FC902027

Overview
NameFC902027
Unique NameFC902027
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length642
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC902027 vs. ExPASy Swiss-Prot
Match: CCS_CITSI (Capsanthin/capsorubin synthase, chromoplast OS=Citrus sinensis GN=CCS PE=3 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.027e-57
Identity = 109/126 (86.51%), Postives = 111/126 (88.10%), Query Frame = -1
Query:  265 LAPALGDAIAECLGSTRMIRGRPLHQKVWNGLWPIDRRCNREFFSFGMGTLLKLDLKGTRGFFDAFFDLNPPYWHGFLSSRLFFAELAGLSLFFFGHASNFSRFDIVTKGPFPLVKKMGNFAPETL 642
            LAPAL DAIAECLGSTRMIRGRPLHQKVWNGLWPIDRRCNREF+SFGM TLLKLDLKGTR FFDAFFDLNP YWHGFLSSRL  AELAGLSL  FGHASN SR DIVTK P PLVK MGN A ET+
Sbjct:  378 LAPALADAIAECLGSTRMIRGRPLHQKVWNGLWPIDRRCNREFYSFGMETLLKLDLKGTRRFFDAFFDLNPYYWHGFLSSRLSLAELAGLSLSLFGHASNSSRLDIVTKCPVPLVKMMGNLALETI 503          
BLAST of FC902027 vs. ExPASy Swiss-Prot
Match: NXS_SOLTU (Neoxanthin synthase, chloroplastic OS=Solanum tuberosum GN=NXS PE=1 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.218e-42
Identity = 86/126 (68.25%), Postives = 97/126 (76.98%), Query Frame = -1
Query:  265 LAPALGDAIAECLGSTRMIRGRPLHQKVWNGLWPIDRRCNREFFSFGMGTLLKLDLKGTRGFFDAFFDLNPPYWHGFLSSRLFFAELAGLSLFFFGHASNFSRFDIVTKGPFPLVKKMGNFAPETL 642
            LAP L +AI + LGSTRMIRG  L+ +VWNGLWP+DRRC  E +SFGM TLLKLDLKGTR  FDAFFDL+P YW GFLSSRL   ELA LSL  FGH SN +R DIVTK P PLV+ +GN A E+L
Sbjct:  373 LAPVLAEAIVKGLGSTRMIRGSQLYHRVWNGLWPLDRRCIGECYSFGMETLLKLDLKGTRRLFDAFFDLDPKYWQGFLSSRLSVKELAILSLCLFGHGSNLTRLDIVTKCPVPLVRLIGNLAIESL 498          
BLAST of FC902027 vs. ExPASy Swiss-Prot
Match: CCS_CAPAN (Capsanthin/capsorubin synthase, chromoplast OS=Capsicum annuum GN=CCS PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.591e-42
Identity = 86/126 (68.25%), Postives = 97/126 (76.98%), Query Frame = -1
Query:  265 LAPALGDAIAECLGSTRMIRGRPLHQKVWNGLWPIDRRCNREFFSFGMGTLLKLDLKGTRGFFDAFFDLNPPYWHGFLSSRLFFAELAGLSLFFFGHASNFSRFDIVTKGPFPLVKKMGNFAPETL 642
            LAP L +AI E LGSTRMIRG  L+ +VWNGLWP DRR  RE + FGM TLLKLDL+GTR  FDAFFD++P YWHGFLSSRL   ELA LSL+ FGHASN +R DIVTK   PLVK +GN A E+L
Sbjct:  373 LAPVLAEAIVESLGSTRMIRGSQLYHRVWNGLWPSDRRRVRECYCFGMETLLKLDLEGTRRLFDAFFDVDPKYWHGFLSSRLSVKELAVLSLYLFGHASNLARLDIVTKCTVPLVKLLGNLAIESL 498          
BLAST of FC902027 vs. ExPASy Swiss-Prot
Match: LCYB_SOLLC (Lycopene beta cyclase, chloroplastic OS=Solanum lycopersicum GN=LCY1 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 7.916e-34
Identity = 72/119 (60.50%), Postives = 79/119 (66.39%), Query Frame = -1
Query:  283 APALGDAIAECLGSTRMIRGRPLHQKVWNGLWPIDRRCNREFFSFGMGTLLKLDLKGTRGFFDAFFDLNPPYWHGFLSSRLFFAELAGLSLFFFGHASNFSRFDIVTKGPFPLVKKMGN 639
            AP + +AI + LGS R   G  L   VW  LWPI+RR  REFF FGM  LLKLDL  TR FFDAFFDL P YWHGFLSSRLF  EL    L  F HASN SRF+I+TKG  PLV  + N
Sbjct:  376 APVVANAIIQYLGSERSHSGNELSTAVWKDLWPIERRRQREFFCFGMDILLKLDLPATRRFFDAFFDLEPRYWHGFLSSRLFLPELIVFGLSLFSHASNTSRFEIMTKGTVPLVNMINN 494          
BLAST of FC902027 vs. ExPASy Swiss-Prot
Match: LCYB_ARATH (Lycopene beta cyclase, chloroplastic OS=Arabidopsis thaliana GN=LCY1 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.493e-32
Identity = 71/125 (56.80%), Postives = 81/125 (64.80%), Query Frame = -1
Query:  271 APALGDAIAECLGS--TRMIRGRPLHQKVWNGLWPIDRRCNREFFSFGMGTLLKLDLKGTRGFFDAFFDLNPPYWHGFLSSRLFFAELAGLSLFFFGHASNFSRFDIVTKGPFPLVKKMGNFAPE 639
            AP + +AI   LGS  +  +RG  L  +VW  LWPI+RR  REFF FGM  LLKLDL  TR FFDAFFDL P YWHGFLSSRLF  EL    L  F HASN SR +I+TKG  PL K + N   +
Sbjct:  375 APIVANAIVRYLGSPSSNSLRGDQLSAEVWRDLWPIERRRQREFFCFGMDILLKLDLDATRRFFDAFFDLQPHYWHGFLSSRLFLPELLVFGLSLFSHASNTSRLEIMTKGTVPLAKMINNLVQD 499          
BLAST of FC902027 vs. ExPASy Swiss-Prot
Match: LCYB_TOBAC (Lycopene beta cyclase, chloroplastic OS=Nicotiana tabacum GN=LCY1 PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.326e-32
Identity = 69/124 (55.65%), Postives = 79/124 (63.71%), Query Frame = -1
Query:  268 APALGDAIAECLGSTRMIRGRPLHQKVWNGLWPIDRRCNREFFSFGMGTLLKLDLKGTRGFFDAFFDLNPPYWHGFLSSRLFFAELAGLSLFFFGHASNFSRFDIVTKGPFPLVKKMGNFAPET 639
            AP + +AI   LGS + + G  L   VW  LWPI+RR  REFF FGM  LLKLDL  TR FFDAFFDL P YWHGFLSSRL+  EL    L  F  ASN SR +I+TKG  PLV  + N   +T
Sbjct:  376 APVVANAIIHYLGSEKDLLGNELSAAVWKDLWPIERRRQREFFCFGMDILLKLDLPATRRFFDAFFDLEPRYWHGFLSSRLYLPELIFFGLSLFSRASNTSRIEIMTKGTLPLVNMINNLLQDT 499          
BLAST of FC902027 vs. ExPASy Swiss-Prot
Match: LCYB_CAPAN (Lycopene beta cyclase, chloroplastic/chromoplastic OS=Capsicum annuum GN=LCY1 PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.326e-32
Identity = 70/119 (58.82%), Postives = 77/119 (64.71%), Query Frame = -1
Query:  283 APALGDAIAECLGSTRMIRGRPLHQKVWNGLWPIDRRCNREFFSFGMGTLLKLDLKGTRGFFDAFFDLNPPYWHGFLSSRLFFAELAGLSLFFFGHASNFSRFDIVTKGPFPLVKKMGN 639
            AP + +AI + L S R   G  L   VW  LWPI+RR  REFF FGM  LLKLDL  TR FFDAFFDL P YWHGFLSSRLF  EL    L  F HASN SR +I+TKG  PLV  + N
Sbjct:  374 APVVANAIIQYLSSERSHSGDELSAAVWKDLWPIERRRQREFFCFGMDILLKLDLPATRRFFDAFFDLEPRYWHGFLSSRLFLPELIVFGLSLFSHASNTSRLEIMTKGTLPLVHMINN 492          
BLAST of FC902027 vs. ExPASy Swiss-Prot
Match: LCYB_NARPS (Lycopene beta cyclase, chloroplastic/chromoplastic OS=Narcissus pseudonarcissus GN=LCY1 PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.815e-31
Identity = 66/123 (53.66%), Postives = 78/123 (63.41%), Query Frame = -1
Query:  271 APALGDAIAECLGSTRMIRGRPLHQKVWNGLWPIDRRCNREFFSFGMGTLLKLDLKGTRGFFDAFFDLNPPYWHGFLSSRLFFAELAGLSLFFFGHASNFSRFDIVTKGPFPLVKKMGNFAPE 639
            AP + ++I + L S   + G  L   VW  LWPI+RR  REFF FGM  LLKLDL+GTR FFDAFFDL P YWHGFLSSRLF  EL    L  F HASN  + +I+ KG  PLV  + N   +
Sbjct:  379 APIVANSIVQYLVSDSGLSGNDLSADVWKDLWPIERRRQREFFCFGMDILLKLDLEGTRRFFDAFFDLEPRYWHGFLSSRLFLPELVPFGLSLFSHASNTCKLEIMAKGTLPLVNMINNLVQD 501          
BLAST of FC902027 vs. ExPASy Swiss-Prot
Match: LCYE_SOLLC (Lycopene epsilon cyclase, chloroplastic OS=Solanum lycopersicum GN=CRTL-E-1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.227e-11
Identity = 33/81 (40.74%), Postives = 47/81 (58.02%), Query Frame = -1
Query:  322 KVWNGLWPIDRRCNREFFSFGMGTLLKLDLKGTRGFFDAFFDLNPPYWHGFLSSRLFFAELAGLSLFFFGHASNFSRFDIV 564
            + WN LWP +R+  R FF FG+  +L+LD++G R FF AFF +    W GFL S L  A+L   + + F  A N  R  ++
Sbjct:  427 QAWNTLWPQERKRQRSFFLFGLALILQLDIEGIRSFFRAFFRVPKWMWQGFLGSSLSSADLMLFAFYMFIIAPNDMRKGLI 507          
The following BLAST results are available for this feature:
BLAST of FC902027 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
CCS_CITSI1.027e-5786.51Capsanthin/capsorubin synthase, chromoplast OS=Cit... [more]
NXS_SOLTU1.218e-4268.25Neoxanthin synthase, chloroplastic OS=Solanum tube... [more]
CCS_CAPAN1.591e-4268.25Capsanthin/capsorubin synthase, chromoplast OS=Cap... [more]
LCYB_SOLLC7.916e-3460.50Lycopene beta cyclase, chloroplastic OS=Solanum ly... [more]
LCYB_ARATH1.493e-3256.80Lycopene beta cyclase, chloroplastic OS=Arabidopsi... [more]
LCYB_TOBAC3.326e-3255.65Lycopene beta cyclase, chloroplastic OS=Nicotiana ... [more]
LCYB_CAPAN3.326e-3258.82Lycopene beta cyclase, chloroplastic/chromoplastic... [more]
LCYB_NARPS2.815e-3153.66Lycopene beta cyclase, chloroplastic/chromoplastic... [more]
LCYE_SOLLC4.227e-1140.74Lycopene epsilon cyclase, chloroplastic OS=Solanum... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA63BH06FM1 IVIA1 Citrus clementina cDNA clone IC0AAA63BH06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC902027 ID=FC902027; Name=FC902027; organism=Citrus clementina; type=EST; length=642bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCAAAAACCCT
TTCTTCCCTTGTAAAAAAAATAAAGTGAAACATAAACACAATAACATGTA
TAAAGCCATCATTTTCAACCATAAAATCAAATTTTTTCATTTCTATTATC
CATCATTTCAAGGGCACAAATGATACCGACCTCCACTTTTTAAATTCGTT
GTATTCATAACATGTTACGGGGTACGGCAAAAAACCCTAATTATTCAAAA
ACATTTAATCTTCAAAGGGTTTCAGGGGCAAAATTCCCCATCTTTTTAAC
CAAAGGAAAAGGGCCCTTGGTAACAATATCAAACCTGGAAAAATTCGAGG
CGTGCCCAAAAAAAAACAAGCTTAGGCCAGCAAGCTCTGCAAAAAACAAC
CTTGAGGACAAAAACCCATGCCAGTAGGGAGGATTCAAATCAAAAAAAGC
ATCAAAAAATCCCCTAGTCCCCTTCAAATCCAGCTTCAACAAAGTCCCCA
TACCAAATGAAAAAAACTCCCTATTGCATCTTCTGTCAATTGGCCACAAC
CCATTCCACACTTTCTGATGAAGGGGCCTGCCTCTGATCATCCGGGTTGA
GCCAAGGCACTCAGCTATTGCATCACCCAACGCAGGGGCCAA
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