FC910039

Overview
NameFC910039
Unique NameFC910039
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length750
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC910039 vs. ExPASy Swiss-Prot
Match: NDUS2_NEUCR (NADH-ubiquinone oxidoreductase 49 kDa subunit, mitochondrial OS=Neurospora crassa GN=nuo-49 PE=1 SV=2)

HSP 1 Score: 297.745 bits (761), Expect = 4.337e-80
Identity = 159/237 (67.09%), Postives = 175/237 (73.84%), Query Frame = 1
Query:   58 GGSPQRLCLRQRPSPVPS--SIRCLSTTPARRLAAPVPEPSQAFNNTPAMPQQGTRLIPVDPSFGHPVDQSEPQHMNLARDKGDSPEE----RKIRHYTVNFGPQHPAAHGVLRLILELNGEEIVRADPHVGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMTNEQCFSLAVEKLLNIEIPERAKWIRTLFGEITRILNHLMSVLSHAMDVGALTPFLWGFEEREKLMEFYERVSG 750
            G + +R C+RQ  +   +  S R  S +  RR A P  E             QGTRL+P    F    D    + +         P++    RK+RHYTVNFGPQHPAAHGVLRLILEL GEEIVRADPHVGLLHRGTEKL EY+TYLQALPYFDRLDYVSMMTNEQCF+LAVEKLLN+EIPERAKWIRT+F EITRILNHLMSVLSHAMDVGALTPFLWGFEEREKLMEFYERVSG
Sbjct:   10 GRNAKRHCMRQSTTIAHNLNSTRAFSASALRRYAEPSYEG------------QGTRLVPTGDDFAPNNDLYGLEALKADGAPRVPPQDHILARKVRHYTVNFGPQHPAAHGVLRLILELKGEEIVRADPHVGLLHRGTEKLCEYRTYLQALPYFDRLDYVSMMTNEQCFALAVEKLLNVEIPERAKWIRTMFAEITRILNHLMSVLSHAMDVGALTPFLWGFEEREKLMEFYERVSG 234          
BLAST of FC910039 vs. ExPASy Swiss-Prot
Match: NDUS2_RECAM (NADH-ubiquinone oxidoreductase 49 kDa subunit OS=Reclinomonas americana GN=NAD7 PE=3 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 8.778e-65
Identity = 115/145 (79.31%), Postives = 133/145 (91.72%), Query Frame = 1
Query:  316 RKIRHYTVNFGPQHPAAHGVLRLILELNGEEIVRADPHVGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMTNEQCFSLAVEKLLNIEIPERAKWIRTLFGEITRILNHLMSVLSHAMDVGALTPFLWGFEEREKLMEFYERVSG 750
            +K++++T+NFGPQHPAAHGVLRL+LELNGE + RADPH+GLLHRGTEKLIEYK YLQALPYFDRLDYVSMM  E  +SLAVEKLL  E+P+RA++IR LF EITRILNHLM+V +HA+DVGA+TPFLWGFEEREKLMEFYERVSG
Sbjct:    8 KKLKNFTMNFGPQHPAAHGVLRLVLELNGEVVNRADPHIGLLHRGTEKLIEYKNYLQALPYFDRLDYVSMMAQEHAYSLAVEKLLGCEVPKRAQYIRVLFCEITRILNHLMAVTTHALDVGAMTPFLWGFEEREKLMEFYERVSG 152          
BLAST of FC910039 vs. ExPASy Swiss-Prot
Match: NDUS2_NEPOL (NADH-ubiquinone oxidoreductase 49 kDa subunit OS=Nephroselmis olivacea GN=NAD7 PE=3 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 8.778e-65
Identity = 114/145 (78.62%), Postives = 133/145 (91.72%), Query Frame = 1
Query:  316 RKIRHYTVNFGPQHPAAHGVLRLILELNGEEIVRADPHVGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMTNEQCFSLAVEKLLNIEIPERAKWIRTLFGEITRILNHLMSVLSHAMDVGALTPFLWGFEEREKLMEFYERVSG 750
            +K++++T+NFGPQHPAAHGVLRL+LELNGE + RADPH+GLLHRGTEKLIEYKTY QALPYFDRLDYVSMM  E  +SLAVEKLL+ E+PERA++IR LF EITRILNHL+++ +HAMDVGALTPFLW FEEREKL+EFYERVSG
Sbjct:   10 KKVKNFTLNFGPQHPAAHGVLRLVLELNGEVVARADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCQEHAYSLAVEKLLHCEVPERAQYIRVLFSEITRILNHLLALTTHAMDVGALTPFLWAFEEREKLIEFYERVSG 154          
BLAST of FC910039 vs. ExPASy Swiss-Prot
Match: NDUS2_MOUSE (NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial OS=Mus musculus GN=Ndufs2 PE=1 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 1.147e-64
Identity = 127/220 (57.73%), Postives = 155/220 (70.45%), Query Frame = 1
Query:  112 SIRCLSTTPARRLAAPVPEPSQAFNNTPAMPQQGTRLIPVDPSFGHPVD------QSEPQHMNLAR-DKGDSPEERKIRHYTVNFGPQHPAAHGVLRLILELNGEEIVRADPHVGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMTNEQCFSLAVEKLLNIEIPERAKWIRTLFGEITRILNHLMSVLSHAMDVGALTPFLWGFEEREKLMEFYERVSG 750
            ++RCL     R + APV  P       P+ P +G R    D  +             E  H      +  D  +E+ + + T+NFGPQHPAAHGVLRL+LEL+GE + + DPH+GLLHRGTEKLIEYKTYLQALPYFDRLDYVSMM NEQ +S+AVEKLLNI+ P RA+WIR LFGEITRILNH+M+V +HA+D+GA+TPF W FEEREK+ EFYERVSG
Sbjct:    6 ALRCL-----RGVGAPVLRPGSGIR-LPSQPSRGARQWQPDIEWAEQFSGAVMYPSKETAHWKPPPWNDVDILKEKAVTNMTLNFGPQHPAAHGVLRLVLELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSIAVEKLLNIQPPPRAQWIRVLFGEITRILNHIMAVTTHALDIGAMTPFFWMFEEREKMFEFYERVSG 219          
BLAST of FC910039 vs. ExPASy Swiss-Prot
Match: NDUS2_BOVIN (NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial OS=Bos taurus GN=NDUFS2 PE=1 SV=2)

HSP 1 Score: 244.202 bits (622), Expect = 5.690e-64
Identity = 111/150 (74.00%), Postives = 133/150 (88.67%), Query Frame = 1
Query:  301 DSPEERKIRHYTVNFGPQHPAAHGVLRLILELNGEEIVRADPHVGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMTNEQCFSLAVEKLLNIEIPERAKWIRTLFGEITRILNHLMSVLSHAMDVGALTPFLWGFEEREKLMEFYERVSG 750
            D P++  + + T+NFGPQHPAAHGVLRL++EL+GE + + DPH+GLLHRGTEKLIEYKTYLQALPYFDRLDYVSMM NEQ +SLAVEKLLNI+ P RA+WIR LFGEITR+LNH+M+V +HA+D+GA+TPF W FEEREK+ EFYERVSG
Sbjct:   70 DPPKDTLVSNLTLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIQPPPRAQWIRVLFGEITRLLNHIMAVTTHALDIGAMTPFFWMFEEREKMFEFYERVSG 219          
BLAST of FC910039 vs. ExPASy Swiss-Prot
Match: NDUS2_RAT (NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial OS=Rattus norvegicus GN=Ndufs2 PE=1 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 7.431e-64
Identity = 113/150 (75.33%), Postives = 133/150 (88.67%), Query Frame = 1
Query:  301 DSPEERKIRHYTVNFGPQHPAAHGVLRLILELNGEEIVRADPHVGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMTNEQCFSLAVEKLLNIEIPERAKWIRTLFGEITRILNHLMSVLSHAMDVGALTPFLWGFEEREKLMEFYERVSG 750
            D  +E+ + + T+NFGPQHPAAHGVLRL+LEL+GE + + DPH+GLLHRGTEKLIEYKTYLQALPYFDRLDYVSMM NEQ +SLAVEKLLNI+ P RA+WIR LFGEITRILNH+M+V +HA+D+GA+TPF W FEEREK+ EFYERVSG
Sbjct:   70 DVLKEKVVTNVTLNFGPQHPAAHGVLRLVLELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIQPPPRAQWIRVLFGEITRILNHIMAVTTHALDIGAMTPFFWMFEEREKMFEFYERVSG 219          
BLAST of FC910039 vs. ExPASy Swiss-Prot
Match: NDUS2_PANTR (NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial OS=Pan troglodytes GN=NDUFS2 PE=2 SV=1)

HSP 1 Score: 243.047 bits (619), Expect = 1.268e-63
Identity = 111/150 (74.00%), Postives = 133/150 (88.67%), Query Frame = 1
Query:  301 DSPEERKIRHYTVNFGPQHPAAHGVLRLILELNGEEIVRADPHVGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMTNEQCFSLAVEKLLNIEIPERAKWIRTLFGEITRILNHLMSVLSHAMDVGALTPFLWGFEEREKLMEFYERVSG 750
            D P++  +++ T+NFGPQHPAAHGVLRL++EL+GE + + DPH+GLLHRGTEKLIEYKTYLQALPYFDRLDYVSMM NEQ +SLAVEKLLNI  P RA+WIR LFGEITR+LNH+M+V +HA+D+GA+TPF W FEEREK+ EFYERVSG
Sbjct:   70 DPPKDTIVKNMTLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIRPPPRAQWIRVLFGEITRLLNHIMAVTTHALDLGAMTPFFWLFEEREKMFEFYERVSG 219          
BLAST of FC910039 vs. ExPASy Swiss-Prot
Match: NDUS2_HUMAN (NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial OS=Homo sapiens GN=NDUFS2 PE=1 SV=2)

HSP 1 Score: 243.047 bits (619), Expect = 1.268e-63
Identity = 111/150 (74.00%), Postives = 133/150 (88.67%), Query Frame = 1
Query:  301 DSPEERKIRHYTVNFGPQHPAAHGVLRLILELNGEEIVRADPHVGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMTNEQCFSLAVEKLLNIEIPERAKWIRTLFGEITRILNHLMSVLSHAMDVGALTPFLWGFEEREKLMEFYERVSG 750
            D P++  +++ T+NFGPQHPAAHGVLRL++EL+GE + + DPH+GLLHRGTEKLIEYKTYLQALPYFDRLDYVSMM NEQ +SLAVEKLLNI  P RA+WIR LFGEITR+LNH+M+V +HA+D+GA+TPF W FEEREK+ EFYERVSG
Sbjct:   70 DPPKDTIVKNITLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIRPPPRAQWIRVLFGEITRLLNHIMAVTTHALDLGAMTPFFWLFEEREKMFEFYERVSG 219          
BLAST of FC910039 vs. ExPASy Swiss-Prot
Match: NDUS2_GORGO (NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial OS=Gorilla gorilla gorilla GN=NDUFS2 PE=2 SV=1)

HSP 1 Score: 243.047 bits (619), Expect = 1.268e-63
Identity = 111/150 (74.00%), Postives = 133/150 (88.67%), Query Frame = 1
Query:  301 DSPEERKIRHYTVNFGPQHPAAHGVLRLILELNGEEIVRADPHVGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMTNEQCFSLAVEKLLNIEIPERAKWIRTLFGEITRILNHLMSVLSHAMDVGALTPFLWGFEEREKLMEFYERVSG 750
            D P++  +++ T+NFGPQHPAAHGVLRL++EL+GE + + DPH+GLLHRGTEKLIEYKTYLQALPYFDRLDYVSMM NEQ +SLAVEKLLNI  P RA+WIR LFGEITR+LNH+M+V +HA+D+GA+TPF W FEEREK+ EFYERVSG
Sbjct:   70 DPPKDTIVKNMTLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIRPPPRAQWIRVLFGEITRLLNHIMAVTTHALDLGAMTPFFWLFEEREKMFEFYERVSG 219          
BLAST of FC910039 vs. ExPASy Swiss-Prot
Match: NDUS2_ARATH (NADH-ubiquinone oxidoreductase 49 kDa subunit OS=Arabidopsis thaliana GN=NAD7 PE=1 SV=2)

HSP 1 Score: 242.276 bits (617), Expect = 2.162e-63
Identity = 113/146 (77.40%), Postives = 133/146 (91.10%), Query Frame = 1
Query:  313 ERKIRHYTVNFGPQHPAAHGVLRLILELNGEEIVRADPHVGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMTNEQCFSLAVEKLLNIEIPERAKWIRTLFGEITRILNHLMSVLSHAMDVGALTPFLWGFEEREKLMEFYERVSG 750
            +R+I+++T+NFGPQHPAAHGVLRL+LE+NGE + RA+PH+GLLHRGTEKLIEYKTYLQALPYFDR DYVSMM  E  +SLAVEKLLN E+P RA++IR LF EITRILNHL+++ +HAMDVGALTPFLW FEEREKL+EFYERVSG
Sbjct:    5 KRQIKNFTLNFGPQHPAAHGVLRLVLEMNGEVVERAEPHIGLLHRGTEKLIEYKTYLQALPYFDRSDYVSMMAQEHAYSLAVEKLLNCEVPLRAQYIRVLFCEITRILNHLLALTTHAMDVGALTPFLWAFEEREKLLEFYERVSG 150          
The following BLAST results are available for this feature:
BLAST of FC910039 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDUS2_NEUCR4.337e-8067.09NADH-ubiquinone oxidoreductase 49 kDa subunit, mit... [more]
NDUS2_RECAM8.778e-6579.31NADH-ubiquinone oxidoreductase 49 kDa subunit OS=R... [more]
NDUS2_NEPOL8.778e-6578.62NADH-ubiquinone oxidoreductase 49 kDa subunit OS=N... [more]
NDUS2_MOUSE1.147e-6457.73NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
NDUS2_BOVIN5.690e-6474.00NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
NDUS2_RAT7.431e-6475.33NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
NDUS2_PANTR1.268e-6374.00NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
NDUS2_HUMAN1.268e-6374.00NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
NDUS2_GORGO1.268e-6374.00NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
NDUS2_ARATH2.162e-6377.40NADH-ubiquinone oxidoreductase 49 kDa subunit OS=A... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA60BG11RM1 IVIA1 Citrus clementina cDNA clone IC0AAA60BG11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC910039 ID=FC910039; Name=FC910039; organism=Citrus clementina; type=EST; length=750bp
TCAAGCGCTGCCATCCCCTCCAGCATCATGGCAGCTTCCATCACCCGCAT
GGCCATGGGCGGCAGCCCCCAACGGCTATGCCTCCGCCAGCGACCCTCCC
CCGTCCCCTCTTCCATCCGCTGCCTCTCGACAACGCCTGCACGACGGCTA
GCAGCTCCCGTTCCAGAGCCCAGCCAGGCGTTCAACAACACCCCCGCCAT
GCCTCAGCAGGGCACACGCCTTATCCCAGTCGACCCGTCGTTCGGCCACC
CCGTTGATCAGAGCGAACCTCAGCACATGAACCTCGCGCGAGACAAGGGC
GACAGTCCGGAAGAGCGGAAGATTCGACACTACACCGTCAATTTCGGTCC
ACAGCATCCAGCCGCGCATGGTGTGCTACGGCTGATCCTCGAACTCAACG
GCGAGGAGATTGTGCGGGCGGATCCTCATGTCGGGCTACTGCACCGAGGG
ACGGAGAAGTTGATCGAATACAAGACGTACCTGCAAGCACTGCCCTACTT
CGACCGACTGGACTACGTGAGCATGATGACGAACGAGCAATGCTTCAGCT
TGGCAGTGGAAAAGTTGTTGAACATCGAGATTCCTGAGCGCGCTAAATGG
ATTCGGACACTGTTTGGCGAGATCACTCGGATATTGAACCATCTCATGAG
TGTGCTCAGTCACGCAATGGATGTTGGTGCTCTGACACCTTTCTTGTGGG
GCTTTGAGGAGCGAGAGAAGTTGATGGAGTTCTACGAGCGCGTATCTGGC
back to top