FC896012

Overview
NameFC896012
Unique NameFC896012
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length751
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC896012 vs. ExPASy Swiss-Prot
Match: FCSA_DICDI (Fatty acyl-CoA synthetase A OS=Dictyostelium discoideum GN=fcsA PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.503e-19
Identity = 52/146 (35.62%), Postives = 86/146 (58.90%), Query Frame = 2
Query:  260 RRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANV-SSSQKKEAEELGVSCFSWEEFLQLG 694
            R  ++DGK G Y W++Y++    A   GSA+   G+N GDR GI+  N PEW+++  A  + ++  V LY TLGANA+E+++NH+E+S+   +   +  ILS +P     +KTIVS+  +  ++  K  +   V  +   +F +LG
Sbjct:   74 RELLADGKRGDYKWISYKQACIRANNIGSALVQLGLNKGDRIGIFSINRPEWVLSDMAAMNHSLVPVALYATLGANAIEYVVNHSEISVLLCEGKNVEKILS-MPGTT--IKTIVSYDPLPQATLDKFKDNENVKLYLLSDFEKLG 216          
BLAST of FC896012 vs. ExPASy Swiss-Prot
Match: ACSL1_CAVPO (Long-chain-fatty-acid--CoA ligase 1 OS=Cavia porcellus GN=ACSL1 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.051e-17
Identity = 58/175 (33.14%), Postives = 92/175 (52.57%), Query Frame = 2
Query:  242 NNQMLGRRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRG--VNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSIL--SCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELP-PKKKTNISTIMY 751
            N   LG RK       PY WL+Y++V D +   GSA+  +G   +P    GI+  N PEW+I  +AC + ++  VPLYDTLGA+A+ +I+N AE+S+ F  + +   IL  S   +    LK IV   +  S   ++ ++ GV   S +    LG  +   P P +  +++ I +
Sbjct:  105 NGPCLGSRKPDQ----PYEWLSYKQVEDLSECIGSALLQKGFQASPDQFIGIFAQNRPEWVIIEQACFAYSMVVVPLYDTLGADAITYIVNKAELSVIFADKPEKARILLESVENKLTPGLKIIVVMDSYGSELVEQGKKCGVEVISLKAMEGLGRANRRKPKPPEPDDLAVICF 275          
BLAST of FC896012 vs. ExPASy Swiss-Prot
Match: ACSL1_MOUSE (Long-chain-fatty-acid--CoA ligase 1 OS=Mus musculus GN=Acsl1 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.518e-16
Identity = 56/178 (31.46%), Postives = 91/178 (51.12%), Query Frame = 2
Query:  242 NNQMLGRRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDR--CGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSIL-----SCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELP-PKKKTNISTIMY 751
            N   LG RK +     PY W++Y+EV + A   GS +  +G  P      G++  N PEW+I  + C S ++  VPLYDTLGA+A+ +I+N AE+S+ F  + +   +L     + L  C   LK IV   +  S   +  ++ GV   S +    LG ++   P P +  +++ I +
Sbjct:  106 NGPCLGSRKPNQ----PYEWISYKEVAELAECIGSGLIQKGFKPCSEQFIGLFSQNRPEWVIVEQGCFSYSMVVVPLYDTLGADAITYIVNKAELSVIFADKPEKAKLLLEGVENKLTPC---LKIIVIMDSYGSDLVERGKKCGVEIISLKALEDLGRVNRVKPKPPEPEDLAIICF 276          
BLAST of FC896012 vs. ExPASy Swiss-Prot
Match: FCSB_DICDI (Fatty acyl-CoA synthetase B OS=Dictyostelium discoideum GN=fcsB PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.590e-16
Identity = 51/181 (28.18%), Postives = 88/181 (48.62%), Query Frame = 2
Query:  224 SAKRIPNNQMLG-RRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGT----LDCELPPKKKTNISTIMY 751
            S K+    +  G R+K S+G +G + W++Y    +        +   G+ P  + GI+  N  EW+I   A   Q+   V  Y+TLG  ++ ++  HAE+ +AF     +   L  + +    LKTI+ F ++       A+ELGV+ ++++E ++ G          PP   T +STIMY
Sbjct:   72 SCKKYGERKCFGERKKDSNGNLGKFEWISYNTYLERCEYIQQGLCELGLKPKSKVGIFSKNRLEWLIVHSASFIQSYCVVSFYETLGVESLSYVTEHAEIGLAFCSAETLQKTLD-IAKGVKVLKTIICFDSIDKEHYNIAKELGVTLYTYDEIMKKGKEANGKHKHTPPTPDT-LSTIMY 250          
BLAST of FC896012 vs. ExPASy Swiss-Prot
Match: ACSL5_RAT (Long-chain-fatty-acid--CoA ligase 5 OS=Rattus norvegicus GN=Acsl5 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.842e-16
Identity = 53/175 (30.29%), Postives = 86/175 (49.14%), Query Frame = 2
Query:  242 NNQMLGRRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDR--CGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSIL--SCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELP-PKKKTNISTIMY 751
            N   LG RK +     PY W++Y++V D A   GS +  +G  P      GI+  N PEW+I+  AC + ++  VPLYDTLGA A+ ++IN A++S+      +  ++L  +        LKT++          K  E+ G+   S  +   LG  + + P P    ++S I +
Sbjct:   90 NGPCLGYRKPNQ----PYKWISYKQVSDRAEYLGSCLLHKGYKPSQDQFIGIFAQNRPEWVISELACYTYSMVAVPLYDTLGAEAIIYVINRADISVVICDTPQKATMLIENVEKDLTPGLKTVILMDPFDDDLMKRGEKCGIEMLSLHDAENLGKENFKKPMPPNPEDLSVICF 260          
BLAST of FC896012 vs. ExPASy Swiss-Prot
Match: ACSL1_HUMAN (Long-chain-fatty-acid--CoA ligase 1 OS=Homo sapiens GN=ACSL1 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.332e-15
Identity = 54/175 (30.86%), Postives = 84/175 (48.00%), Query Frame = 2
Query:  242 NNQMLGRRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVN--PGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSIL--SCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELP-PKKKTNISTIMY 751
            N   LG RK       PY WL+Y++V + +   GSA+  +G    P    GI+  N PEW+I  + C + ++  VPLYDTLG  A+ +I+N AE+S+ FV + +   +L      +    LK IV      S   +  +  GV   S +    LG  +   P P    +++ I +
Sbjct:  105 NGPCLGSRKPDQ----PYEWLSYKQVAELSECIGSALIQKGFKTAPDQFIGIFAQNRPEWVIIEQGCFAYSMVIVPLYDTLGNEAITYIVNKAELSLVFVDKPEKAKLLLEGVENKLIPGLKIIVVMDAYGSELVERGQRCGVEVTSMKAMEDLGRANRRKPKPPAPEDLAVICF 275          
BLAST of FC896012 vs. ExPASy Swiss-Prot
Match: ACSL5_MOUSE (Long-chain-fatty-acid--CoA ligase 5 OS=Mus musculus GN=Acsl5 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.088e-14
Identity = 53/175 (30.29%), Postives = 84/175 (48.00%), Query Frame = 2
Query:  242 NNQMLGRRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDR--CGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSIL--SCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELP-PKKKTNISTIMY 751
            N   LG RK +     PY W++Y++V D A   GS +  +G         GI+  N PEW+I+  AC + ++  VPLYDTLG  A+ F+IN A++ +      +  ++L  +        LKTI+          K  E+ GV   S  +   +G  + + P P K  ++S I +
Sbjct:   90 NGPCLGYRKPNQ----PYKWISYKQVSDRAEYLGSCLLHKGYKSSQDQFVGIFAQNRPEWVISELACYTYSMVAVPLYDTLGTEAIIFVINRADIPVVICDTPQKATMLVENVEKGLTPGLKTIILMDPFDDDLMKRGEKCGVEMLSLHDAENIGKENFKKPVPPKPEDLSVICF 260          
BLAST of FC896012 vs. ExPASy Swiss-Prot
Match: ACSL1_RAT (Long-chain-fatty-acid--CoA ligase 1 OS=Rattus norvegicus GN=Acsl1 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.424e-14
Identity = 51/174 (29.31%), Postives = 88/174 (50.57%), Query Frame = 2
Query:  254 LGRRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDR--CGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSIL-----SCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELP-PKKKTNISTIMY 751
            LG RK +     PY W++Y++V + A   GSA+  +G  P      GI+  N PEW+   + C + ++  VPLYDTLG +A+ +I+N AE+S+ F  + +   +L     + L  C   LK IV   +  +   +  ++ GV     +    LG ++   P P +  +++ I +
Sbjct:  110 LGSRKPNQ----PYEWISYKQVAEMAECIGSALIQKGFKPCSEQFIGIFSQNRPEWVTIEQGCFTYSMVVVPLYDTLGTDAITYIVNKAELSVIFADKPEKAKLLLEGVENKLTPC---LKIIVIMDSYDNDLVERGQKCGVEIIGLKALEDLGRVNRTKPKPPEPEDLAIICF 276          
BLAST of FC896012 vs. ExPASy Swiss-Prot
Match: LCF2_SCHPO (Long-chain-fatty-acid--CoA ligase 2 OS=Schizosaccharomyces pombe GN=SPBP4H10.11c PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.203e-13
Identity = 59/260 (22.69%), Postives = 112/260 (43.08%), Query Frame = 2
Query:   71 MSETYTVKVEEARPAADGKPSAGPVYRCIYAKDGLLESPV-GLESPWQFFCDSAKRIPNNQMLGRRKV-------------------------SDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEEL------GVSCFSWEEFLQLGTLDCELP-PKKKTNISTIMY 751
            + + Y V+ ++++     +P    +YR I++   LL++P  G+ + +   C +AK     Q +G RK+                         +  ++GPY ++++ +VY+ A+  GS + + G+        + +   +W    + C+SQAI  V  Y+TLG + +   ++  +    F   N IP +L  L +      T V     SS+  ++  EL       V   +++  L LG    + P P K  +I   MY
Sbjct:    3 IKDYYCVETKDSK-----QPGESYIYRSIHSAGKLLDTPEDGVSTVYDLLCTAAKNHGEKQAMGSRKLIKENREEREIIRKVDNEEVVEKKLWTTYELGPYEYISFNKVYEIALALGSGLVASGITSETTMLFFAATSAKWFTTAQGCSSQAIPIVTAYETLGEDGIYTSLDECKSRAIFTDPNLIPKLLGPLKQ-----STWVKLIVCSSTPSEDLVELVKSTAPDVEIITYDNLLSLGKEKPQPPHPPKADDICCYMY 252          
BLAST of FC896012 vs. ExPASy Swiss-Prot
Match: ACSL5_HUMAN (Long-chain-fatty-acid--CoA ligase 5 OS=Homo sapiens GN=ACSL5 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.500e-13
Identity = 54/175 (30.86%), Postives = 82/175 (46.86%), Query Frame = 2
Query:  242 NNQMLGRRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGV--NPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVS--IAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELP-PKKKTNISTIMY 751
            N   LG RK +     PY WL+Y++V D A   GS +  +G   +P    GI+  N PEWII+  AC + ++  VPLYDTLG  A+  I+N A+++  I    +  +  I +        LK I+         K+  E+ G+   S  +   LG      P P    ++S I +
Sbjct:   90 NGPCLGYRKPNQ----PYRWLSYKQVSDRAEYLGSCLLHKGYKSSPDQFVGIFAQNRPEWIISELACYTYSMVAVPLYDTLGPEAIVHIVNKADIAMVICDTPQKALVLIGNVEKGFTPSLKVIILMDPFDDDLKQRGEKSGIEILSLYDAENLGKEHFRKPVPPSPEDLSVICF 260          
The following BLAST results are available for this feature:
BLAST of FC896012 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
FCSA_DICDI2.503e-1935.62Fatty acyl-CoA synthetase A OS=Dictyostelium disco... [more]
ACSL1_CAVPO1.051e-1733.14Long-chain-fatty-acid--CoA ligase 1 OS=Cavia porce... [more]
ACSL1_MOUSE1.518e-1631.46Long-chain-fatty-acid--CoA ligase 1 OS=Mus musculu... [more]
FCSB_DICDI2.590e-1628.18Fatty acyl-CoA synthetase B OS=Dictyostelium disco... [more]
ACSL5_RAT9.842e-1630.29Long-chain-fatty-acid--CoA ligase 5 OS=Rattus norv... [more]
ACSL1_HUMAN8.332e-1530.86Long-chain-fatty-acid--CoA ligase 1 OS=Homo sapien... [more]
ACSL5_MOUSE1.088e-1430.29Long-chain-fatty-acid--CoA ligase 5 OS=Mus musculu... [more]
ACSL1_RAT2.424e-1429.31Long-chain-fatty-acid--CoA ligase 1 OS=Rattus norv... [more]
LCF2_SCHPO1.203e-1322.69Long-chain-fatty-acid--CoA ligase 2 OS=Schizosacch... [more]
ACSL5_HUMAN3.500e-1330.86Long-chain-fatty-acid--CoA ligase 5 OS=Homo sapien... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA59AG03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA59AG03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC896012 ID=FC896012; Name=FC896012; organism=Citrus clementina; type=EST; length=751bp
TTAAATTCAACAAATTACTCTAAAAGCTTATTAGCTGCATAATTTCTCGC
ATATTTTGTTGGTGGCAACAATGTCTGAGACCTATACTGTCAAAGTTGAA
GAAGCAAGGCCTGCTGCCGATGGCAAGCCGTCGGCCGGCCCGGTTTATCG
GTGCATTTATGCGAAAGATGGGTTACTAGAGTCACCGGTCGGTTTGGAGT
CTCCATGGCAGTTTTTTTGTGATTCTGCCAAAAGGATTCCAAATAACCAA
ATGCTGGGTCGACGCAAAGTCAGTGACGGAAAGGTTGGTCCTTATGTGTG
GCTCACATACCAAGAGGTCTATGATGCTGCGATTCGTTTCGGTTCCGCCA
TGAGGAGCCGTGGTGTCAATCCTGGAGATCGTTGCGGTATTTATGGATCT
AATTGCCCTGAATGGATTATAGCTATGGAGGCTTGTAATAGCCAGGCCAT
AACGTATGTACCACTATATGACACCCTAGGTGCTAATGCGGTGGAGTTCA
TCATCAATCATGCTGAAGTTTCAATAGCTTTTGTTCAGGAGAACAAAATC
CCTTCTATTCTATCTTGCCTTCCAAGGTGTTGTTTGTACTTAAAAACTAT
TGTCAGCTTTGCAAATGTTTCTAGCTCACAGAAGAAGGAAGCTGAAGAAC
TTGGGGTCTCTTGCTTTTCTTGGGAGGAATTTCTACAGTTGGGAACTCTG
GATTGTGAACTTCCACCGAAAAAGAAGACCAACATTTCCACAATAATGTA
T
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