FC909980

Overview
NameFC909980
Unique NameFC909980
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length864
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC909980 vs. ExPASy Swiss-Prot
Match: Y5880_ARATH (BTB/POZ domain-containing protein At5g48800 OS=Arabidopsis thaliana GN=At5g48800 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.194e-16
Identity = 54/143 (37.76%), Postives = 80/143 (55.94%), Query Frame = 2
Query:  212 TDVLIRVQGTCFLLHRDPLTSRSTYLKRQLTDHKELTLAPP--LNIT--AETFSLVAEFCYGTRIAITPFNVAALRTAAELLQMTEANCDGDENLKQLTETFFRRIVTVNKEYALIVFRSSLALLPEAETTAFLVSRCIEALS 628
            +D+ I V G  F LH+ PL SRS  ++R + +H++  ++    LN+   AETF L A+FCYG    IT  NVA L   ++ L+MTE      +NL   TE +   IV  N E  + V + S  LLP A+    ++ RCI+A++
Sbjct:   43 SDITIEVNGGNFALHKFPLVSRSGRIRRIVAEHRDSDISKVELLNLPGGAETFELAAKFCYGINFEITSSNVAQLFCVSDYLEMTEEY--SKDNLASRTEEYLESIVCKNLEMCVQVLKQSEILLPLADELN-IIGRCIDAIA 182          
BLAST of FC909980 vs. ExPASy Swiss-Prot
Match: RPT2_ARATH (Root phototropism protein 2 OS=Arabidopsis thaliana GN=RPT2 PE=1 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.603e-15
Identity = 61/210 (29.05%), Postives = 97/210 (46.19%), Query Frame = 2
Query:  188 WTLANGCKTDVLIRVQGTCFLLHRDPLTSRSTYLKRQLTDHKELTLAPPLNIT-----AETFSLVAEFCYGTRIAITPFNVAALRTAAELLQMTEANCDGDENLKQLTETFFRRIVTVNKEYALIVFRSSLALLPEAETTAFLVSRCIEALSLTDEGYGVVEL-------FEEVVRLGAEDFKLVAESMNQRFTSHDVLYEIVDLYLQKN 781
            W  +    TDV++ V    F LH+  L ++S Y+++ + + K+  +   +N++      E F   A+FCYG    IT  NVAAL  AAE LQMT+  C  D NL   T+ F  ++   +   A++V +S   LLP +     +V RC++ +        +           EE+  L  + F  V  SM QR      L   +  Y +K+
Sbjct:   24 WVFSQDIPTDVVVEVGEANFSLHKFMLVAKSNYIRKLIMESKDSDVTR-INLSDIPGGPEIFEKAAKFCYGVNFEITVQNVAALHCAAEFLQMTDKYC--DNNLAGRTQDFLSQVALSSLSGAIVVLKSCEILLPISRDLG-IVRRCVDVVGAKACNEAMFPCRTPPNWWTEELCILDVDFFSDVVSSMKQRGVKPSSLASAIITYTEKS 229          
BLAST of FC909980 vs. ExPASy Swiss-Prot
Match: Y1044_ARATH (BTB/POZ domain-containing protein At1g30440 OS=Arabidopsis thaliana GN=At1g30440 PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 2.734e-15
Identity = 60/169 (35.50%), Postives = 91/169 (53.85%), Query Frame = 2
Query:  188 WTLANGCKTDVLIRVQGTCFLLHRDPLTSRSTYLKRQLT------DHKELTLAPPLNITAETFSLVAEFCYGTRIAITPFNVAALRTAAELLQMTEANCDGDENLKQLTETFFRRIVTVNKEYALIVFRSSLALLPEAETTAFLVSRCIEALSL---TDE---GYGVVE 658
            W    G  +D+++ V    F LH+ PL SRS  ++R++       D K L     L    +TF LVA+FCYG ++ +T  NV  LR AAE L+MTE +  G+ NL   TETFF ++V  + + ++    S   +L  A+    +  +CIE+L++   TD    G+ VVE
Sbjct:   20 WFCTTGLPSDIVVEVGEMSFHLHKFPLLSRSGVMERRIAEASKEGDDKCLIEISDLPGGDKTFELVAKFCYGVKLELTASNVVYLRCAAEHLEMTEEH--GEGNLISQTETFFNQVVLKSWKDSIKALHSCDEVLEYADELN-ITKKCIESLAMRASTDPNLFGWPVVE 185          
BLAST of FC909980 vs. ExPASy Swiss-Prot
Match: RPT3_ARATH (Root phototropism protein 3 OS=Arabidopsis thaliana GN=RPT3 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.342e-13
Identity = 49/153 (32.03%), Postives = 83/153 (54.25%), Query Frame = 2
Query:  182 KNWTLANGCKTDVLIRVQGTCFLLHRDPLTSRSTYLKRQLTDHKE----LTLAPPLNITAETFSLVAEFCYGTRIAITPFNVAALRTAAELLQMTEANCDGDENLKQLTETFFRRIVTVNKEYALIVFRSSLALLPEAETTAFLVSRCIEALS 628
            ++W +A    +D+L+++    F LH+ PL SRS  + R + + ++    + +   L    E F L ++FCYG  + +T  N++ LR AAE L+MTE   +G  NL   TE F   +V  +   +++V +S   L P AE    +V RC E+++
Sbjct:   43 QSWFVATDIPSDLLVKIGDMNFHLHKYPLLSRSGKMNRLIYESRDPDPTILILDDLPGGPEAFELASKFCYGVPVDLTATNISGLRCAAEYLEMTEDLEEG--NLIFKTEAFLSYVVLSSWRDSILVLKSCEKLSPWAENLQ-IVRRCSESIA 192          
BLAST of FC909980 vs. ExPASy Swiss-Prot
Match: NPH3_ORYSJ (Coleoptile phototropism protein 1 OS=Oryza sativa subsp. japonica GN=CPT1 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.834e-11
Identity = 51/162 (31.48%), Postives = 81/162 (50.00%), Query Frame = 2
Query:  182 KNWTLANGCKTDVLIRVQGTCFLLHRDPLTSRSTYLKRQL-----TDHKELTLAPPLNIT--------AETFSLVAEFCYGTRIAITPFNVAALRTAAELLQMTEANCDGDENLKQLTETFFRRIVTVNKEYALIVFRSSLALLPEAETTAFLVSRCIEALS 628
            ++W + +   +D+L++V    F LH+ P+ SRS  + R +      D  E   A  + +         A +F L A F YG  + +T  N++ LR AAE L+MTE   +G  NL   TE F   +V  +   ++ V +S  AL P AE    +V RC E+++
Sbjct:   41 RSWYVNSDIPSDLLVKVGDVNFYLHKYPMISRSGRMSRAVYESSAADEAEADAAAAVAVVEMGDLPGGAGSFELAARFSYGMAVDLTAANISGLRCAAEYLEMTEEMEEG--NLIFKTEAFLSYVVLSSWRDSIAVLKSCEALSPWAENLQ-IVRRCSESIA 199          
The following BLAST results are available for this feature:
BLAST of FC909980 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
Y5880_ARATH7.194e-1637.76BTB/POZ domain-containing protein At5g48800 OS=Ara... [more]
RPT2_ARATH1.603e-1529.05Root phototropism protein 2 OS=Arabidopsis thalian... [more]
Y1044_ARATH2.734e-1535.50BTB/POZ domain-containing protein At1g30440 OS=Ara... [more]
RPT3_ARATH3.342e-1332.03Root phototropism protein 3 OS=Arabidopsis thalian... [more]
NPH3_ORYSJ1.834e-1131.48Coleoptile phototropism protein 1 OS=Oryza sativa ... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA31CD09RM1 IVIA1 Citrus clementina cDNA clone IC0AAA31CD09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC909980 ID=FC909980; Name=FC909980; organism=Citrus clementina; type=EST; length=864bp
AACAGCATCATTGGAAGCCGAAAGGCCTTGAAGAAGCGTGAAATCTCTTC
AAAGAAAAGAAAAAACAATGAAGAGTTGGGGAAATTTAGGGGTTGTTGAC
ACTATCTATGAAGAAGAATATGAATGCTCTTCTCCTTCGCTCGCCCCAAG
TCCCTCCTCTTCTCCTCCAAATTTCCATTCCAAAAATTGGACACTGGCAA
ATGGGTGCAAGACGGACGTGTTGATACGAGTCCAGGGAACATGTTTCCTT
CTGCACCGGGATCCTCTGACATCAAGGAGCACGTATTTAAAACGGCAACT
AACGGACCACAAGGAGTTAACTCTCGCTCCACCGTTGAACATAACGGCCG
AAACCTTCTCTTTAGTAGCAGAATTCTGTTACGGGACACGCATTGCCATA
ACGCCGTTCAACGTGGCGGCACTTAGAACGGCAGCGGAGTTACTCCAAAT
GACAGAAGCTAACTGTGACGGCGACGAGAATTTAAAGCAGCTGACGGAAA
CATTCTTCCGTCGGATTGTCACCGTTAACAAAGAGTACGCGTTGATAGTT
TTCCGCTCGAGTCTCGCTCTGCTTCCCGAAGCAGAAACGACAGCGTTTCT
TGTGAGCAGATGCATTGAGGCTTTAAGTTTGACGGATGAGGGTTATGGGG
TCGTTGAGCTATTCGAAGAAGTTGTAAGGTTGGGCGCCGAAGATTTTAAG
CTCGTCGCCGAGTCCATGAACCAACGGTTTACGAGCCACGATGTGCTTTA
CGAAATTGTCGATCTATATCTTCAGAAAAACAGTAGTGGGGAAATGACTG
AGGAACAGAAAGTAGAGATATGCGATTCCATTGACTGTAACAAGCTCTCG
TCTGGATTCCTCTT
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