FC910038

Overview
NameFC910038
Unique NameFC910038
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length844
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC910038 vs. ExPASy Swiss-Prot
Match: RAV2_ARATH (AP2/ERF and B3 domain-containing transcription repressor RAV2 OS=Arabidopsis thaliana GN=RAV2 PE=2 SV=1)

HSP 1 Score: 300.442 bits (768), Expect = 8.000e-81
Identity = 166/259 (64.09%), Postives = 190/259 (73.36%), Query Frame = 3
Query:   81 MDGSCMDEXXXXXXXXXXPPITFPASIPPTKSPESLCRVGSGASSVILDSEAGVEAESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEEEAARAYDIAAQRFRGRDAVTNFKQMSCAGTSSDEGDIEMAFLSSHSKSEIVDMLRKHTYNDELEQSKRN---YGLDANGKRVIKHGEGDGVATAFGSDRVLKARDQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQSGS--TSKGLLLNFEDVTGKVWRFR 842
            MD SC+DE                 S PP  +   L R+GSG SSV+LD E G+E ESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNE+EEAAR+YDIAA RFRGRDAV NFK +       ++GD  +AFL +HSK+EIVDMLRKHTY DELEQ+ +      +DANGKR       +G +T   +D+VLK R+ LFEKAVTPSDVGKLNRLVIPKQHAEKHFPL S S   +KG+L+NFEDV GKVWRFR
Sbjct:    1 MDSSCIDEISSSTSESFSATTAKKLSPPPAAALR-LYRMGSGGSSVVLDPENGLETESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEQEEAARSYDIAACRFRGRDAVVNFKNV------LEDGD--LAFLEAHSKAEIVDMLRKHTYADELEQNNKRQLFLSVDANGKR-------NGSSTT-QNDKVLKTREVLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLPSPSPAVTKGVLINFEDVNGKVWRFR 242          
BLAST of FC910038 vs. ExPASy Swiss-Prot
Match: RAVL1_ARATH (AP2/ERF and B3 domain-containing transcription repressor TEM1 OS=Arabidopsis thaliana GN=TEM1 PE=1 SV=1)

HSP 1 Score: 298.13 bits (762), Expect = 3.970e-80
Identity = 161/238 (67.65%), Postives = 183/238 (76.89%), Query Frame = 3
Query:  156 SIPPTKSPESLCRVGSGASSVILDSEAGVEAESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEEEAARAYDIAAQRFRGRDAVTNFKQMSCAGTSSDEGDIEMAFLSSHSKSEIVDMLRKHTYNDELEQSKRNYGLDANGKRVIKHGEGDGVATA-FGSDRVLKARDQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQSGST--------SKGLLLNFEDVTGKVWRFR 842
            S PP  S   L R+GSG SSV+LDSE GVE ESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEEEAA +YDIA +RFRGRDAVTNFK      +  D  D E AFL +HSK+EIVDMLRKHTY DE EQS+R + ++ +GKR        G+ TA +G+D VL+AR+ LFEK VTPSDVGKLNRLVIPKQHAEKHFPL + +T        +KG+L+N ED TGKVWRFR
Sbjct:   33 SSPPATSMR-LYRMGSGGSSVVLDSENGVETESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEEEAASSYDIAVRRFRGRDAVTNFK------SQVDGNDAESAFLDAHSKAEIVDMLRKHTYADEFEQSRRKF-VNGDGKR-------SGLETATYGNDAVLRAREVLFEKTVTPSDVGKLNRLVIPKQHAEKHFPLPAMTTAMGMNPSPTKGVLINLEDRTGKVWRFR 255          
BLAST of FC910038 vs. ExPASy Swiss-Prot
Match: RAV1_ARATH (AP2/ERF and B3 domain-containing transcription factor RAV1 OS=Arabidopsis thaliana GN=RAV1 PE=1 SV=1)

HSP 1 Score: 292.352 bits (747), Expect = 2.179e-78
Identity = 164/257 (63.81%), Postives = 185/257 (71.98%), Query Frame = 3
Query:   81 MDGSCMDEXXXXXXXXXXPPITFPASIPPTKSPESLCRVGSGASSVILDSEAGVEAESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEEEAARAYDIAAQRFRGRDAVTNFKQMSCAGTSSDEGDIEMAFLSSHSKSEIVDMLRKHTYNDELEQSKRNYGLDANGKRVIKHG--EGDGVATAFGSDRVLKARDQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQSGSTS-KGLLLNFEDVTGKVWRFR 842
            M+ S +DE           P   PA      S  +L R+GSG SSV+LDSE GVEAESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEE+EAARAYD+A  RFR RDAVTNFK +       DE +++  FL+SHSKSEIVDMLRKHTYN+ELEQSKR    + N  R +       DGV+T        ++ + LFEKAVTPSDVGKLNRLVIPK HAEKHFPL S + S KG+LLNFEDV GKVWRFR
Sbjct:    1 MESSSVDESTTSTGSICETPAITPAK---KSSVGNLYRMGSG-SSVVLDSENGVEAESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDVAVHRFRRRDAVTNFKDV-----KMDEDEVD--FLNSHSKSEIVDMLRKHTYNEELEQSKRRRNGNGNMTRTLLTSGLSNDGVSTT-----GFRSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFR 241          
BLAST of FC910038 vs. ExPASy Swiss-Prot
Match: RAVL4_ARATH (AP2/ERF and B3 domain-containing transcription factor ARF14 OS=Arabidopsis thaliana GN=ARF14 PE=2 SV=1)

HSP 1 Score: 273.478 bits (698), Expect = 1.047e-72
Identity = 159/240 (66.25%), Postives = 177/240 (73.75%), Query Frame = 3
Query:  156 SIPPTKS--PESLC-RVGSGASSVILDSEAGVE----AESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEEEAARAYDIAAQRFRGRDAVTNFKQMSCAGTSSDEGDIEMAFLSSHSKSEIVDMLRKHTYNDELEQSKRNYGLDANGKRVIKHGEGDGVA-TAFGSDRVLKARDQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQSGSTS---KGLLLNFEDVTGKVWRFR 842
            SIP  KS  P SL  R+GSG +SV+LDSE GVE    AESRKLPSS++KGVVPQPNGRWGAQIYEKHQRVWLGTFNEE+EAARAYD+AA RFRGRDAVTNFK      T+ +E   E+ FL++HSKSEIVDMLRKHTY +EL+Q KRN   D NGK          V  T F      K  + LFEK VTPSDVGKLNRLVIPK  AEKHFPL  G+ +   KG+LLNFEDV GKVWRFR
Sbjct:   16 SIPARKSSSPASLLYRMGSG-TSVVLDSENGVEVEVEAESRKLPSSRFKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDVAAHRFRGRDAVTNFKD-----TTFEE---EVEFLNAHSKSEIVDMLRKHTYKEELDQRKRN--RDGNGKETTAFALASMVVMTGF------KTAELLFEKTVTPSDVGKLNRLVIPKHQAEKHFPLPLGNNNVSVKGMLLNFEDVNGKVWRFR 238          
BLAST of FC910038 vs. ExPASy Swiss-Prot
Match: Y1934_ORYSJ (AP2/ERF and B3 domain-containing protein Os01g0693400 OS=Oryza sativa subsp. japonica GN=Os01g0693400 PE=2 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 3.855e-67
Identity = 137/239 (57.32%), Postives = 165/239 (69.04%), Query Frame = 3
Query:  192 RVGSGASSVILDSEAGVEAESR------------------KLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEEEAARAYDIAAQRFRGRDAVTNFKQMSCAGTSSDEGDIEMAFLSSHSKSEIVDMLRKHTYNDELEQSKRNYGLDANGKRVIKHGEGDG-VATAFGSDRVLKARDQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQ---SGSTSKGLLLNFEDVTGKVWRFR 842
            R+GSGAS+V+  +E G EA+S                   KLPSSK+KGVVPQPNGRWGAQIYE+HQRVWLGTF  E++AARAYD+AAQRFRGRDAVTNF+ ++    +  +   E+ FL++ SK+E+VDMLRKHTY DEL QSKR +               +G +++         ARD LF+K VTPSDVGKLNRLVIPKQHAEKHFPLQ   +G  SKG+LLNFED  GKVWRFR
Sbjct:   36 RMGSGASAVVDAAEPGAEADSGSGGRVCGGGGGGAGGAGGKLPSSKFKGVVPQPNGRWGAQIYERHQRVWLGTFAGEDDAARAYDVAAQRFRGRDAVTNFRPLA---EADPDAAAELRFLATRSKAEVVDMLRKHTYFDELAQSKRTFAASTPSAATTTASLSNGHLSSPRSPFAPAAARDHLFDKTVTPSDVGKLNRLVIPKQHAEKHFPLQLPSAGGESKGVLLNFEDAAGKVWRFR 271          
BLAST of FC910038 vs. ExPASy Swiss-Prot
Match: Y5498_ORYSJ (AP2/ERF and B3 domain-containing protein Os05g0549800 OS=Oryza sativa subsp. japonica GN=Os05g0549800 PE=2 SV=1)

HSP 1 Score: 252.677 bits (644), Expect = 1.913e-66
Identity = 141/248 (56.85%), Postives = 167/248 (67.34%), Query Frame = 3
Query:  180 ESLCRVGSGASSVILDSEAGVEAESR---------KLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEEEAARAYDIAAQRFRGRDAVTNFKQMSCAGTSSDEGDIEMAFLSSHSKSEIVDMLRKHTYNDELEQSKRNYGLDANGKRVIKHGEGDGVATAFGSDRVLKARDQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQ------------------SGSTSKGLLLNFEDVTGKVWRFR 842
            ++L RVGSGAS+V+  +E G EA+S          KLPSSKYKGVVPQPNGRWGAQIYE+HQRVWLGTF  E EAARAYD+AAQRFRGRDAVTNF+ ++    S  E  +E+ FL+S SK+E+VDMLRKHTY +EL Q+KR +   A      KH      +++        AR+ LF+K VTPSDVGKLNRLVIPKQHAEKHFPLQ                   G   KG+LLNFED  GKVW+FR
Sbjct:   28 KALQRVGSGASAVMDAAEPGAEADSGGERRGGGGGKLPSSKYKGVVPQPNGRWGAQIYERHQRVWLGTFTGEAEAARAYDVAAQRFRGRDAVTNFRPLA---ESDPEAAVELRFLASRSKAEVVDMLRKHTYLEELTQNKRAFA--AISPPPPKHPASSPTSSS-------AAREHLFDKTVTPSDVGKLNRLVIPKQHAEKHFPLQLPPPTTTSSVAAAADAAAGGGDCKGVLLNFEDAAGKVWKFR 263          
BLAST of FC910038 vs. ExPASy Swiss-Prot
Match: Y1410_ORYSJ (AP2/ERF and B3 domain-containing protein Os01g0141000 OS=Oryza sativa subsp. japonica GN=Os01g0141000 PE=2 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 9.516e-58
Identity = 124/221 (56.11%), Postives = 145/221 (65.61%), Query Frame = 3
Query:  207 ASSVILDSEAGVEAESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEEEAARAYDIAAQRFRGRDAVTNFKQMSCAGTSSDEGDIEMAFLSSHSKSEIVDMLRKHTYNDELEQSKRNYGLDANGKRVIKHGEGDGVATAFGSDRVLKARDQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQ---------SGSTSKGLLLNFEDVTGKVWRFR 842
            A  V+    A   A+     SS+YKGVVPQPNGRWGAQIYE+H RVWLGTF +EE AARAYD+AA R+RGRDA TNF   + +         E+AFL++HSK+EIVDMLRKHTY DEL Q              ++ G G G   A        AR+ LFEKAVTPSDVGKLNRLV+PKQHAEKHFPL+         + +T KG+LLNFED  GKVWRFR
Sbjct:   50 ADEVVTSRPAAAAAQQ----SSRYKGVVPQPNGRWGAQIYERHARVWLGTFPDEEAAARAYDVAALRYRGRDAATNFPGAAASAA-------ELAFLAAHSKAEIVDMLRKHTYADELRQG-------------LRRGRGMG---ARAQPTPSWAREPLFEKAVTPSDVGKLNRLVVPKQHAEKHFPLRRAASSDSASAAATGKGVLLNFEDGEGKVWRFR 243          
BLAST of FC910038 vs. ExPASy Swiss-Prot
Match: Y1407_ORYSJ (Putative AP2/ERF and B3 domain-containing protein Os01g0140700 OS=Oryza sativa subsp. japonica GN=Os01g0140700 PE=3 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.795e-56
Identity = 129/249 (51.81%), Postives = 149/249 (59.84%), Query Frame = 3
Query:  189 CRVGSGASSVILDSEAGVEAESRKL--------------------------PSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEEEAARAYDIAAQRFRGRDAVTNFKQMSCAGTSSDEGDIEMAFLSSHSKSEIVDMLRKHTYNDELEQSKRNYGLDANGKRVIKHGEGDGVATAFGSDRVLKARDQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPL-----QSGSTSKGLLLNFEDVTGKVWRFR 842
            C  GSG SS   DS+   E E                              PSS+YKGVVPQPNGRWGAQIYE+H RVWLGTF +EE AARAYD+AA RFRGRDAVTN +  +  G S+ E    +AFL++HSK+E+VDMLRKHTY+DEL+Q  R       G R                     AR+ LFEKAVTPSDVGKLNRLV+PKQ AE+HFP       S +  KG+LLNFED  GKVWRFR
Sbjct:   12 CNSGSGGSSSTTDSKQEEEEEEELAAMEEDELIHVVQAAELRLPSSTTATRPSSRYKGVVPQPNGRWGAQIYERHARVWLGTFPDEEAAARAYDVAALRFRGRDAVTN-RAPAAEGASAGE----LAFLAAHSKAEVVDMLRKHTYDDELQQGLRR------GSRA--------------QPTPRWAREPLFEKAVTPSDVGKLNRLVVPKQQAERHFPFPLRRHSSDAAGKGVLLNFEDGDGKVWRFR 235          
BLAST of FC910038 vs. ExPASy Swiss-Prot
Match: RAVL3_ARATH (AP2/ERF and B3 domain-containing transcription factor At1g51120 OS=Arabidopsis thaliana GN=At1g51120 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.811e-24
Identity = 77/203 (37.93%), Postives = 108/203 (53.20%), Query Frame = 3
Query:  267 SSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEEEAARAYDIAAQRFRGRDAVTNFKQMSCAGTSSDEGDIEMAFLSSHSKSEIVDMLRKHTYNDEL---EQSKRNYGLDANGKRVIKHGEGDGVATAFGSDRVLKARDQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQSG-----STSKG---LLLNFEDVTGKVWRFR 842
            ++K+KGVV Q NG WGAQIY  H+R+WLGTF    EAA AYD A+ + R  DA  + +    +  +  E D +  + +    + I D   +H + D L    Q   N  +    K+V+  GEG   +    S        QLF+K +TPSDVGKLNRLVIPK++A K+ P  S       TS+G   + + F D   + W+FR
Sbjct:   44 TTKFKGVVQQQNGHWGAQIYADHRRIWLGTFKSAHEAAAAYDSASIKLRSFDA-NSHRNFPWSDFTLHEPDFQECYTTEAVLNMIRDGSYQHKFRDFLRIRSQIVANINI-VGSKQVLGGGEGGQESNKCFS------CTQLFQKELTPSDVGKLNRLVIPKKYAVKYMPFISDDQSEKETSEGVEDVEVVFYDRAMRQWKFR 238          
BLAST of FC910038 vs. ExPASy Swiss-Prot
Match: RAVL2_ARATH (AP2/ERF and B3 domain-containing transcription factor At1g50680 OS=Arabidopsis thaliana GN=At1g50680 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.533e-23
Identity = 74/202 (36.63%), Postives = 106/202 (52.48%), Query Frame = 3
Query:  273 KYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEEEAARAYDIAAQRFRGRDAVTNFKQMSCAGTSSDEGDIEMAFLSSHSKSEIVDMLRKHTYNDELE-QSKRNYGLDANGKRVIKHGEGDGVATAFGSDRVLKARDQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQSGSTS-----------KGLLLNFEDVTGKVWRFR 842
            KYKGVV Q NG WGAQIY  H+R+WLGTF   +EAA AYD A+ + R  DA  + +    +  + +E D +  + +    + I D   +H + D L  +S+    ++  G    K   G+       SD+      QLF+K +TPSDVGKLNRLVIPK++A K+ P  S   S           + + + F D   + W+FR
Sbjct:   27 KYKGVVQQQNGHWGAQIYADHKRIWLGTFKSADEAATAYDSASIKLRSFDA-NSHRNFPWSTITLNEPDFQNCYTTETVLNMIRDGSYQHKFRDFLRIRSQIVASINIGGP---KQARGE---VNQESDKCFSC-TQLFQKELTPSDVGKLNRLVIPKKYAVKYMPFISADQSEKEEGEIVGSVEDVEVVFYDRAMRQWKFR 220          
The following BLAST results are available for this feature:
BLAST of FC910038 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
RAV2_ARATH8.000e-8164.09AP2/ERF and B3 domain-containing transcription rep... [more]
RAVL1_ARATH3.970e-8067.65AP2/ERF and B3 domain-containing transcription rep... [more]
RAV1_ARATH2.179e-7863.81AP2/ERF and B3 domain-containing transcription fac... [more]
RAVL4_ARATH1.047e-7266.25AP2/ERF and B3 domain-containing transcription fac... [more]
Y1934_ORYSJ3.855e-6757.32AP2/ERF and B3 domain-containing protein Os01g0693... [more]
Y5498_ORYSJ1.913e-6656.85AP2/ERF and B3 domain-containing protein Os05g0549... [more]
Y1410_ORYSJ9.516e-5856.11AP2/ERF and B3 domain-containing protein Os01g0141... [more]
Y1407_ORYSJ1.795e-5651.81Putative AP2/ERF and B3 domain-containing protein ... [more]
RAVL3_ARATH1.811e-2437.93AP2/ERF and B3 domain-containing transcription fac... [more]
RAVL2_ARATH1.533e-2336.63AP2/ERF and B3 domain-containing transcription fac... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA22CB02RM1 IVIA1 Citrus clementina cDNA clone IC0AAA22CB02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC910038 ID=FC910038; Name=FC910038; organism=Citrus clementina; type=EST; length=844bp
ACACAATTCAGCATCTCTCTCTTTCTTTCTTGTACCAGAACCTCTTGTAG
ACACACATAACACACATGAAAAGAGAAGAAATGGACGGAAGTTGCATGGA
CGAAAGCACGACAACTGATTCAGCATCAACATCCCCGCCAATAACTTTCC
CTGCGAGCATCCCGCCGACCAAGTCGCCGGAGAGTCTTTGCCGAGTCGGC
AGCGGAGCCTCCAGCGTGATTCTCGACTCGGAAGCCGGCGTGGAGGCCGA
GTCGAGGAAGCTCCCGTCTTCCAAATACAAAGGGGTGGTCCCACAGCCGA
ATGGGAGGTGGGGCGCCCAGATATACGAGAAGCACCAAAGGGTCTGGCTC
GGCACCTTCAACGAGGAAGAGGAAGCTGCCAGGGCCTACGATATCGCTGC
GCAGCGTTTCCGCGGACGCGATGCCGTCACAAACTTCAAGCAAATGTCTT
GTGCTGGAACGTCCTCCGACGAGGGTGATATCGAAATGGCGTTCTTGAGC
TCCCACTCCAAGTCCGAGATCGTCGATATGCTGAGGAAGCACACTTACAA
CGACGAGCTCGAGCAGAGCAAAAGAAACTACGGCCTCGATGCCAACGGCA
AGCGTGTAATCAAACACGGGGAAGGTGATGGTGTTGCCACTGCCTTCGGT
TCGGACCGGGTCCTTAAAGCGCGTGACCAGCTTTTTGAAAAGGCCGTTAC
CCCGAGTGACGTGGGGAAGCTGAACCGGCTCGTGATACCCAAGCAGCACG
CGGAGAAGCACTTCCCTTTACAGAGCGGAAGCACTTCCAAGGGACTGCTC
TTGAACTTTGAGGATGTCACCGGCAAAGTTTGGAGGTTTAGGTA
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