FC897252

Overview
NameFC897252
Unique NameFC897252
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length989
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC897252 vs. ExPASy Swiss-Prot
Match: E132_ARATH (Glucan endo-1,3-beta-glucosidase 2 OS=Arabidopsis thaliana GN=At1g66250 PE=1 SV=2)

HSP 1 Score: 211.846 bits (538), Expect = 4.817e-54
Identity = 104/187 (55.61%), Postives = 151/187 (80.75%), Query Frame = 2
Query:  389 LFIIFYLTVLNTAKAADP-DKEPFVGVNIGTDVSNLLSPTDLVSFLQVQKITHIRLYDADPDLLKALAKTKIRVIVSVPNNQLLAIGSSNTTAASWIGKNVIAYYPETLITAIAVGDEVLTTVPSSAPILLPAIESLYSALVAANLHTQIKISTPHAASIILDPFPPSXAFFNQSLSSVMLPLLQFL 946
            L +   L VL +A  + P D+  ++GVNIGTD+S++  PT +V+ L+ Q+I HIRLY+ADP LL ALA T I+VI+S+PN+QLL IG SN+TAA+W+ +NVIA+YP T+ITA++VG EVLT++ ++AP+L+ AI+++++AL++ANL   IK+STP + S+ILDPFPPS AFFN+SL++V++PLL FL
Sbjct:    8 LLLSLSLLVLASASPSPPADEGSYIGVNIGTDLSDMPHPTQVVALLKAQEIRHIRLYNADPGLLIALANTGIKVIISIPNDQLLGIGQSNSTAANWVKRNVIAHYPATMITAVSVGSEVLTSLSNAAPVLVSAIKNVHAALLSANLDKLIKVSTPLSTSLILDPFPPSQAFFNRSLNAVIVPLLSFL 194          
BLAST of FC897252 vs. ExPASy Swiss-Prot
Match: E133_ARATH (Glucan endo-1,3-beta-glucosidase 3 OS=Arabidopsis thaliana GN=At2g01630 PE=1 SV=2)

HSP 1 Score: 192.971 bits (489), Expect = 1.322e-49
Identity = 97/190 (51.05%), Postives = 137/190 (72.11%), Query Frame = 2
Query:  389 LFIIFYLTVLNTAKAADPDKEPFVGVNIGTDVSNLLSPTDLVSFLQVQKITHIRLYDADPDLLKALAKTKIRVIVSVPNNQLLAIGSSNTTAASWIGKNVIAYYPETLITAIAVGDEVLTTVPSSAPILLPAIESLYSALVAANLHTQIKISTPHAASIILDPFPPSXAFFNQSLSSVMLPLLQFLSKLG 958
            L ++F     ++A + D      +GVNIGT+V+N+ SPT +V+ L+ Q I  +RLYDAD  +L A A T ++VI+SVPN+QLL I  SN TAA+W+ +NV AYYP T IT IAVG EVLT++ ++A +L+ A++ + +ALV ANL  QIK+STPH+++IILD FPPS AFFN++   V++PLL+FL   G
Sbjct:    4 LLLLFLFLFASSALSQDS----LIGVNIGTEVTNMPSPTQVVALLKSQNINRVRLYDADRSMLLAFAHTGVQVIISVPNDQLLGISQSNATAANWVTRNVAAYYPATNITTIAVGSEVLTSLTNAASVLVSALKYIQAALVTANLDRQIKVSTPHSSTIILDSFPPSQAFFNKTWDPVIVPLLKFLQSTG 189          

HSP 2 Score: 25.7942 bits (55), Expect = 1.322e-49
Identity = 8/12 (66.67%), Postives = 12/12 (100.00%), Query Frame = 1
Query:  952 TGAPLMMNLYPY 987
            TG+PL++N+YPY
Sbjct:  188 TGSPLLLNVYPY 199          
BLAST of FC897252 vs. ExPASy Swiss-Prot
Match: E134_ARATH (Glucan endo-1,3-beta-glucosidase 4 OS=Arabidopsis thaliana GN=At3g13560 PE=1 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 7.708e-44
Identity = 90/188 (47.87%), Postives = 131/188 (69.68%), Query Frame = 2
Query:  395 IIFYLTVLNTAKAADPDKEPFVGVNIGTDVSNLLSPTDLVSFLQVQKITHIRLYDADPDLLKALAKTKIRVIVSVPNNQLLAIGSSNTTAASWIGKNVIAYYPETLITAIAVGDEVLTTVPSSAPILLPAIESLYSALVAANLHTQIKISTPHAASIILDPFPPSXAFFNQSLSSVMLPLLQFLSKLG 958
            ++  L++L  + AA      F+GVNIGTD++N+  P+D+V+ L+ Q+ITH+RLYDA+  +LKA A T I V+V V N ++L IG   + AA+W+ KNV AY P T ITAIAVG EVLTT+P  APIL  A+ +++ ALVA+NL+ ++K+S+P +  I+  PFPPS + F+ S ++ +  LLQFL   G
Sbjct:   11 LLLLLSILACSNAA------FIGVNIGTDLTNMPPPSDIVTLLKSQQITHVRLYDANSHMLKAFANTSIEVMVGVTNEEILKIGRFPSAAAAWVNKNVAAYIPSTNITAIAVGSEVLTTIPHVAPILASALNNIHKALVASNLNFKVKVSSPMSMDIMPKPFPPSTSTFSPSWNTTVYQLLQFLKNTG 192          
BLAST of FC897252 vs. ExPASy Swiss-Prot
Match: E131_ARATH (Glucan endo-1,3-beta-glucosidase 1 OS=Arabidopsis thaliana GN=At1g11820 PE=1 SV=2)

HSP 1 Score: 116.701 bits (291), Expect = 1.813e-28
Identity = 58/90 (64.44%), Postives = 72/90 (80.00%), Query Frame = 2
Query:  689 IAYYPETLITAIAVGDEVLTTVPSSAPILLPAIESLYSALVAANLHTQIKISTPHAASIILDPFPPSXAFFNQSLSSVMLPLLQFLSKLG 958
            + ++  TL+   A    +   VPSSAP+LLPAIESLY+ALVA+NLHTQIK+STPHAASI+LD FPPS A+FNQ+  S+M+PLLQFLSK G
Sbjct:   12 VLFFFFTLLLISANSSSLSHNVPSSAPLLLPAIESLYNALVASNLHTQIKVSTPHAASIMLDTFPPSQAYFNQTWHSIMVPLLQFLSKTG 101          

HSP 2 Score: 31.187 bits (69), Expect = 1.813e-28
Identity = 12/13 (92.31%), Postives = 13/13 (100.00%), Query Frame = 1
Query:  949 KTGAPLMMNLYPY 987
            KTG+PLMMNLYPY
Sbjct:   99 KTGSPLMMNLYPY 111          
BLAST of FC897252 vs. ExPASy Swiss-Prot
Match: E1312_ARATH (Glucan endo-1,3-beta-glucosidase 12 OS=Arabidopsis thaliana GN=At4g29360 PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 8.787e-28
Identity = 61/163 (37.42%), Postives = 101/163 (61.96%), Query Frame = 2
Query:  458 VGVNIGTDVSNLLSPTDLVSFLQVQKITHIRLYDADPDLLKALAKTKIRVIVSVPNNQLLAIGSSNTTAASWIGKNVIAYYPETLITAIAVGDEVLTTVPSSAPILLPAIESLYSALVAANLHTQIKISTPHAASIILDPFPPSXAFFNQSLSSVMLPLLQFL 946
            +G+  G +  NL SP  +   +Q   I  +R+YDA+ D+LKA A T I +++ VPN  LLA     +   +W+  N++ YYP T IT+I+VG EV     ++  ++LPA+ ++++AL  + L  +IKIS+ H+ +I+   FPPS A F++  S+ + P+L+FL
Sbjct:   27 IGICYGRNADNLPSPNRVSELIQHLNIKFVRIYDANIDVLKAFANTGIELMIGVPNADLLAFAQFQSNVDTWLSNNILPYYPSTKITSISVGLEVTEAPDNATGLVLPAMRNIHTALKKSGLDKKIKISSSHSLAILSRSFPPSSASFSKKHSAFLKPMLEFL 189          

HSP 2 Score: 21.1718 bits (43), Expect = 8.787e-28
Identity = 7/14 (50.00%), Postives = 11/14 (78.57%), Query Frame = 1
Query:  946 VKTGAPLMMNLYPY 987
            V+  +P M++LYPY
Sbjct:  190 VENESPFMIDLYPY 203          
BLAST of FC897252 vs. ExPASy Swiss-Prot
Match: EA6_ARATH (Probable glucan endo-1,3-beta-glucosidase A6 OS=Arabidopsis thaliana GN=A6 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 3.843e-27
Identity = 62/166 (37.35%), Postives = 104/166 (62.65%), Query Frame = 2
Query:  458 VGVNIGTDVSNLLSPTDLVSFLQVQKITHIRLYDADPDLLKALAKTKIRVIVSVPNNQLLAIGSSNTTAASWIGKNVIAYYPETLITAIAVGDEVLTTVPSSAPI-LLPAIESLYSALVAANLHTQIKISTPHAASIILDPFPPSXAFFNQSLSS-VMLPLLQFLS 949
            +G+N G   +NL SP   ++F++  K  H++LYDADP+ L  L++T + V ++VPN+Q+ A+ S+ T A  W+  N++ YYP+T I  + VG+E+L+    +  + L+PA+  + ++L    +H  IK+ TP A   +   FPPS   F + ++  VMLPLL+FL+
Sbjct:   42 IGINYGRRGNNLPSPYQSINFIKSIKAGHVKLYDADPESLTLLSQTNLYVTITVPNHQITALSSNQTIADEWVRTNILPYYPQTQIRFVLVGNEILSYNSGNVSVNLVPAMRKIVNSLRLHGIH-NIKVGTPLAMDSLRSSFPPSNGTFREEITGPVMLPLLKFLN 206          
BLAST of FC897252 vs. ExPASy Swiss-Prot
Match: E137_ARATH (Glucan endo-1,3-beta-glucosidase 7 OS=Arabidopsis thaliana GN=At4g34480 PE=1 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 2.491e-26
Identity = 66/193 (34.20%), Postives = 105/193 (54.40%), Query Frame = 2
Query:  383 LTLFIIFYLTVLNTAKAADPDKEPFVGVNIGTDVSNLLSPTDLVSFLQVQKITHIRLYDADPDLLKALAKTKIRVIVSVPNNQLLAIGSSNTTAASWIGKNVIAYYPETLITAIAVGDEVL-TTVPSSAPILLPAIESLYSALVAANLHTQIKISTPHAASIILDPFPPSXAFFNQSLSSVMLPLLQFLSKLG 958
            + L I  Y  ++  +       EPF+GVN G    NL  P++ V  LQ   I  +RLY ADP ++KALA T + +++   N  + ++ S    A  WI  NV+ +YP + I  I VG+E+L +  P+    LLPA++++  AL A +L  +IK+ST ++ +++    PPS   F     + +  +LQFLS  G
Sbjct:    1 MALSISIYFLLIFLSHFPSSHAEPFIGVNYGQVADNLPPPSETVKLLQSTSIQKVRLYGADPAIIKALAGTGVGIVIGAANGDVPSLASDPNAATQWINSNVLPFYPASKIMLITVGNEILMSNDPNLVNQLLPAMQNVQKALEAVSLGGKIKVSTVNSMTVLGSSDPPSSGSFAAGYQTGLKGILQFLSDTG 193          
BLAST of FC897252 vs. ExPASy Swiss-Prot
Match: E1311_ARATH (Glucan endo-1,3-beta-glucosidase 11 OS=Arabidopsis thaliana GN=At1g32860 PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 9.466e-26
Identity = 71/199 (35.68%), Postives = 106/199 (53.27%), Query Frame = 2
Query:  359 LASMENPKLTLFIIFYLTVLNTAKAADPDKEPFVGVNIGTDVSNLLSPTDLVSFLQVQKITHIRLYDADPDLLKALAKTKIRVIVSVPNNQLLAIGSSNTTAASWIGKNVIAYYPETLITAIAVGDEVLTTVPSSAPI-LLPAIESLYSALVAANLHTQIKISTPHAASIILDPFPPSXAFFNQSLSSVMLPLLQFLSK 952
            L S     L   I   L +L T   +       +GVN G    NL SPTD++  ++    T ++LYDA+P +LKA + T I  I+ +  N+ L+     + A +WI +NV  + P T IT I +G+E+L    SS    LLPA++ ++SAL+ A L  QI ++T H+ SI+   FPPS   F   L   + P+L+F  K
Sbjct:    3 LTSFHRSSLLFLISLTLIILPTTTTS-------IGVNYGQIGDNLPSPTDVIPLIKSIGATKVKLYDANPQILKAFSNTGIEFIIGL-GNEYLSKMKDPSKALTWIKQNVTPFLPATNITCITIGNEILALNDSSLTTNLLPAMQGVHSALITAGLSDQISVTTAHSLSILKSSFPPSAGEFQPDLLDSLTPILEFHRK 193          
BLAST of FC897252 vs. ExPASy Swiss-Prot
Match: E1310_ARATH (Glucan endo-1,3-beta-glucosidase 10 OS=Arabidopsis thaliana GN=At5g42100 PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 8.358e-25
Identity = 63/168 (37.50%), Postives = 97/168 (57.74%), Query Frame = 2
Query:  458 VGVNIGTDVSNLLSPTDLVSFLQVQKITHIRLYDADPDLLKALAKTKIRVIVSVPNNQLLAIGSSNTTAASWIGKNVIAYYPETLITAIAVGDEVLTTVPSS-APILLPAIESLYSALVAANLHTQIKISTPHAASIILDPFPPSXAFFNQSLSSVMLPLLQFLSKLG 958
            +G+N G   +NL  P +++  L+    T ++LYDADP  L+A A +   + V++  N+ LA  S    A  W+ +NV AY P T I AI VG+EVLT+  S+    L PA++S++ ALV   L+ QI ++T H+ +I+   +PPS   F + L   + P+L F  K G
Sbjct:   27 IGINYGQVANNLPPPKNVIPLLKSVGATKVKLYDADPQALRAFAGSGFELTVAL-GNEYLAQMSDPIKAQGWVKENVQAYLPNTKIVAIVVGNEVLTSNQSALTAALFPAMQSIHGALVDCGLNKQIFVTTAHSLAILDVSYPPSATSFRRDLLGSLTPILDFHVKTG 193          

HSP 2 Score: 25.7942 bits (55), Expect = 8.358e-25
Identity = 8/14 (57.14%), Postives = 13/14 (92.86%), Query Frame = 1
Query:  946 VKTGAPLMMNLYPY 987
            VKTG+P+++N YP+
Sbjct:  190 VKTGSPILINAYPF 203          
BLAST of FC897252 vs. ExPASy Swiss-Prot
Match: E13B_PEA (Glucan endo-1,3-beta-glucosidase OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.248e-22
Identity = 56/175 (32.00%), Postives = 95/175 (54.29%), Query Frame = 2
Query:  440 PDKEPFVGVNIGTDVSNLLSPTDLVSFLQVQKITHIRLYDADPDLLKALAKTKIRVIVSVPNNQLLAIGSSNTTAASWIGKNVIAYYPETLITAIAVGDEVLTTVPSS--APILLPAIESLYSALVAANLHTQIKISTPHAASIILDPFPPSXAFFNQSLSSVMLPLLQFLSKLG 958
            P  +  +G+  G   +NL    ++++  +   I  +RLYD +   L AL  + I +I+ +PN+ L  + ++  +A  W+ +NV+ +YP   I  IAVG+EV     SS  A  +LPA +++Y A+ A  LH QIK++T    ++I + FPPS   F   + S + P + +L   G
Sbjct:   28 PTTDAQIGICYGMMGNNLPPANEVIALYKANNIKRMRLYDPNQPALNALRDSGIELILGIPNSDLQTLATNQDSARQWVQRNVLNFYPSVKIKYIAVGNEVSPVGGSSWLAQYVLPATQNVYQAIRAQGLHDQIKVTTAIDMTLIGNSFPPSKGSFRSDVRSYLDPFIGYLVYAG 202          

HSP 2 Score: 26.1794 bits (56), Expect = 1.248e-22
Identity = 10/19 (52.63%), Postives = 13/19 (68.42%), Query Frame = 1
Query:  931 FASVSVKTGAPLMMNLYPY 987
            F    V  GAPL++N+YPY
Sbjct:  194 FIGYLVYAGAPLLVNVYPY 212          
The following BLAST results are available for this feature:
BLAST of FC897252 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
E132_ARATH4.817e-5455.61Glucan endo-1,3-beta-glucosidase 2 OS=Arabidopsis ... [more]
E133_ARATH1.322e-4951.05Glucan endo-1,3-beta-glucosidase 3 OS=Arabidopsis ... [more]
E134_ARATH7.708e-4447.87Glucan endo-1,3-beta-glucosidase 4 OS=Arabidopsis ... [more]
E131_ARATH1.813e-2864.44Glucan endo-1,3-beta-glucosidase 1 OS=Arabidopsis ... [more]
E1312_ARATH8.787e-2837.42Glucan endo-1,3-beta-glucosidase 12 OS=Arabidopsis... [more]
EA6_ARATH3.843e-2737.35Probable glucan endo-1,3-beta-glucosidase A6 OS=Ar... [more]
E137_ARATH2.491e-2634.20Glucan endo-1,3-beta-glucosidase 7 OS=Arabidopsis ... [more]
E1311_ARATH9.466e-2635.68Glucan endo-1,3-beta-glucosidase 11 OS=Arabidopsis... [more]
E1310_ARATH8.358e-2537.50Glucan endo-1,3-beta-glucosidase 10 OS=Arabidopsis... [more]
E13B_PEA1.248e-2232.00Glucan endo-1,3-beta-glucosidase OS=Pisum sativum ... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA98DA02RM1 IVIA1 Citrus clementina cDNA clone IC0AAA98DA02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC897252 ID=FC897252; Name=FC897252; organism=Citrus clementina; type=EST; length=989bp
AAACAAACTAATAAAGAAGTGGAATTTGCTAGAGCATTTTTACCATACTG
TCGGCTCAGTCACAAGTCACAAGGTCAATTTGGTGATCGCCAGAGATACT
GAGCTAGTAAATTGAAAAACACATCTTTTGGGAAGCAAGAATCGAAGTTA
GCCCCCAAAATCAAGATATCTTTTGATGAATGTCCTGTTTCTTCTTCATA
CTGTACATTTCTCAAGTCAGTAACCAAAAACAAATCAAAGCCTCTCAAGT
AAGACCCGCCAAGAACTCCGAAATATTAGAGAAAATAATCCCAAAAGATA
ATGCAAGGTTCTGGAGCTGAACCTCCAGAAGCAGGGGATAGAGAAGTAAA
GCTCCATCTTGGCTTCAATGGAAAACCCTAAGCTGACCCTTTTTATCATC
TTCTACCTTACGGTACTTAACACAGCTAAAGCAGCTGACCCAGACAAGGA
ACCATTTGTTGGTGTGAACATAGGCACCGATGTTTCAAATTTACTCTCTC
CCACGGACTTGGTTTCCTTCTTGCAAGTTCAGAAAATCACACACATCAGG
CTTTATGATGCAGACCCAGACTTACTCAAAGCACTGGCTAAAACCAAGAT
CCGGGTCATTGTCAGTGTGCCCAACAACCAGCTTCTTGCAATTGGGTCCT
CTAACACCACCGCAGCTTCTTGGATTGGTAAAAATGTTATTGCTTATTAC
CCTGAAACTCTCATTACTGCCATTGCTGTAGGTGATGAGGTCTTAACAAC
TGTACCCTCTTCAGCTCCAATTTTACTTCCAGCCATTGAGTCCCTCTATA
GTGCTTTAGTGGCTGCAAATTTGCACACCCAGATCAAGATTTCAACTCCT
CATGCAGCTTCTATAATTCTTGATCCATTTCCTCCTTCTCANGCTTTTTT
TAACCAGAGCTTGAGTTCAGTAATGTTGCCTTTGCTTCAGTTTCTGTCAA
AACTGGGGCACCTTTAATGATGAATCTTTATCCTTATAA
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