FC899856

Overview
NameFC899856
Unique NameFC899856
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length909
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC899856 vs. ExPASy Swiss-Prot
Match: GPMB_SERP5 (Probable phosphoglycerate mutase gpmB OS=Serratia proteamaculans (strain 568) GN=gpmB PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.883e-15
Identity = 63/190 (33.16%), Postives = 91/190 (47.89%), Query Frame = 2 
Query:  242 RVVLVRHGQSTWNAEGRIQGSSDFSVLTKKGEAQAETSRQMLFDESFDVCFSSPLIRSKRTAEIIWGNRKEEILTDYDLREIDLYSFQGLLKHEGKAKFGPAYHQWQVNPANFSIDGHYP----VRELWARARNCWTK-ILAHESKSVLVVAHNAVNQALVATAIGLGTGFFRILLQSNCGVSVLDFTPS 796
            +V LVRHG++ WNA  RIQG SD S LT  GE QA    Q +  +      +S L R++RTA+II      E++ D  LRE+ +    G+L+        P   QW+    + + DG  P    + EL  R R      ++  E    L+V+H      L++T +GL     R L   NC +S +D   S
Sbjct:    3 QVYLVRHGETEWNAARRIQGQSD-SPLTANGEHQARLVAQRVSKQGITHVITSDLGRTRRTAQIIAEACGCEVINDPRLRELHM----GVLEERLIDSLTPQEEQWRKQMVDGTADGRIPQGESMSELGDRMREALESCLMLPEGSKPLIVSHGIALGCLISTVLGLPAYAERRLRLRNCSLSRVDHQQS 187
[Close]
BLAST of FC899856 vs. ExPASy Swiss-Prot
Match: GPMB_SALTI (Probable phosphoglycerate mutase gpmB OS=Salmonella typhi GN=gpmB PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.624e-15
Identity = 67/190 (35.26%), Postives = 90/190 (47.37%), Query Frame = 2 
Query:  242 RVVLVRHGQSTWNAEGRIQGSSDFSVLTKKGEAQAETSRQMLFDESFDVCFSSPLIRSKRTAEIIWGNRKEEILTDYDLREIDLYSFQGLLKHEGKAKFGPAYHQWQVNPANFSIDGHYP----VRELWARARNCWTKIL-AHESKSVLVVAHNAVNQALVATAIGLGTGFFRILLQSNCGVSVLDFTPS 796
            +V LVRHG++ WNAE RIQG SD S LT KGE QA    +           SS L R+KRTAEII      +I  D+ LRE+D+    G+L+             W+    N + DG  P    ++EL  R        L   +    L+V+H      LV+T +GL     R L   NC +S +D+  S
Sbjct:    3 QVYLVRHGETQWNAERRIQGQSD-SPLTAKGEQQAMQVGERARSLGITHIISSDLGRTKRTAEIIAQACGCDITFDFRLRELDM----GVLEKRQIDSLTEEEEGWRRQLVNGTQDGRIPGGESMQELSDRVHAALASCLELPQGSRPLLVSHGIALGCLVSTILGLPAWAERRLRLRNCSISRIDYQES 187
[Close]
BLAST of FC899856 vs. ExPASy Swiss-Prot
Match: GPMB_SALCH (Probable phosphoglycerate mutase gpmB OS=Salmonella choleraesuis GN=gpmB PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 8.651e-15
Identity = 68/190 (35.79%), Postives = 90/190 (47.37%), Query Frame = 2 
Query:  242 RVVLVRHGQSTWNAEGRIQGSSDFSVLTKKGEAQAETSRQMLFDESFDVCFSSPLIRSKRTAEIIWGNRKEEILTDYDLREIDLYSFQGLLKHEGKAKFGPAYHQWQVNPANFSIDGHYP----VRELWARARNCWTKIL-AHESKSVLVVAHNAVNQALVATAIGLGTGFFRILLQSNCGVSVLDFTPS 796
            +V LVRHG++ WNAE RIQG SD S LT KGE QA    +     S     SS L R+KRTAEII      +I  D  LRE+D+    G+L+             W+    N + DG  P    ++EL  R        L   +    L+V+H      LV+T +GL     R L   NC +S +D+  S
Sbjct:    3 QVYLVRHGETQWNAERRIQGQSD-SPLTAKGEQQAMQVGERARSLSITHIISSDLGRTKRTAEIIAQACGCDITFDSRLRELDM----GVLEKRQIDSLTEEEEGWRRQLVNGTQDGRIPGGESMQELSDRVHAALASCLELPQGSRPLLVSHGIALGCLVSTILGLPAWAERRLRLRNCSISRIDYQES 187
[Close]
BLAST of FC899856 vs. ExPASy Swiss-Prot
Match: GPMB_CITK8 (Probable phosphoglycerate mutase gpmB OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=gpmB PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.476e-14
Identity = 66/191 (34.55%), Postives = 91/191 (47.64%), Query Frame = 2 
Query:  242 RVVLVRHGQSTWNAEGRIQGSSDFSVLTKKGEAQAETSRQMLFDESFDVCFSSPLIRSKRTAEIIWGNRKEEILTDYDLREIDLYSFQGLLKHEGKAKFGPAYHQWQVNPANFSIDGHYP----VRELWARARNCWTKIL-AHESKSVLVVAHNAVNQALVATAIGLGTGFFRILLQSNCGVSVLDFTPSV 799
            +V LVRHG++ WNAE RIQG SD S LT KGE QA    +           SS L R++RTAEII      +I  D  LRE+D+    G+L+             W+    N ++DG  P    ++EL  R        L   +    L+V+H      LV+T +GL     R L   NC +S +D+  S+
Sbjct:    3 QVYLVRHGETQWNAERRIQGQSD-SPLTAKGEQQAMQVGERARTLGITHIVSSDLGRTRRTAEIIAQACGCDITFDARLRELDM----GVLEKRHIDTLTEEEENWRRQLVNGTVDGRIPDGESMQELSDRVNAALASCLELPQGSRPLLVSHGIALGCLVSTILGLPAWAERRLRLRNCSISRVDYQESL 188
[Close]
BLAST of FC899856 vs. ExPASy Swiss-Prot
Match: GPMB_SALTY (Probable phosphoglycerate mutase gpmB OS=Salmonella typhimurium GN=gpmB PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.517e-14
Identity = 67/190 (35.26%), Postives = 89/190 (46.84%), Query Frame = 2 
Query:  242 RVVLVRHGQSTWNAEGRIQGSSDFSVLTKKGEAQAETSRQMLFDESFDVCFSSPLIRSKRTAEIIWGNRKEEILTDYDLREIDLYSFQGLLKHEGKAKFGPAYHQWQVNPANFSIDGHYP----VRELWARARNCWTKIL-AHESKSVLVVAHNAVNQALVATAIGLGTGFFRILLQSNCGVSVLDFTPS 796
            +V LVRHG++ WNAE RIQG SD S LT KGE QA    +           SS L R+KRTAEII      +I  D  LRE+D+    G+L+             W+    N + DG  P    ++EL  R        L   +    L+V+H      LV+T +GL     R L   NC +S +D+  S
Sbjct:    3 QVYLVRHGETQWNAERRIQGQSD-SPLTAKGEQQAMQVGERARSLGITHIISSDLGRTKRTAEIIAQACGCDITFDSRLRELDM----GVLEKRQIDSLTEEEEGWRRQLVNGTQDGRIPGGESMQELSDRVHAALASCLELPQGSRPLLVSHGIALGCLVSTILGLPAWAERRLRLRNCSISRIDYQES 187
[Close]
BLAST of FC899856 vs. ExPASy Swiss-Prot
Match: GPMB_SALSV (Probable phosphoglycerate mutase gpmB OS=Salmonella schwarzengrund (strain CVM19633) GN=gpmB PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.517e-14
Identity = 67/190 (35.26%), Postives = 89/190 (46.84%), Query Frame = 2 
Query:  242 RVVLVRHGQSTWNAEGRIQGSSDFSVLTKKGEAQAETSRQMLFDESFDVCFSSPLIRSKRTAEIIWGNRKEEILTDYDLREIDLYSFQGLLKHEGKAKFGPAYHQWQVNPANFSIDGHYP----VRELWARARNCWTKIL-AHESKSVLVVAHNAVNQALVATAIGLGTGFFRILLQSNCGVSVLDFTPS 796
            +V LVRHG++ WNAE RIQG SD S LT KGE QA    +           SS L R+KRTAEII      +I  D  LRE+D+    G+L+             W+    N + DG  P    ++EL  R        L   +    L+V+H      LV+T +GL     R L   NC +S +D+  S
Sbjct:    3 QVYLVRHGETQWNAERRIQGQSD-SPLTAKGEQQAMQVGERARSLGITHIISSDLGRTKRTAEIIAQACGCDITFDSRLRELDM----GVLEKRQIDSLTEEEEGWRRQLVNGTQDGRIPGGESMQELSDRVHAALASCLELPQGSRPLLVSHGIALGCLVSTILGLPAWAERRLRLRNCSISRIDYQES 187
[Close]
BLAST of FC899856 vs. ExPASy Swiss-Prot
Match: GPMB_SALPB (Probable phosphoglycerate mutase gpmB OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=gpmB PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.517e-14
Identity = 67/190 (35.26%), Postives = 89/190 (46.84%), Query Frame = 2 
Query:  242 RVVLVRHGQSTWNAEGRIQGSSDFSVLTKKGEAQAETSRQMLFDESFDVCFSSPLIRSKRTAEIIWGNRKEEILTDYDLREIDLYSFQGLLKHEGKAKFGPAYHQWQVNPANFSIDGHYP----VRELWARARNCWTKIL-AHESKSVLVVAHNAVNQALVATAIGLGTGFFRILLQSNCGVSVLDFTPS 796
            +V LVRHG++ WNAE RIQG SD S LT KGE QA    +           SS L R+KRTAEII      +I  D  LRE+D+    G+L+             W+    N + DG  P    ++EL  R        L   +    L+V+H      LV+T +GL     R L   NC +S +D+  S
Sbjct:    3 QVYLVRHGETQWNAERRIQGQSD-SPLTAKGEQQAMQVGERARSLGITHIISSDLGRTKRTAEIIAQACGCDITFDSRLRELDM----GVLEKRQIDSLTEEEEGWRRQLVNGTQDGRIPGGESMQELSDRVHAALASCLELPQGSRPLLVSHGIALGCLVSTILGLPAWAERRLRLRNCSISRIDYQES 187
[Close]
BLAST of FC899856 vs. ExPASy Swiss-Prot
Match: GPMB_SALPA (Probable phosphoglycerate mutase gpmB OS=Salmonella paratyphi A GN=gpmB PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.517e-14
Identity = 67/190 (35.26%), Postives = 89/190 (46.84%), Query Frame = 2 
Query:  242 RVVLVRHGQSTWNAEGRIQGSSDFSVLTKKGEAQAETSRQMLFDESFDVCFSSPLIRSKRTAEIIWGNRKEEILTDYDLREIDLYSFQGLLKHEGKAKFGPAYHQWQVNPANFSIDGHYP----VRELWARARNCWTKIL-AHESKSVLVVAHNAVNQALVATAIGLGTGFFRILLQSNCGVSVLDFTPS 796
            +V LVRHG++ WNAE RIQG SD S LT KGE QA    +           SS L R+KRTAEII      +I  D  LRE+D+    G+L+             W+    N + DG  P    ++EL  R        L   +    L+V+H      LV+T +GL     R L   NC +S +D+  S
Sbjct:    3 QVYLVRHGETQWNAERRIQGQSD-SPLTAKGEQQAMQVGERARSLGITHIISSDLGRTKRTAEIIAQACGCDITFDSRLRELDM----GVLEKRQIDSLTEEEEGWRRQLVNGTQDGRIPGGESMQELSDRVHAALASCLELPQGSRPLLVSHGIALGCLVSTILGLPAWAERRLRLRNCSISRIDYQES 187
[Close]
BLAST of FC899856 vs. ExPASy Swiss-Prot
Match: GPMB_SALNS (Probable phosphoglycerate mutase gpmB OS=Salmonella newport (strain SL254) GN=gpmB PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.517e-14
Identity = 67/190 (35.26%), Postives = 89/190 (46.84%), Query Frame = 2 
Query:  242 RVVLVRHGQSTWNAEGRIQGSSDFSVLTKKGEAQAETSRQMLFDESFDVCFSSPLIRSKRTAEIIWGNRKEEILTDYDLREIDLYSFQGLLKHEGKAKFGPAYHQWQVNPANFSIDGHYP----VRELWARARNCWTKIL-AHESKSVLVVAHNAVNQALVATAIGLGTGFFRILLQSNCGVSVLDFTPS 796
            +V LVRHG++ WNAE RIQG SD S LT KGE QA    +           SS L R+KRTAEII      +I  D  LRE+D+    G+L+             W+    N + DG  P    ++EL  R        L   +    L+V+H      LV+T +GL     R L   NC +S +D+  S
Sbjct:    3 QVYLVRHGETQWNAERRIQGQSD-SPLTAKGEQQAMQVGERARSLGITHIISSDLGRTKRTAEIIAQACGCDITFDSRLRELDM----GVLEKRQIDSLTEEEEGWRRQLVNGTQDGRIPGGESMQELSDRVHAALASCLELPQGSRPLLVSHGIALGCLVSTILGLPAWAERRLRLRNCSISRIDYQES 187
[Close]
BLAST of FC899856 vs. ExPASy Swiss-Prot
Match: GPMB_SALHS (Probable phosphoglycerate mutase gpmB OS=Salmonella heidelberg (strain SL476) GN=gpmB PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.517e-14
Identity = 67/190 (35.26%), Postives = 89/190 (46.84%), Query Frame = 2 
Query:  242 RVVLVRHGQSTWNAEGRIQGSSDFSVLTKKGEAQAETSRQMLFDESFDVCFSSPLIRSKRTAEIIWGNRKEEILTDYDLREIDLYSFQGLLKHEGKAKFGPAYHQWQVNPANFSIDGHYP----VRELWARARNCWTKIL-AHESKSVLVVAHNAVNQALVATAIGLGTGFFRILLQSNCGVSVLDFTPS 796
            +V LVRHG++ WNAE RIQG SD S LT KGE QA    +           SS L R+KRTAEII      +I  D  LRE+D+    G+L+             W+    N + DG  P    ++EL  R        L   +    L+V+H      LV+T +GL     R L   NC +S +D+  S
Sbjct:    3 QVYLVRHGETQWNAERRIQGQSD-SPLTAKGEQQAMQVGERARSLGITHIISSDLGRTKRTAEIIAQACGCDITFDSRLRELDM----GVLEKRQIDSLTEEEEGWRRQLVNGTQDGRIPGGESMQELSDRVHAALASCLELPQGSRPLLVSHGIALGCLVSTILGLPAWAERRLRLRNCSISRIDYQES 187
The following BLAST results are available for this feature:
BLAST of FC899856 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
GPMB_SERP53.883e-1533.16Probable phosphoglycerate mutase gpmB OS=Serratia ... [more]
GPMB_SALTI6.624e-1535.26Probable phosphoglycerate mutase gpmB OS=Salmonell... [more]
GPMB_SALCH8.651e-1535.79Probable phosphoglycerate mutase gpmB OS=Salmonell... [more]
GPMB_CITK81.476e-1434.55Probable phosphoglycerate mutase gpmB OS=Citrobact... [more]
GPMB_SALTY2.517e-1435.26Probable phosphoglycerate mutase gpmB OS=Salmonell... [more]
GPMB_SALSV2.517e-1435.26Probable phosphoglycerate mutase gpmB OS=Salmonell... [more]
GPMB_SALPB2.517e-1435.26Probable phosphoglycerate mutase gpmB OS=Salmonell... [more]
GPMB_SALPA2.517e-1435.26Probable phosphoglycerate mutase gpmB OS=Salmonell... [more]
GPMB_SALNS2.517e-1435.26Probable phosphoglycerate mutase gpmB OS=Salmonell... [more]
GPMB_SALHS2.517e-1435.26Probable phosphoglycerate mutase gpmB OS=Salmonell... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA97AH05RM1 IVIA1 Citrus clementina cDNA clone IC0AAA97AH05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC899856 ID=FC899856; Name=FC899856; organism=Citrus clementina; type=EST; length=909bp
AAAAAAAAAAATCAAAATGTTGTCATTTCCCGTTGCGCCATCTCTGCTGA
ACCACAGCCATCTTCTTCATCACAGGCCCTACTTCAGCTTCACCGTCCGA
TCATCATCATCATCATCGACCGTCCAAGAAGTCGAGGAGTCGTCGTCATC
ATCAAAGTCGTCGAAATCAACGGCTGATGCCGGAGAGTTGAGCTCGGAAC
TCTACGTTTCGCCGCCGTTCCCGCAGATTCGGGCGGCGAAGAGAGTGGTG
TTGGTGAGGCACGGGCAGAGCACGTGGAATGCGGAGGGAAGAATCCAGGG
GAGCTCTGATTTCTCCGTTTTGACCAAGAAAGGCGAGGCTCAGGCTGAGA
CCTCCAGGCAGATGCTCTTCGATGAGTCCTTTGATGTTTGCTTCTCTAGC
CCCTTGATTCGATCAAAGAGAACGGCAGAAATCATATGGGGCAATCGAAA
GGAGGAGATTTTGACCGACTATGACCTGCGAGAAATTGACCTTTATTCTT
TCCAGGGTCTTCTGAAGCACGAGGGAAAAGCAAAATTTGGTCCAGCTTAT
CATCAATGGCAGGTAAATCCCGCAAATTTCAGCATTGATGGTCACTATCC
AGTTAGAGAGTTGTGGGCAAGAGCCAGAAACTGCTGGACTAAAATCCTAG
CCCATGAAAGCAAGTCGGTTCTTGTGGTTGCTCATAATGCTGTTAATCAG
GCTCTTGTTGCCACGGCGATCGGACTAGGAACTGGGTTTTTCAGGATCTT
ACTTCAGAGCAATTGTGGTGTGAGTGTGTTGGATTTCACTCCATCAGTTG
ATGGAGGGTCCCCACACATTTGTCTCAATCGTCTAAATCAGACACCAAAT
TCACCTGTTGCTGCTGGAAGTTCTGGGGGGCAGAAAAGCCAGTAAACGGA
TTATACTTG
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