FC904699

Overview
NameFC904699
Unique NameFC904699
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length879
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC904699 vs. ExPASy Swiss-Prot
Match: NSUN5_MOUSE (Putative methyltransferase NSUN5 OS=Mus musculus GN=Nsun5 PE=2 SV=2)

HSP 1 Score: 167.933 bits (424), Expect = 6.688e-41
Identity = 92/208 (44.23%), Postives = 127/208 (61.06%), Query Frame = 1
Query:  163 VLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCSIHQVENEDVIKSVLPIAMSFGFQLATSFPQWNCRGLPVFEGSEHLLRTDPVED-KEGFFIALFVKGNII 783
            V+DAC+APGNKT ++AAL+K +GKI A + + +R+  +   +  +G +  E+   DFL + P D  YS+V+ ILLDPSCSGSG  + +L+         H       ERL  L+ FQ++AL HAL FP ++R+VYSTCS+ Q ENEDV++  L    S  F+LA   P W  RGL  F GSEH LR  P      GFFIA+F +  ++
Sbjct:  230 VIDACAAPGNKTSYIAALLKNQGKIFAFDQDAKRLAAMATLVARAGVSCCELAEKDFLTVSPSDQRYSQVQYILLDPSCSGSGMLSRQLEE--------HGEGTPSKERLQALAGFQQRALCHALRFPSLQRLVYSTCSLCQEENEDVVQEALQ-HNSGTFRLAPVLPTWPHRGLSTFPGSEHCLRASPETTLTGGFFIAVFERAEVV 428          
BLAST of FC904699 vs. ExPASy Swiss-Prot
Match: NSUN5_HUMAN (Putative methyltransferase NSUN5 OS=Homo sapiens GN=NSUN5 PE=1 SV=2)

HSP 1 Score: 167.548 bits (423), Expect = 8.735e-41
Identity = 92/201 (45.77%), Postives = 125/201 (62.19%), Query Frame = 1
Query:  163 VLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCSIHQVENEDVIKSVLPIAMSFGFQLATSFPQWNCRGLPVFEGSEHLLRTDPVED-KEGFFIAL 762
            V+DAC+APGNKT HLAAL+K +GKI A +L+ +R+  +   +  +G +  E+   DFL + P DP Y EV  ILLDPSCSGSG  + +L+          T  P    RL+ L+ FQ++AL HAL+FP ++R+VYSTCS+ Q ENEDV++  L       F+LA + P W  RGL  F G+EH LR  P      GFF+A+
Sbjct:  230 VIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYILLDPSCSGSGMPSRQLE-----EPGAGTPSPV---RLHALAGFQQRALCHALTFPSLQRLVYSTCSLCQEENEDVVRDALQ-QNPGAFRLAPALPAWPHRGLSTFPGAEHCLRASPETTLSSGFFVAV 421          
BLAST of FC904699 vs. ExPASy Swiss-Prot
Match: YEY6_SCHPO (Putative methyltransferase C2C4.06c OS=Schizosaccharomyces pombe GN=SPAC2C4.06c PE=2 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 1.351e-33
Identity = 88/206 (42.72%), Postives = 116/206 (56.31%), Query Frame = 1
Query:  163 VLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTE-MERLNKLSAFQKKALRHALSFPGVERVVYSTCSIHQVENEDVIKSVLPIAMSFGF-QLATSFPQWNCRGLPVF----EGSEHLLRTDP-VEDKEGFFIA 759
            ++D C+APGNKT HLAA    K  I A E + +RV+ L+  + +SGA N+ + H DF   DPK   Y  V  ILLDPSCSGSG  + R D+LL     G+  D TE  ERL  L +FQ   L+HAL FP    V YSTCS+H++ENE V+  VL     +    L  + P W  RG+P +      +E ++R  P      GFF+A
Sbjct:  214 IIDGCAAPGNKTTHLAACFP-KSHIFAFERDAKRVQTLRKMVGISGANNVTIEHQDFTLTDPKSDLYRNVTHILLDPSCSGSGIVS-RQDYLL-----GNEQDVTEDTERLENLCSFQSTILKHALQFPNCRHVTYSTCSVHRLENEQVVCEVLSQEPDWKCNSLTKTLPNWKTRGIPEYCAQPSMAEGMIRCKPGAGGTIGFFVA 412          
BLAST of FC904699 vs. ExPASy Swiss-Prot
Match: NSN5C_HUMAN (Putative methyltransferase NSUN5C OS=Homo sapiens GN=NSUN5C PE=1 SV=2)

HSP 1 Score: 139.813 bits (351), Expect = 1.950e-32
Identity = 85/208 (40.87%), Postives = 119/208 (57.21%), Query Frame = 1
Query:  193 KTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCSIHQVENEDVIKSVLPIAMSFGFQLATSFPQWNCRGLPVFEGSEHLLRTDPVED-KEGFFIALFVKGNIIDRSKNPTMPS 813
            KT HLAAL+K +GKI A +L+  R+  +   +  +G +  E+   DFL + P DP Y EV  +LLDPSCSGSG  + +L+          T  P    RL+ L+ FQ++AL HAL+FP ++R+VYS CS+ Q ENED+++  L       F+LA + P    RGL  F G+EH LR  P      GFF+A      +I+R + PT  S
Sbjct:   56 KTSHLAALLKNQGKIFAFDLDARRLASMATLLAWAGVSCCELAEEDFLAVSPLDPRYREVHYVLLDPSCSGSGMPSRQLE-----EPGAGTPSPV---RLHALAGFQQRALCHALTFPSLQRLVYSMCSLCQEENEDMVQDALQ-QNPGAFRLAPALPARPHRGLSTFPGAEHCLRASPKTTLSGGFFVA------VIERVEMPTSAS 248          
BLAST of FC904699 vs. ExPASy Swiss-Prot
Match: NSN5B_HUMAN (NOL1/NOP2/Sun domain family member 5B OS=Homo sapiens GN=NSUN5B PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.553e-24
Identity = 70/170 (41.18%), Postives = 95/170 (55.88%), Query Frame = 1
Query:  298 GAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCSIHQVENEDVIKSVLPIAMSFGFQLATSFPQWNCRGLPVFEGSEHLLRTDPVED-KEGFFIALFVKGNIIDRSKNPT 804
            G +  E+   DFL + P DP Y EV  +LLDPSCSGSG  + +L+          T  P    RL+ L+ FQ++AL HAL+FP ++R+VYS CS+ Q ENED++   L       F+LA + P    RGL  F G+EH LR  P      GFF+A      +I+R + PT
Sbjct:    9 GVSCCELAEEDFLAVSPLDPRYREVHYVLLDPSCSGSGMPSRQLED-----PGAGTPSPV---RLHALAGFQQRALCHALTFPSLQRLVYSMCSLCQEENEDMVPDALQ-QNPGAFRLAPALPARPHRGLSTFPGAEHCLRASPKTTLSGGFFVA------VIERVEMPT 163          
BLAST of FC904699 vs. ExPASy Swiss-Prot
Match: YNC2_YEAST (Uncharacterized protein YNL022C OS=Saccharomyces cerevisiae GN=YNL022C PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 6.289e-23
Identity = 80/231 (34.63%), Postives = 114/231 (49.35%), Query Frame = 1
Query:  163 VLDACSAPGNKTVHLAALM------KGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERL---------------DHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCSIHQVENEDVIKSVL--PIAMSFGFQLATS---FPQWNCRGLPVFEGSEHLLRT----DPVEDKEGFFIAL 762
            V+D+CSAPGNKT H A+ +          +I A E + ER + L+  IK++G + NI V  GDF  L   +  Y +V   ++DPSCSGSG    +                  ++P       A      RL KLS+FQ + ++HA+SFP  +++VYSTCSIH  ENE V+  +L       +G+++A      P W  RG    E  E + R     DP +  EG   AL
Sbjct:  246 VIDSCSAPGNKTTHTASYIYPEPPKDNNTRIYAFEKDPERAKVLQKMIKIAGCSPNISVNVGDFTKLATPEK-YKDVTCFIVDPSCSGSGIFGRKFFDSFNRRKIDDKDDDGGIVPDEQEEFIAKEELQTRLAKLSSFQFQMVKHAMSFPAAKKIVYSTCSIHAEENERVVIDLLLDKSVREWGWKVAPKREVIPSWPRRG--KVEEFEEVFRDGVTYDPQQLAEGCIRAL 473          
BLAST of FC904699 vs. ExPASy Swiss-Prot
Match: RSMF_SHEPA (Ribosomal RNA small subunit methyltransferase F OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=rsmF PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.559e-16
Identity = 74/212 (34.91%), Postives = 105/212 (49.53%), Query Frame = 1
Query:  163 VLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCSIHQVENEDV---IKSVLPIAMSFGFQLATSFPQWNCRGLPVFEGSEHLLRTDPVEDKEGFFIALFVKGNIIDR 789
            VLD  SAPG+KT  +AALMK +G ++A E +  RV+ L   +   G AN  + H D       +  +    +ILLD  CSG GT  +  D  L +  +       E ++    SAF       AL   G   +VYSTC++ + EN+DV   +KS+   A+ FG  LAT FPQ         EG  H+     + D EGFF+A   K + ++R
Sbjct:  131 VLDMASAPGSKTTQIAALMKNQGLLIANEYSASRVKVLHANVARMGVANCALTHFDARVFG--EYMFETFDSILLDAPCSGEGTIRKDPD-ALKNWDNNDDKGIVETQKALIESAFL------ALKVGG--SLVYSTCALSRQENQDVCHHLKSLYGDAVEFG-SLATLFPQ--ADKACTEEGFLHV--WPQIYDSEGFFVAKIYKTSAVER 326          
BLAST of FC904699 vs. ExPASy Swiss-Prot
Match: RSMF_SHESH (Ribosomal RNA small subunit methyltransferase F OS=Shewanella sediminis (strain HAW-EB3) GN=rsmF PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.270e-15
Identity = 72/215 (33.49%), Postives = 104/215 (48.37%), Query Frame = 1
Query:  163 VLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHL-LPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCSIHQVENEDV---IKSVLPIAMSFGFQLATSFPQWNCRGLPVFEGSEHLLRTDPVEDKEGFFIALFVKGNIIDRSK 795
            +LD  SAPG+KT  +AA+M   G ++A E +  RV+ L   +   G +N  + H D       +  Y +  AILLD  CSG GT   R D L L +      +   E ++    SAF        L+      +VYSTC++ ++EN+DV   ++S  P A+ F   LAT FP  +       EG  H+     + D EGFFIA   K   ++R K
Sbjct:  117 ILDMASAPGSKTTQIAAMMDNSGLLIANEYSSSRVKVLHANVLRMGVSNTALTHFDARVFG--EYLYDQFDAILLDAPCSGEGTI--RKDPLALNNWGLAENSAIAETQKALLESAF--------LALKTGGSLVYSTCALSKLENQDVCEHLRSTFPEAVEFE-SLATLFP--DADKACTDEGFLHV--WPQIYDSEGFFIAKITKTCDVERQK 314          
BLAST of FC904699 vs. ExPASy Swiss-Prot
Match: RSMF_AERS4 (Ribosomal RNA small subunit methyltransferase F OS=Aeromonas salmonicida (strain A449) GN=rsmF PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.695e-15
Identity = 72/207 (34.78%), Postives = 102/207 (49.28%), Query Frame = 1
Query:  163 VLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALR---HALSFPGVERVVYSTCSIHQVENEDVIKSVLPIAMSFG-----FQLATSFPQWNCRGLPVFEGSEHLLRTDPVEDKEGFFIA 759
            +LDA +APG+KT  +AALM  +G +VA E +  R++ L   I+  G  N+ + H D        P   +  AILLD  CSG GT  +  D L              +E +++++A Q+  L    HAL   GV  +VYSTC++ Q EN+ V +S+L     FG       LA  FP  N       EG  H+     + D EGFF+A
Sbjct:  121 LLDAAAAPGSKTTQIAALMNNQGMLVANEYSSSRLKVLSANIQRCGVTNVGMTHFDAKVFGQWLPETFD--AILLDAPCSGEGTVRKDEDAL----------RNWSIESIDEIAAVQQGLLESAFHALKPGGV--LVYSTCTLSQQENQAVCQSLLE---KFGDALTLDSLADLFP--NAEQACTPEGYLHV--WPQIFDSEGFFVA 306          
BLAST of FC904699 vs. ExPASy Swiss-Prot
Match: RSMF_SHELP (Ribosomal RNA small subunit methyltransferase F OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=rsmF PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.075e-14
Identity = 71/215 (33.02%), Postives = 105/215 (48.84%), Query Frame = 1
Query:  163 VLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHA-LSFPGVERVVYSTCSIHQVENEDV---IKSVLPIAMSFGFQLATSFPQWNCRGLPVFEGSEHLLRTDP-VEDKEGFFIALFVKGNIIDRS 792
            +LD  SAPG+KT  LAA+M  +G +VA E +  RV+ L   ++  GA+N+ + H D          +    AILLD  C G GT  +  D L          D +E+E    +++ Q+  +  A L+      +VYSTC++++ EN+DV   +K+    A+ F   LA  FP     G      SE  L   P + D EGFFIA   K   + R+
Sbjct:  118 LLDMASAPGSKTTQLAAMMNNQGLLVANEYSSSRVKVLHANVQRMGASNLALTHFDARVFGKY--LFESFDAILLDAPCGGEGTVRKDPDAL-------KHWDESEIE---AIASVQRDLIESAFLALKPGGSLVYSTCTLNRRENQDVCLHLKATYGDAVQFE-SLAGLFP-----GAEKASTSEGFLHVWPQIFDSEGFFIAKLTKIAAVPRN 314          
The following BLAST results are available for this feature:
BLAST of FC904699 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 94
Match NameE-valueIdentityDescription
NSUN5_MOUSE6.688e-4144.23Putative methyltransferase NSUN5 OS=Mus musculus G... [more]
NSUN5_HUMAN8.735e-4145.77Putative methyltransferase NSUN5 OS=Homo sapiens G... [more]
YEY6_SCHPO1.351e-3342.72Putative methyltransferase C2C4.06c OS=Schizosacch... [more]
NSN5C_HUMAN1.950e-3240.87Putative methyltransferase NSUN5C OS=Homo sapiens ... [more]
NSN5B_HUMAN2.553e-2441.18NOL1/NOP2/Sun domain family member 5B OS=Homo sapi... [more]
YNC2_YEAST6.289e-2334.63Uncharacterized protein YNL022C OS=Saccharomyces c... [more]
RSMF_SHEPA2.559e-1634.91Ribosomal RNA small subunit methyltransferase F OS... [more]
RSMF_SHESH1.270e-1533.49Ribosomal RNA small subunit methyltransferase F OS... [more]
RSMF_AERS43.695e-1534.78Ribosomal RNA small subunit methyltransferase F OS... [more]
RSMF_SHELP1.075e-1433.02Ribosomal RNA small subunit methyltransferase F OS... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA22BC09RM1 IVIA1 Citrus clementina cDNA clone IC0AAA22BC09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC904699 ID=FC904699; Name=FC904699; organism=Citrus clementina; type=EST; length=879bp
TAGTTTGTTAAATAGAAGTTTTTGATTCACAGCAGATTACTATGTTTTAG
CTGGATGATTATATGATTTTTCCCCCCTTTCCAGACTGACCTGATTTCCA
TGAGATTTCTTATTGAGTTCCTTGTTTTTATGTCTTCATGTTCTGTTTCA
ATTTTTGTGAAGGTTCTTGATGCCTGTTCAGCTCCTGGAAACAAAACTGT
GCACCTAGCTGCTCTTATGAAAGGAAAAGGAAAGATTGTAGCATGTGAGC
TTAATAAGGAAAGGGTTAGACGTCTCAAAGACACCATTAAGCTCTCTGGT
GCTGCTAATATTGAAGTCCTGCATGGGGACTTTTTGAACTTAGACCCGAA
AGATCCTGCATACTCTGAGGTCCGTGCCATTCTCTTAGATCCATCTTGCT
CTGGATCTGGGACTGCAGCTGAGAGGTTAGACCATCTACTCCCGTCACAT
GCTTCAGGTCATACTGCTGATCCTACTGAAATGGAAAGACTGAATAAACT
TTCAGCTTTCCAAAAGAAGGCATTGCGACATGCATTATCTTTTCCTGGAG
TTGAGAGAGTTGTGTACAGCACCTGCTCCATCCACCAAGTTGAAAATGAA
GATGTCATCAAATCTGTCCTGCCTATTGCTATGTCCTTTGGCTTTCAATT
GGCAACCTCTTTCCCCCAATGGAATTGCCGAGGCCTCCCAGTTTTTGAAG
GCTCTGAGCATTTACTTCGAACCGATCCAGTGGAAGACAAAGAAGGCTTT
TTTATAGCTCTATTTGTTAAGGGTAATATCATCGATCGCTCCAAAAATCC
CACTATGCCAAGCAGCTATNATAGCAAATAAACAGGTAACCGAGGAGCAC
GAGAAACATTCAGATAAAAGCTGGATTTT
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