FC904698

Overview
NameFC904698
Unique NameFC904698
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length927
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC904698 vs. ExPASy Swiss-Prot
Match: Y1491_ARATH (DUF246 domain-containing protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.788e-23
Identity = 52/108 (48.15%), Postives = 71/108 (65.74%), Query Frame = 1 
Query:  538 SNSNIVKLWKPPSNRDFVPCVEPSSNYTSPT-ESRGYLLVHTNGGLNQMRAGICDMVAVARIINATLVVPELDKRSFWQDSSNFSDVFDEDHFINSLANDVKVIKKVP 858
            S  N+ +LW+   +  + P   P S++  PT E+ GYL V  NGGLNQ R+ IC+ V  ARI+NATLV+PELD  SFW D S F  ++D +HFI +L  DVK++ K+P
Sbjct:   55 SKINVEELWESAKSGGWRPSSAPRSDWPPPTKETNGYLRVRCNGGLNQQRSAICNAVLAARIMNATLVLPELDANSFWHDDSGFQGIYDVEHFIETLKYDVKIVGKIP 162
The following BLAST results are available for this feature:
BLAST of FC904698 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y1491_ARATH1.788e-2348.15DUF246 domain-containing protein At1g04910 OS=Arab... [more]
back to top
Properties
Property NameValue
Genbank descriptionIC0AAA68CC08RM1 IVIA1 Citrus clementina cDNA clone IC0AAA68CC08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC904698 ID=FC904698; Name=FC904698; organism=Citrus clementina; type=EST; length=927bp
AAGGAGGTACATACAGGATACAAGAACAGCCGACCGCTGTCTTTCGTCTC
CATTGAAAGCACAGAATCTGGAGTGGAGAGGAGACACAGACACTCCGGCT
CAGTTGTGATCTCCTAAATTCTTTCTTTTTTTGAAAATTTTGTCAACGCG
TCGTCGTTTAAACTTCACTCAGTTTGCGTTGCATTTCACATCAGAGAGAG
AGAGAGAGTGTGTGTGCCGCTTAGTTGTTAAATTGAAGAGAGGAAGATGC
AGCGGCGGAGGAGACGAGTGGTGGTTTTGCTGAGGAAGATGCTAACGTGC
GCCATATGCGTAATAGCGCTGGTGGCGTTGCTGTCCGTGCACGTACACGT
GCCCGTTTTTCCTTCCTTTAAAGTGCCGGACTTCGCTGATCCTTACAAGC
TCCCCACTATTACTCAGCAACACGAAATCAAGTACCAAATATTGAGCACA
GAGCAAAGCTGGACTGAAGAACTAGCTCCGCCTCATTTGTCCCAAACTCC
GTTACCTTCTCGCAAGTTGGATGTTACTGGTGGGAATTCAAATTCGAATA
TCGTTAAGCTGTGGAAGCCTCCTTCAAATCGTGATTTTGTGCCATGTGTG
GAACCTAGTTCTAATTATACATCTCCTACGGAGTCCCGTGGATATCTTCT
GGTTCATACAAATGGTGGACTCAACCAGATGCGTGCTGGGATATGCGACA
TGGTAGCAGTAGCTCGTATCATAAATGCCACTCTTGTAGTTCCAGAGCTT
GATAAACGGTCATTTTGGCAAGATTCTAGCAACTTTTCTGATGTTTTTGA
TGAAGATCATTTCATTAACTCTTTGGCTAATGATGTGAAAGTCATAAAAA
AGGTTCCTAAAGAACTCAGTACGGCTGCGAGAGCAGTTAAACATTTCAGA
AGCTGGTCTGGTATGGATTACTATGAG
back to top