++D+ FS D +FL +    G  R+W        + L +  DE
Sbjct:   27 WVLIAKASKRRGSSVSSPALLNIFSFDPITASLSSSPLATHTLKDSDGDPVAVSVHPGGDYFVCSTSKGGCKLFELVGGAT------GITILAKELLPLQNAGLQKCMAFSFDGSKLAVGGVDGCLRIMEWPNLSVILDEPKAHKSIRDMDFSLDSEFLATTSTDGSARIWKAEDGFPLSTLERSGDE 208          
The following BLAST results are available for this feature:
BLAST of FC888655 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
STLP2_ARATH1.316e-5046.25SEC12-like protein 2 OS=Arabidopsis thaliana GN=ST... [more]
PHF1_ARATH5.391e-2030.85SEC12-like protein 1 OS=Arabidopsis thaliana GN=PH... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA95AB03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA95AB03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC888655 ID=FC888655; Name=FC888655; organism=Citrus clementina; type=EST; length=786bp
ATGGGTATCAGGAGCAGGAATGAAGAATCTCACAACTTGCAGAAATACTG
GCGTGCCGTTGTACGGTGCCGGTTGGGTTCCGTACGATCAAGTCATCAGA
TCCACGCACAAGCCACCTAAACAACAAGACGATGACGACAAAGAGGAAGA
CCAGCATGGATCCAAAGACGAAGCTGTCGCCGACAAATCCGACGATATTC
GCCGCAACTACTACGTTGTTTTGGCCGGCGGTGGTGGTGCGGGCAACAGC
GGCATCCGCAACGCCGTCCTTTTGTCTCACTTCGATTTCGCCTCCAATTC
CCTCTCCGATCAGCCGGTGGCTGAGCTTCGAACTGATTCTGATTTGCCTT
ATCGAATGGCTATTCACCCGCACGGTGATGGCATTATTTGTGCACTGCAA
AATAGCTGCAGATTGTTTGAGTGGGATGAAGTGGAGAACACTGAAATCCG
TAGACTGGGTGTGAAAATTTCAGAGAAAGTGCTCAGCCAGTTAGAAAATG
TTGGACAACAGTTAGCACTAACGTTCGACTCTGAGGGTACTATATTTGCT
GCTGGTAGTGAGAATGGCAATTTAAGGGTTTTCAAGTGGCCTAGCCTGGA
AATCATTCTGAATGAGTCTGAAGCCCATGCTTCTGTGAAGGATTTGTCTT
TCAGCCCTGATGGAAAATTCCTTGTCTCCTTGGGAAATCGTGGTCCTGGT
AGGGTTTGGGATCTAGCTTCTTCAGCCGTTGCAACTCCTCTAGCGAAGGA
AAATGATGAAACTTTTTGCTTCTTGGAGGTTCTCTC
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