FC899918

Overview
NameFC899918
Unique NameFC899918
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length894
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC899918_ssr1 microsatellite FC899918_ssr1:1..20. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of FC899918 vs. ExPASy Swiss-Prot
Match: MTG1_MOUSE (Mitochondrial GTPase 1 OS=Mus musculus GN=Mtg1 PE=2 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 5.087e-30
Identity = 58/168 (34.52%), Postives = 79/168 (47.02%), Query Frame = 2
Query:  152 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLANPNILNKWVRH----------FDSCKQDCIAINAHSRSSXXXXXXXXXXXXXXXISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDI 625
            WFPGHMA   + ++  LK  D VIEV D+RIP S  +P  Q  L  K  ++ LNK DLA+     K V+           F +C +D      + +                  +  P   +MVVGVPNVGKS+LINS+ +  L         K A VG  PG+T+ +
Sbjct:   29 WFPGHMAKGLKKMQSSLKSVDCVIEVHDARIPFSGRNPLFQELLGLKPHLLVLNKMDLADLTEQQKIVQRLEEKGLSNVLFTNCVKD-----ENIKQIVPKVMELIRCSYRYHRAETPEYCIMVVGVPNVGKSSLINSLRRQHL------RTGKAARVGGEPGITRAV 185          

HSP 2 Score: 70.0922 bits (170), Expect = 5.087e-30
Identity = 32/57 (56.14%), Postives = 41/57 (71.93%), Query Frame = 1
Query:  667 IAHRPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRG 837
            +  RP +++LDTPGVL P I  +ETGLKLAL G++ D +VGEE +A YLL  LN  G
Sbjct:  191 VCERPLVFLLDTPGVLAPRIESVETGLKLALCGTVLDHLVGEETMADYLLYTLNRHG 247          
BLAST of FC899918 vs. ExPASy Swiss-Prot
Match: MTG1_HUMAN (Mitochondrial GTPase 1 OS=Homo sapiens GN=MTG1 PE=2 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 8.621e-30
Identity = 58/170 (34.12%), Postives = 81/170 (47.65%), Query Frame = 2
Query:  152 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLANPNILNKWVRH----------FDSCKQDCIAINAHSRSSXXXXXXXXXXXXXXXISREPTL--LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDI 625
            WFPGHMA   + ++  LK+ D +IEV D+RIPLS  +P  Q  L  K  ++ LNK DLA+     K ++H          F +C +D                            R+  L   +MV+GVPNVGKS+LINS+ +  L       K K   VG  PG+T+ +
Sbjct:   30 WFPGHMAKGLKKMQSSLKLVDCIIEVHDARIPLSGRNPLFQETLGLKPHLLVLNKMDLADLTEQQKIMQHLEGEGLKNVIFTNCVKD-------ENVKQIIPMVTELIGRSHRYHRKENLEYCIMVIGVPNVGKSSLINSLRRQHL------RKGKATRVGGEPGITRAV 186          

HSP 2 Score: 67.781 bits (164), Expect = 8.621e-30
Identity = 31/54 (57.41%), Postives = 41/54 (75.93%), Query Frame = 1
Query:  667 IAHRPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLN 828
            ++ RP +++LDTPGVL P I  +ETGLKLAL G++ D +VGEE +A YLL  LN
Sbjct:  192 VSERPLMFLLDTPGVLAPRIESVETGLKLALCGTVLDHLVGEETMADYLLYTLN 245          
BLAST of FC899918 vs. ExPASy Swiss-Prot
Match: MTG1_BOVIN (Mitochondrial GTPase 1 OS=Bos taurus GN=MTG1 PE=2 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 8.621e-30
Identity = 54/168 (32.14%), Postives = 80/168 (47.62%), Query Frame = 2
Query:  152 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLANPNILNKWVRH----------FDSCKQDCIAINAHSRSSXXXXXXXXXXXXXXXISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDI 625
            WFPGHMA   + ++  L++ D +IEV D++IPLS  +P  Q  L  K  ++ LNK DLA+     K ++H          F +C +D      + +                         +MV+GVPNVGKS+LINS+ +  L       K K   VG  PG+T+ +
Sbjct:   30 WFPGHMAKGLKKMQSSLRLVDCIIEVHDAQIPLSGRNPLFQETLGLKPHLLVLNKMDLADLKEQQKIIQHLEREGIKHVVFTNCVKD-----ENVKQVIPTVTELVGSSYRYHRGEHVEYCIMVIGVPNVGKSSLINSLRRQHL------RKGKATRVGGEPGITRAV 186          

HSP 2 Score: 69.3218 bits (168), Expect = 8.621e-30
Identity = 31/54 (57.41%), Postives = 41/54 (75.93%), Query Frame = 1
Query:  667 IAHRPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLN 828
            +  RP +++LDTPGVL P IP +ETGLKLAL G++ D +VGEE +A +LL  LN
Sbjct:  192 VCERPLMFLLDTPGVLAPRIPSVETGLKLALCGTVLDHLVGEETLADFLLYTLN 245          
BLAST of FC899918 vs. ExPASy Swiss-Prot
Match: RBGA_BACSU (Ribosome biogenesis GTPase A OS=Bacillus subtilis GN=rbgA PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 5.990e-24
Identity = 52/164 (31.71%), Postives = 80/164 (48.78%), Query Frame = 2
Query:  146 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLANPNILNKWVRHFDSCKQDCIAINAHSRSSXXXXXXXXXXXXXXXISR-------EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVT 616
            I WFPGHMA A R +  +LK+ D+V E+ D+RIP+SS +P ++  L  K R++ LNK D A+  +  +W  HF++     ++IN+ +                    R          +  +++G+PNVGKS LIN +            K   A  G  PG+T
Sbjct:    3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDILKNKPRIMLLNKADKADAAVTQQWKEHFENQGIRSLSINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGIPNVGKSTLINRL-----------AKKNIAKTGDRPGIT 155          

HSP 2 Score: 43.1282 bits (100), Expect = 5.990e-24
Identity = 20/45 (44.44%), Postives = 31/45 (68.89%), Query Frame = 1
Query:  691 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 825
            +LDTPG+L P   D   GL+LA++G+IKDS++  + +A + L  L
Sbjct:  169 LLDTPGILWPKFEDELVGLRLAVTGAIKDSIINLQDVAVFGLRFL 213          
BLAST of FC899918 vs. ExPASy Swiss-Prot
Match: MTG1_SCHPO (Mitochondrial GTPase 1 OS=Schizosaccharomyces pombe GN=mtg1 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.527e-20
Identity = 51/179 (28.49%), Postives = 84/179 (46.93%), Query Frame = 2
Query:  152 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLANP-------------NILNK------WVRHFDSCKQDCIAINAHSRSSXXXXXXXXXXXXXXX-ISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIA 628
            W+PGHM    + +K+    +D+ +EVRD+RIPL+S +  ++  L+ K R+I  NK DLA+              N+  +      W +   + ++        S++                  S    + V  VG+PN GKS+++NS+  +AL       K+K A VG  PGVT+ I+
Sbjct:   17 WYPGHMNKTLKRLKNLTSSNDIFVEVRDARIPLTSRNYVMEDFLNKKNRIIVYNKCDLADTFHTKAKVSKHRIQNLAQQFQNVECWFKETSTPEKSAFITPYVSKAPYFAKELLRLIRTLVDQASANGRVYVYFVGMPNTGKSSILNSLRNVAL------RKSKSAIVGNYPGVTKRIS 189          

HSP 2 Score: 46.9802 bits (110), Expect = 3.527e-20
Identity = 22/48 (45.83%), Postives = 31/48 (64.58%), Query Frame = 1
Query:  685 IYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLN 828
            +Y+LDTPG++ PSI   E  LKL+L G +K+ +V    +  YLL  LN
Sbjct:  200 VYMLDTPGIMTPSITKPEDMLKLSLVGCVKEGIVHPVTVVDYLLFHLN 247          
The following BLAST results are available for this feature:
BLAST of FC899918 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
MTG1_MOUSE5.087e-3034.52Mitochondrial GTPase 1 OS=Mus musculus GN=Mtg1 PE=... [more]
MTG1_HUMAN8.621e-3034.12Mitochondrial GTPase 1 OS=Homo sapiens GN=MTG1 PE=... [more]
MTG1_BOVIN8.621e-3032.14Mitochondrial GTPase 1 OS=Bos taurus GN=MTG1 PE=2 ... [more]
RBGA_BACSU5.990e-2431.71Ribosome biogenesis GTPase A OS=Bacillus subtilis ... [more]
MTG1_SCHPO3.527e-2028.49Mitochondrial GTPase 1 OS=Schizosaccharomyces pomb... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA13AC12RM1 IVIA1 Citrus clementina cDNA clone IC0AAA13AC12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC899918 ID=FC899918; Name=FC899918; organism=Citrus clementina; type=EST; length=894bp
TGAGTTGAGTTGAGTTGAGTTCATATATTTGCTTCTGTAATCTCTGTTTG
CTAGTGTTAGTGAGAAAGGAGAGATGGGTTTGAAGCGAATAATAAAGAAG
GGTTTGGGATTAGGAGAAATGGGATTCACCAAAGGTGGCGGTAACATCAA
CTGGTTCCCCGGCCACATGGCTGCCGCCACCCGCGCCATCAAACACCGCC
TCAAGATCTCCGACCTCGTCATCGAAGTCCGTGACTCTCGGATTCCTCTG
TCTTCTGCCCACCCTGGCCTGCAGCCACAGCTCTCCGCTAAACGCCGTGT
CATTGCTTTAAACAAGAAAGATTTGGCCAATCCCAACATTTTGAATAAAT
GGGTTCGTCATTTTGATTCGTGCAAGCAAGATTGTATAGCGATAAACGCA
CATAGTAGGAGTTCTGTTCAAAAGCTTCTTGAACTTGTGGAGTTGAAACT
AAAGGAAGTGATTTCAAGGGAGCCCACTCTCCTTGTAATGGTTGTGGGTG
TTCCTAACGTCGGGAAATCGGCTTTAATCAACTCAATTCATCAAATTGCA
TTGTCTCGTTTTCCTGTGCAGGAGAAAACTAAGCGAGCTACGGTTGGACC
ATTGCCTGGTGTCACTCAAGATATTGCAGGATTCAAGATTTGAATTTGAA
CTATTTTCCCTTCCTGATTGCTCATCGGCCTAGCATATATGTTCTAGACA
CGCCAGGTGTATTGGTTCCAAGTATCCCAGATATCGAAACAGGGTTGAAA
CTGGCTCTTTCAGGTTCTATTAAAGATTCAGTTGTGGGTGAGGAGCGCAT
TGCTCAATACTTGCTCGCAGTTCTAAATACCCGAGGCACTCCCCTTCACT
GGAGGCACCTGAATAACAGAACAGAAGTGAGTCAGAGTGAAACT
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