FC899915

Overview
NameFC899915
Unique NameFC899915
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length789
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC899915 vs. ExPASy Swiss-Prot
Match: IMA1A_ORYSJ (Importin subunit alpha-1a OS=Oryza sativa subsp. japonica GN=Os01g0253300 PE=1 SV=2)

HSP 1 Score: 298.516 bits (763), Expect = 2.755e-80
Identity = 151/183 (82.51%), Postives = 169/183 (92.35%), Query Frame = 1
Query:  244 MSLRPNARTEVRRSKYKVAVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQPLTNSAALD-NKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALG 789
            MSLRP+ R EVRR++YKVAVDAEEGRRRREDNMVEIRK++REESLLKKRREGLQA  P+  SAA   +KKLESLPAM+ GV+SDD N+QL+ATTQFRKLLSIERSPPI EVIQSGVVPRF++FL+R+DFPQLQFEAAWALTNIASGTSENT+VVIDHGAVPIFV+LL S +DDVREQAVWALG
Sbjct:    1 MSLRPSERVEVRRNRYKVAVDAEEGRRRREDNMVEIRKSRREESLLKKRREGLQAQAPVPASAATGVDKKLESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALG 183          
BLAST of FC899915 vs. ExPASy Swiss-Prot
Match: IMA_SOLLC (Importin subunit alpha OS=Solanum lycopersicum PE=2 SV=2)

HSP 1 Score: 298.13 bits (762), Expect = 3.598e-80
Identity = 148/184 (80.43%), Postives = 170/184 (92.39%), Query Frame = 1
Query:  244 MSLRPNARTEVRRSKYKVAVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQPLTNSAALDN--KKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALG 789
            MSLRPN+RTE RRS+YKVAVDAEEGRRRREDNMVEIRKNKREE+LLKKRREGL   Q   ++AA+ +  KKLE+LP ++AGVWSDD ++QL+ TTQFRKLLSIER+PPI EVIQSGVVPRF+EFL+RDD+PQLQFEAAWALTNIASGTSENT+VVID+G+VPIF+RLLSSP+DDVREQAVWALG
Sbjct:    1 MSLRPNSRTEARRSRYKVAVDAEEGRRRREDNMVEIRKNKREENLLKKRREGLLQAQQFPSTAAVSHLDKKLETLPELIAGVWSDDSSLQLECTTQFRKLLSIERNPPIEEVIQSGVVPRFVEFLARDDYPQLQFEAAWALTNIASGTSENTKVVIDYGSVPIFIRLLSSPSDDVREQAVWALG 184          
BLAST of FC899915 vs. ExPASy Swiss-Prot
Match: IMA1_ARATH (Importin subunit alpha-1 OS=Arabidopsis thaliana GN=KAP1 PE=2 SV=2)

HSP 1 Score: 283.878 bits (725), Expect = 7.022e-76
Identity = 143/183 (78.14%), Postives = 167/183 (91.26%), Query Frame = 1
Query:  244 MSLRPNARTEVRRSKYKVAVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQPLTN-SAALDNKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALG 789
            MSLRPNA+TEVRR++YKVAVDAEEGRRRREDNMVEIRK+KREESL+KKRREG+QA Q   + SAA  +KKL+SL  MVAGVWSDD  +QL++TTQFRKLLSIERSPPI EVI +GVVPRF+EFL ++D+P +QFEAAWALTNIASGTS++T+VVIDH AVPIFV+LL+SP+DDVREQAVWALG
Sbjct:    1 MSLRPNAKTEVRRNRYKVAVDAEEGRRRREDNMVEIRKSKREESLMKKRREGMQALQGFPSASAASVDKKLDSLKDMVAGVWSDDPALQLESTTQFRKLLSIERSPPIEEVISAGVVPRFVEFLKKEDYPAIQFEAAWALTNIASGTSDHTKVVIDHNAVPIFVQLLASPSDDVREQAVWALG 183          
BLAST of FC899915 vs. ExPASy Swiss-Prot
Match: IMA1B_ORYSJ (Importin subunit alpha-1b OS=Oryza sativa subsp. japonica GN=Os05g0155500 PE=1 SV=2)

HSP 1 Score: 268.855 bits (686), Expect = 2.338e-71
Identity = 139/189 (73.54%), Postives = 160/189 (84.66%), Query Frame = 1
Query:  244 MSLRPNARTEVRRSKYKVAVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAH-------QPLTNSAALDNKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALG 789
            MSLRP+ R EVRRS+YKVAVDA+EGRRRREDNMVEIRK++REESLLKKRR+GL A         PL   ++   +KLE LPAMV  V SDD  +QL+ATTQFRKLLSIERSPPI EVI +GVVPRFI FL R+D+PQLQFEAAWALTNIASGTS+NT+VV++ GAVPIFV+LLSSP++DVREQAVWALG
Sbjct:    1 MSLRPSERAEVRRSRYKVAVDADEGRRRREDNMVEIRKSRREESLLKKRRDGLPAAAAAAAAASPLLAHSSALQQKLEGLPAMVQAVQSDDSAVQLEATTQFRKLLSIERSPPIEEVINTGVVPRFIAFLQREDYPQLQFEAAWALTNIASGTSDNTKVVVESGAVPIFVKLLSSPSEDVREQAVWALG 189          
BLAST of FC899915 vs. ExPASy Swiss-Prot
Match: IMA2_ARATH (Importin subunit alpha-2 OS=Arabidopsis thaliana GN=KAP2 PE=1 SV=2)

HSP 1 Score: 260.381 bits (664), Expect = 8.314e-69
Identity = 132/186 (70.97%), Postives = 156/186 (83.87%), Query Frame = 1
Query:  244 MSLRPNARTEVRRSKYKVAVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQPLTNSAALD----NKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALG 789
            MSLRP+A+TEVRR++YKVAVDAEEGRRRREDN+VEIRKNKREE+L KKR     A    T     D    N+  ++LPAMVAG+WS+D N QL+AT   RKLLSIE++PPINEV+QSGVVPR ++FLSRDDFP+LQFEAAWALTNIASGTSENT V+I+ GAVPIF++LLSS ++DVREQAVWALG
Sbjct:    1 MSLRPSAKTEVRRNRYKVAVDAEEGRRRREDNLVEIRKNKREENLQKKRFTSSMAFGSATGQTEQDLSSANQLKDNLPAMVAGIWSEDSNSQLEATNLLRKLLSIEQNPPINEVVQSGVVPRVVKFLSRDDFPKLQFEAAWALTNIASGTSENTNVIIESGAVPIFIQLLSSASEDVREQAVWALG 186          
BLAST of FC899915 vs. ExPASy Swiss-Prot
Match: IMAB_DICDI (Importin subunit alpha-B OS=Dictyostelium discoideum GN=DDB_G0272318 PE=3 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 3.391e-54
Identity = 105/176 (59.66%), Postives = 141/176 (80.11%), Query Frame = 1
Query:  262 ARTEVRRSKYKVAVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQPLTNSAALDNKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALG 789
            ++ E R+S+YK ++D++E RR+RE+  + IRKNKREESLLKKR + +    P+   + + N++LE LP++VA + S++ ++ L +TT FRKLLSIE+SPPI EVI++G+VPR ++FL   DFPQLQFEAAWALTNIASGT E TRVVI++GA+ +FV LLSSP DDVREQAVWALG
Sbjct:    4 SKQETRKSQYKKSIDSDESRRKREEASLSIRKNKREESLLKKRTQAVPGSTPVKVDSLI-NQRLEQLPSLVAEINSENPDLILKSTTAFRKLLSIEKSPPIEEVIKTGIVPRLVKFLYMQDFPQLQFEAAWALTNIASGTPEQTRVVIENGAIQVFVLLLSSPHDDVREQAVWALG 178          
BLAST of FC899915 vs. ExPASy Swiss-Prot
Match: IMA2_SCHPO (Importin subunit alpha-2 OS=Schizosaccharomyces pombe GN=imp1 PE=1 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 4.025e-39
Identity = 91/180 (50.56%), Postives = 116/180 (64.44%), Query Frame = 1
Query:  277 RRSKYKV--AVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQPLTNSAALDNKKLE-------SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALG 789
            RRS++K      A+E RR+RE+  +EIRK KREESL K+R         +      D  +++         P + A V SDD  +QL A T+FRK LS E  PPI++VI  GVV RF++FL  +    LQFEAAWALTNIASGT++ TR+V+D GAVP F++LLSSP  DVREQ VWALG
Sbjct:    9 RRSRFKSKGVFKADELRRQREEQQIEIRKQKREESLNKRRNLNAVLQNDIDVEEEADQSQVQMEQQMKDEFPKLTADVMSDDIELQLGAVTKFRKYLSKETHPPIDQVIACGVVDRFVQFLESEHH-LLQFEAAWALTNIASGTTDQTRIVVDSGAVPRFIQLLSSPEKDVREQVVWALG 187          
BLAST of FC899915 vs. ExPASy Swiss-Prot
Match: IMA1_SCHPO (Importin subunit alpha-1 OS=Schizosaccharomyces pombe GN=cut15 PE=1 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 5.256e-39
Identity = 94/181 (51.93%), Postives = 120/181 (66.30%), Query Frame = 1
Query:  271 EVRRSKYKV--AVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQPLTNSAALDNKK-----LE-SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALG 789
            E RR  YK      A+E RRRRE   +EIRK KREE+L  KRR  +   +P   +  L+  K     LE  LP ++  ++SDD   Q+ AT +FRK LS E +PPI +VI +GVVPRF+EFLS ++   L+FEA+WALTN+ASG+S  T VV++  AVP+FV LLSS   DVREQAVWALG
Sbjct:   10 EHRRQNYKGKGTFQADELRRRRETQQIEIRKQKREENL-NKRRNLVDVQEPAEETIPLEQDKENDLELELQLPDLLKALYSDDIEAQIQATAKFRKALSKETNPPIQKVIDAGVVPRFVEFLSHEN-NLLKFEASWALTNVASGSSNQTHVVVEANAVPVFVSLLSSSEQDVREQAVWALG 188          
BLAST of FC899915 vs. ExPASy Swiss-Prot
Match: IMA7_MOUSE (Importin subunit alpha-7 OS=Mus musculus GN=Kpna6 PE=1 SV=2)

HSP 1 Score: 159.073 bits (401), Expect = 2.609e-38
Identity = 92/180 (51.11%), Postives = 122/180 (67.78%), Query Frame = 1
Query:  277 RRSKYKV-AVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQPLTNSAALDNKKLESLPA-------MVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQS-GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALG 789
            R   YK  A++ EE RRRRE+  +++RK KRE+ L K+R   L   +     + L +  + S          MV  ++SDD ++QL  T +FRKLLS E SPPI+EVI + GVV RF+EFL R++   LQFEAAWALTNIASGTS+ T++VI+ GAVPIF+ LL+S  +DV+EQAVWALG
Sbjct:   13 RMKSYKNNALNPEEMRRRREEEGIQLRKQKREQQLFKRRNVELINEEAAMFDSLLMDSYVSSTTGESVITREMVEMLFSDDSDLQLATTQKFRKLLSKEPSPPIDEVINTPGVVDRFVEFLKRNENCTLQFEAAWALTNIASGTSQQTKIVIEAGAVPIFIELLNSDFEDVQEQAVWALG 192          
BLAST of FC899915 vs. ExPASy Swiss-Prot
Match: IMA7_BOVIN (Importin subunit alpha-7 OS=Bos taurus GN=KPNA6 PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 3.407e-38
Identity = 92/180 (51.11%), Postives = 122/180 (67.78%), Query Frame = 1
Query:  277 RRSKYKV-AVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQPLTNSAALDNKKLESLPA-------MVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQS-GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALG 789
            R   YK  A++ EE RRRRE+  +++RK KRE+ L K+R   L   +     + L +  + S          MV  ++SDD ++QL  T +FRKLLS E SPPI+EVI + GVV RF+EFL R++   LQFEAAWALTNIASGTS+ T++VI+ GAVPIF+ LL+S  +DV+EQAVWALG
Sbjct:   13 RMKSYKNNALNPEEMRRRREEEGIQLRKQKREQQLFKRRNVELINEEAAMFDSLLMDSYVSSTTGESVITREMVEMLFSDDPDLQLATTQKFRKLLSKEPSPPIDEVINTPGVVDRFVEFLKRNENCTLQFEAAWALTNIASGTSQQTKIVIEAGAVPIFIELLNSDFEDVQEQAVWALG 192          
The following BLAST results are available for this feature:
BLAST of FC899915 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
IMA1A_ORYSJ2.755e-8082.51Importin subunit alpha-1a OS=Oryza sativa subsp. j... [more]
IMA_SOLLC3.598e-8080.43Importin subunit alpha OS=Solanum lycopersicum PE=... [more]
IMA1_ARATH7.022e-7678.14Importin subunit alpha-1 OS=Arabidopsis thaliana G... [more]
IMA1B_ORYSJ2.338e-7173.54Importin subunit alpha-1b OS=Oryza sativa subsp. j... [more]
IMA2_ARATH8.314e-6970.97Importin subunit alpha-2 OS=Arabidopsis thaliana G... [more]
IMAB_DICDI3.391e-5459.66Importin subunit alpha-B OS=Dictyostelium discoide... [more]
IMA2_SCHPO4.025e-3950.56Importin subunit alpha-2 OS=Schizosaccharomyces po... [more]
IMA1_SCHPO5.256e-3951.93Importin subunit alpha-1 OS=Schizosaccharomyces po... [more]
IMA7_MOUSE2.609e-3851.11Importin subunit alpha-7 OS=Mus musculus GN=Kpna6 ... [more]
IMA7_BOVIN3.407e-3851.11Importin subunit alpha-7 OS=Bos taurus GN=KPNA6 PE... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA92AG09RM1 IVIA1 Citrus clementina cDNA clone IC0AAA92AG09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC899915 ID=FC899915; Name=FC899915; organism=Citrus clementina; type=EST; length=789bp
CAGATTATCAATTTCATTCGAATAAAAATCCAAAATCCGCCTCATCGTTA
TCTGTCGTCTCGTCTCTCGCACTCTTTTCCTCAGTACATCGTTGCTGCTC
TCTTTCCTTTCCCTCTTTTCTTTCTTGCAAAACCAACCGATCAGATTCAG
CGGCTATCTCAAAGCATTTTAGTGTTTCCGATTACTAGATTCGATTAGAA
TTTCTAAACACACACGCACAAAAAGAAAGAAAGAAAAAACGACATGTCGC
TTAGACCGAACGCAAGAACCGAGGTTCGCAGGAGCAAATACAAGGTAGCC
GTAGATGCGGAAGAGGGACGGAGGAGGAGAGAAGACAATATGGTGGAGAT
CCGAAAGAACAAGAGAGAAGAAAGCTTGCTCAAGAAGCGACGCGAGGGAC
TTCAAGCTCACCAACCACTTACCAACTCCGCCGCTCTCGATAACAAGAAG
TTAGAAAGTCTTCCAGCTATGGTTGCAGGCGTTTGGTCTGATGATAGAAA
CATACAGCTCGACGCAACCACTCAGTTCCGGAAGTTACTCTCAATAGAAC
GCAGTCCTCCAATTAATGAAGTTATACAATCCGGTGTTGTTCCTCGCTTT
ATAGAGTTTCTTTCAAGGGATGACTTTCCACAGCTTCAGTTTGAGGCTGC
CTGGGCTCTTACAAATATTGCTTCTGGAACATCAGAAAACACCAGAGTGG
TGATTGATCATGGGGCTGTCCCCATATTTGTCAGACTTCTAAGTTCTCCC
ACCGATGATGTTCGTGAGCAGGCTGTTTGGGCATTGGGA
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