FC900542

Overview
NameFC900542
Unique NameFC900542
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length683
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC900542 vs. ExPASy Swiss-Prot
Match: EF1G_ARTSA (Elongation factor 1-gamma OS=Artemia salina PE=1 SV=3)

HSP 1 Score: 288.886 bits (738), Expect = 1.696e-77
Identity = 128/161 (79.50%), Postives = 144/161 (89.44%), Query Frame = 3
Query:  174 ESKDPFDSMPKGTFNMDDFKRCYSNEDEEKSIPYFWEKFDPENYSIWYGEYKYPEELSKVFMSCNLITGMFQRLDKMRKQAFASVCLFGGDNDSSISGVWVWRGKDLAFPLSPDWTIDYESYDWTKLDPASPDTKKMVKDYFSWSGQDKKGRKFNQGKIFK 656
            +SKDPFD MPKGTFNMDDFKR YSN +E KSIPYFWEKFD ENYSIWY EYKY +EL+KV+MSCNLITGMFQR++KMRKQAFASVC+FG DNDSSISG+WVWRG+DLAF LSPDW IDYESYDW KLDP + +TK +V  YF+W+G DK+GRKFNQGKIFK
Sbjct:  270 KSKDPFDEMPKGTFNMDDFKRFYSNNEETKSIPYFWEKFDKENYSIWYSEYKYQDELAKVYMSCNLITGMFQRIEKMRKQAFASVCVFGEDNDSSISGIWVWRGQDLAFKLSPDWQIDYESYDWKKLDPDAQETKDLVTQYFTWTGTDKQGRKFNQGKIFK 430          
BLAST of FC900542 vs. ExPASy Swiss-Prot
Match: EF1G_DROME (Elongation factor 1-gamma OS=Drosophila melanogaster GN=Ef1gamma PE=1 SV=2)

HSP 1 Score: 284.648 bits (727), Expect = 3.198e-76
Identity = 130/161 (80.75%), Postives = 142/161 (88.20%), Query Frame = 3
Query:  174 ESKDPFDSMPKGTFNMDDFKRCYSNEDEEKSIPYFWEKFDPENYSIWYGEYKYPEELSKVFMSCNLITGMFQRLDKMRKQAFASVCLFGGDNDSSISGVWVWRGKDLAFPLSPDWTIDYESYDWTKLDPASPDTKKMVKDYFSWSGQDKKGRKFNQGKIFK 656
            +SKDPFD++PKGTFN DDFKR YSNEDE KSIPYF++KFD ENYSIW+GEYKY EELSKVFMSCNLITGMFQRLDKMRK AFASVCLFG D +S+ISG+WVWRG+DLAF LSPDW IDYE YDW KLD  S +TKK+V  YFSWSG DK GRKFNQGKIFK
Sbjct:  271 KSKDPFDALPKGTFNFDDFKRVYSNEDEAKSIPYFFDKFDAENYSIWFGEYKYNEELSKVFMSCNLITGMFQRLDKMRKAAFASVCLFGEDGNSTISGIWVWRGQDLAFTLSPDWQIDYEVYDWKKLDAKSEETKKLVTQYFSWSGTDKDGRKFNQGKIFK 431          
BLAST of FC900542 vs. ExPASy Swiss-Prot
Match: EF1G_CAEEL (Probable elongation factor 1-gamma OS=Caenorhabditis elegans GN=F17C11.9 PE=1 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 1.704e-61
Identity = 111/169 (65.68%), Postives = 133/169 (78.70%), Query Frame = 3
Query:  159 DEKPKE--SKDPFDSMPKGTFNMDDFKRCYSNEDEE-KSIPYFWEKFDPENYSIWYGEYKYPEELSKVFMSCNLITGMFQRLDKMRKQAFASVCLFGGDNDSSISGVWVWRGKDLAFPLSPDWTIDYESYDWTKLDPASPDTKKMVKDYFSWSGQDKKGRKFNQGKIFK 656
            D++PKE  SKDPF  MPKGTF +D+FKR YSNED   K+IP+FWE FD +N+SIW  EYKYPE+L+  FMSCNLI GM+QRL+K++K AFAS+ LFG DN+S+ISG+WVW+G  LAF LSPDW +DYESY WTKLD  S  TKK V +Y  W G D  G+KFNQGKIFK
Sbjct:  231 DDEPKEEKSKDPFQDMPKGTFVLDNFKRSYSNEDTATKAIPHFWENFDADNWSIWKCEYKYPEDLTLAFMSCNLINGMYQRLEKLKKNAFASMILFGTDNNSTISGIWVWKGDKLAFELSPDWQVDYESYTWTKLDAKSDATKKEVNEYLMWEG-DFGGKKFNQGKIFK 398          
BLAST of FC900542 vs. ExPASy Swiss-Prot
Match: EF1G_PIG (Elongation factor 1-gamma (Fragment) OS=Sus scrofa GN=EEF1G PE=2 SV=2)

HSP 1 Score: 234.187 bits (596), Expect = 4.957e-61
Identity = 106/163 (65.03%), Postives = 132/163 (80.98%), Query Frame = 3
Query:  174 ESKDPFDSMPKGTFNMDDFKRCYSNEDE-EKSIPYFWEKFDPENYSIWYGEYKYPEELSKVFMSCNLITGMFQRLDKMRKQAFASVCLFGGDNDSSISGVWVWRGKDLAFPLSPDWTIDYESYDWTKLDPASPDTKKMVKDYFSWSG-QDKKGRKFNQGKIFK 656
            ++KDPF  +PK TF +D+FKR YSNED    ++PYFWE FD + +S+WY EY++PEEL++ FMSCNLITGMFQRLDK+RK AFASV LFG +N SSISGVWV+RG++LAFPLSPDW +DYESY W KLDP S +T+ +V++YFSW G     G+ FNQGKIFK
Sbjct:  270 KAKDPFAHLPKSTFVLDEFKRKYSNEDTLSVALPYFWEHFDKDGWSLWYSEYRFPEELTQTFMSCNLITGMFQRLDKLRKNAFASVILFGTNNSSSISGVWVFRGQELAFPLSPDWQVDYESYTWRKLDPGSEETQTLVREYFSWEGAYQHVGKAFNQGKIFK 432          
BLAST of FC900542 vs. ExPASy Swiss-Prot
Match: EF1G_MACFA (Elongation factor 1-gamma OS=Macaca fascicularis GN=EEF1G PE=2 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 4.957e-61
Identity = 106/163 (65.03%), Postives = 132/163 (80.98%), Query Frame = 3
Query:  174 ESKDPFDSMPKGTFNMDDFKRCYSNEDE-EKSIPYFWEKFDPENYSIWYGEYKYPEELSKVFMSCNLITGMFQRLDKMRKQAFASVCLFGGDNDSSISGVWVWRGKDLAFPLSPDWTIDYESYDWTKLDPASPDTKKMVKDYFSWSGQ-DKKGRKFNQGKIFK 656
            ++KDPF  +PK TF +D+FKR YSNED    ++PYFWE FD + +S+WY EY++PEEL++ FMSCNLITGMFQRLDK+RK AFASV LFG +N SSISGVWV+RG++LAFPLSPDW +DYESY W KLDP S +T+ +V++YFSW G     G+ FNQGKIFK
Sbjct:  275 KAKDPFAHLPKSTFVLDEFKRKYSNEDTLSVALPYFWEHFDKDGWSLWYSEYRFPEELTQTFMSCNLITGMFQRLDKLRKNAFASVILFGTNNSSSISGVWVFRGQELAFPLSPDWQVDYESYTWRKLDPGSEETQTLVREYFSWEGAFQHVGKAFNQGKIFK 437          
BLAST of FC900542 vs. ExPASy Swiss-Prot
Match: EF1G_HUMAN (Elongation factor 1-gamma OS=Homo sapiens GN=EEF1G PE=1 SV=3)

HSP 1 Score: 234.187 bits (596), Expect = 4.957e-61
Identity = 106/163 (65.03%), Postives = 132/163 (80.98%), Query Frame = 3
Query:  174 ESKDPFDSMPKGTFNMDDFKRCYSNEDE-EKSIPYFWEKFDPENYSIWYGEYKYPEELSKVFMSCNLITGMFQRLDKMRKQAFASVCLFGGDNDSSISGVWVWRGKDLAFPLSPDWTIDYESYDWTKLDPASPDTKKMVKDYFSWSGQ-DKKGRKFNQGKIFK 656
            ++KDPF  +PK TF +D+FKR YSNED    ++PYFWE FD + +S+WY EY++PEEL++ FMSCNLITGMFQRLDK+RK AFASV LFG +N SSISGVWV+RG++LAFPLSPDW +DYESY W KLDP S +T+ +V++YFSW G     G+ FNQGKIFK
Sbjct:  275 KAKDPFAHLPKSTFVLDEFKRKYSNEDTLSVALPYFWEHFDKDGWSLWYSEYRFPEELTQTFMSCNLITGMFQRLDKLRKNAFASVILFGTNNSSSISGVWVFRGQELAFPLSPDWQVDYESYTWRKLDPGSEETQTLVREYFSWEGAFQHVGKAFNQGKIFK 437          
BLAST of FC900542 vs. ExPASy Swiss-Prot
Match: EF1G_RAT (Elongation factor 1-gamma OS=Rattus norvegicus GN=Eef1g PE=2 SV=3)

HSP 1 Score: 233.032 bits (593), Expect = 1.104e-60
Identity = 106/163 (65.03%), Postives = 131/163 (80.37%), Query Frame = 3
Query:  174 ESKDPFDSMPKGTFNMDDFKRCYSNEDE-EKSIPYFWEKFDPENYSIWYGEYKYPEELSKVFMSCNLITGMFQRLDKMRKQAFASVCLFGGDNDSSISGVWVWRGKDLAFPLSPDWTIDYESYDWTKLDPASPDTKKMVKDYFSWSGQ-DKKGRKFNQGKIFK 656
            ++KDPF  +PK TF +D+FKR YSNED    ++PYFWE FD + +S+WY EY++PEEL++ FMSCNLITGMFQRLDK+RK AFASV LFG +N SSISGVWV+RG+DLAFPLSPDW +DYESY W KLDP S +T+ +V++YFSW G     G+  NQGKIFK
Sbjct:  275 KAKDPFAHLPKSTFVLDEFKRKYSNEDTLSVALPYFWEHFDKDGWSLWYAEYRFPEELTQTFMSCNLITGMFQRLDKLRKNAFASVILFGTNNSSSISGVWVFRGQDLAFPLSPDWQVDYESYTWRKLDPGSEETQTLVREYFSWEGAFQHVGKAVNQGKIFK 437          
BLAST of FC900542 vs. ExPASy Swiss-Prot
Match: EF1G_RABIT (Elongation factor 1-gamma OS=Oryctolagus cuniculus GN=EEF1G PE=2 SV=3)

HSP 1 Score: 232.646 bits (592), Expect = 1.442e-60
Identity = 103/163 (63.19%), Postives = 133/163 (81.60%), Query Frame = 3
Query:  174 ESKDPFDSMPKGTFNMDDFKRCYSNEDE-EKSIPYFWEKFDPENYSIWYGEYKYPEELSKVFMSCNLITGMFQRLDKMRKQAFASVCLFGGDNDSSISGVWVWRGKDLAFPLSPDWTIDYESYDWTKLDPASPDTKKMVKDYFSWSGQ-DKKGRKFNQGKIFK 656
            ++KDPF  +PK TF +D+FKR YSNED    ++PYFWE FD + +S+WY EY++PEEL++ FMSCNLITGMFQRLDK+RK AFASV LFG +N SSISG+WV+RG++LAFPLSPDW +DYESY W KLDP+S +T+ +V++YF+W G     G+ FNQGK+FK
Sbjct:  275 KAKDPFAHLPKSTFVLDEFKRKYSNEDTLSVALPYFWEHFDKDGWSLWYAEYRFPEELTQTFMSCNLITGMFQRLDKLRKNAFASVILFGTNNSSSISGIWVFRGQELAFPLSPDWQVDYESYTWRKLDPSSEETQTLVREYFAWEGAFQHVGKAFNQGKVFK 437          
BLAST of FC900542 vs. ExPASy Swiss-Prot
Match: EF1G_HORSE (Elongation factor 1-gamma OS=Equus caballus GN=EEF1G PE=2 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 1.883e-60
Identity = 105/163 (64.42%), Postives = 131/163 (80.37%), Query Frame = 3
Query:  174 ESKDPFDSMPKGTFNMDDFKRCYSNEDE-EKSIPYFWEKFDPENYSIWYGEYKYPEELSKVFMSCNLITGMFQRLDKMRKQAFASVCLFGGDNDSSISGVWVWRGKDLAFPLSPDWTIDYESYDWTKLDPASPDTKKMVKDYFSWSGQ-DKKGRKFNQGKIFK 656
            ++KDPF  +PK TF +D+FKR YSNED    ++PYFWE FD + +S+WY EY++PEEL++ FMSCNLITGMFQRLDK+RK AFASV LFG +N SSISGVWV+RG++LAFPLSPDW +DYESY W KLDP S + + +V++YFSW G     G+ FNQGKIFK
Sbjct:  275 KAKDPFAHLPKSTFVLDEFKRKYSNEDTLSVALPYFWEHFDKDGWSLWYSEYRFPEELTQTFMSCNLITGMFQRLDKLRKNAFASVILFGTNNSSSISGVWVFRGQELAFPLSPDWQVDYESYTWRKLDPGSEEAQTLVREYFSWEGAFQHVGKAFNQGKIFK 437          
BLAST of FC900542 vs. ExPASy Swiss-Prot
Match: EF1G_DANRE (Elongation factor 1-gamma OS=Danio rerio GN=eef1g PE=2 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 2.460e-60
Identity = 108/163 (66.26%), Postives = 130/163 (79.75%), Query Frame = 3
Query:  174 ESKDPFDSMPKGTFNMDDFKRCYSNEDEEK-SIPYFWEKFDPENYSIWYGEYKYPEELSKVFMSCNLITGMFQRLDKMRKQAFASVCLFGGDNDSSISGVWVWRGKDLAFPLSPDWTIDYESYDWTKLDPASPDTKKMVKDYFSWSGQDKK-GRKFNQGKIFK 656
            ++KDPF  +PK +F MD+FKR YSNED    ++PYFW+ FD E +SIWY EY++PEEL+  FMSCNLITGMFQRLDK+RK AFASV LFG +NDS ISG+WV+RG+DLAFPLS DW IDYESY W KLD  S + K MVK+YF+W G+ K  G+ FNQGKIFK
Sbjct:  280 KAKDPFAHLPKSSFVMDEFKRKYSNEDTMTVALPYFWDHFDREGFSIWYAEYRFPEELTMAFMSCNLITGMFQRLDKLRKNAFASVILFGANNDSCISGIWVFRGQDLAFPLSDDWQIDYESYTWRKLDVDSEECKTMVKEYFAWEGEFKHVGKPFNQGKIFK 442          
The following BLAST results are available for this feature:
BLAST of FC900542 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
EF1G_ARTSA1.696e-7779.50Elongation factor 1-gamma OS=Artemia salina PE=1 S... [more]
EF1G_DROME3.198e-7680.75Elongation factor 1-gamma OS=Drosophila melanogast... [more]
EF1G_CAEEL1.704e-6165.68Probable elongation factor 1-gamma OS=Caenorhabdit... [more]
EF1G_PIG4.957e-6165.03Elongation factor 1-gamma (Fragment) OS=Sus scrofa... [more]
EF1G_MACFA4.957e-6165.03Elongation factor 1-gamma OS=Macaca fascicularis G... [more]
EF1G_HUMAN4.957e-6165.03Elongation factor 1-gamma OS=Homo sapiens GN=EEF1G... [more]
EF1G_RAT1.104e-6065.03Elongation factor 1-gamma OS=Rattus norvegicus GN=... [more]
EF1G_RABIT1.442e-6063.19Elongation factor 1-gamma OS=Oryctolagus cuniculus... [more]
EF1G_HORSE1.883e-6064.42Elongation factor 1-gamma OS=Equus caballus GN=EEF... [more]
EF1G_DANRE2.460e-6066.26Elongation factor 1-gamma OS=Danio rerio GN=eef1g ... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA28DE03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA28DE03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC900542 ID=FC900542; Name=FC900542; organism=Citrus clementina; type=EST; length=683bp
TGCTCCCCGAGCCCGTGCTCACGGACAAGCCGGTCGTGTACGACCCCAAC
AAGTTCAACCAGTCCCAGCCCAAGGCCAAGAAGGACGCCCCTAAGAAGGA
CGCTCCCAAGAAGGAAGCGGCTCCCAAGGAGGCCAAGCCCGCCCCCGAGG
ACGACATTGATGAGAAGCCAAAGGAGTCAAAGGACCCCTTCGATTCAATG
CCTAAAGGAACCTTCAACATGGATGACTTCAAGCGCTGCTACTCAAATGA
AGACGAGGAGAAGTCCATCCCTTACTTCTGGGAGAAGTTTGACCCGGAGA
ACTACTCCATCTGGTACGGCGAGTACAAGTACCCCGAGGAGCTGTCCAAG
GTCTTCATGAGCTGTAACCTCATCACAGGCATGTTCCAGCGCCTGGACAA
GATGCGCAAGCAGGCGTTCGCGTCGGTGTGCCTGTTCGGCGGAGACAACG
ACTCCAGCATCTCGGGCGTGTGGGTGTGGCGCGGCAAGGACCTCGCCTTC
CCGCTGTCGCCCGACTGGACCATCGACTACGAGTCCTACGACTGGACCAA
GCTGGACCCAGCCTCCCCCGACACCAAGAAGATGGTCAAGGACTACTTCT
CGTGGAGCGGACAGGACAAGAAGGGCCGCAAGTTCAACCAGGGCAAGATC
TTCAAGTGAACGCCTTAATAAATACCCTTTATT
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