FC910041

Overview
NameFC910041
Unique NameFC910041
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length856
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11101 contig Ccv1_Contig11101:8..863. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC910041 vs. ExPASy Swiss-Prot
Match: TBC5B_DICDI (TBC1 domain family member 5 homolog B OS=Dictyostelium discoideum GN=tbc1d5B PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.692e-17
Identity = 51/170 (30.00%), Postives = 88/170 (51.76%), Query Frame = 2
Query:  332 LRGVQWRINLGILPSSYSSIEDLRRVTADSRRRYAEIRRHLLVDPHWHKDGSNSPDLVMDNPLSQNPDSTWGRFFRSAELEKMVDQDLSRLYPEHGSYFQTPGCQGMLRRILLLWCLRHPEFGYRQGMHELLAPLLYVLHVDVERLSQVRNEHEDHFTDKFDGLSFHEND 841
            LRG+ W++ LG L    + ++   R     R+RY +++     DP      SNS      +PLSQN DS W +FF++ + +K++  DL R +P++  +F  P  + M+  IL ++   +    YRQGMHELLAP++Y+ + +     ++         D    + + E+D
Sbjct:  285 LRGIAWKLFLGGL--DINRVDKWERDITQQRKRYEKLKEEHCFDPR----NSNSTY----DPLSQNDDSPWNKFFKNLDTQKIIKIDLERTHPDN-DFFSNPVIREMMATILFVYSKTNGIISYRQGMHELLAPIIYLYNQEYSSYKKLDENSSSTLVDFIYNIKYLEHD 443          
BLAST of FC910041 vs. ExPASy Swiss-Prot
Match: TBCD5_MOUSE (TBC1 domain family member 5 OS=Mus musculus GN=Tbc1d5 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.210e-17
Identity = 47/145 (32.41%), Postives = 82/145 (56.55%), Query Frame = 2
Query:  326 ANLRGVQWRINLGILPSSYSS-IEDLRRVTADSRRRYAEIRRHLLVDPHWHKDGSNSPDLVMDNPLSQNPDSTWGRFFRSAELEKMVDQDLSRLYPEHGSYFQTPGCQGMLRRILLLWCLRHPEFGYRQGMHELLAPLLYVLHVD 757
            +  R + W++ L +LP   S  I  ++ +    R  Y+ I+   + +P   +  +   DL+++NPLSQ+  S W +FF+  EL  M++QD+ R +PE   +FQ    + +L  +L  +   + +  Y+QGMHELLAP+++ LH D
Sbjct:   84 SRFRSICWKLFLCVLPQDKSQWISKIKEL----RAWYSSIKEIHITNP---RKAAGQQDLMINNPLSQDEGSLWNKFFQDKELRSMIEQDVKRTFPEM-QFFQQENVRKILTDVLFCYARENEQLLYKQGMHELLAPIIFTLHCD 220          
BLAST of FC910041 vs. ExPASy Swiss-Prot
Match: TBCD5_HUMAN (TBC1 domain family member 5 OS=Homo sapiens GN=TBC1D5 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.770e-17
Identity = 50/148 (33.78%), Postives = 82/148 (55.41%), Query Frame = 2
Query:  326 ANLRGVQWRINLGILPSSYSS----IEDLRRVTADSRRRYAEIRRHLLVDPHWHKDGSNSPDLVMDNPLSQNPDSTWGRFFRSAELEKMVDQDLSRLYPEHGSYFQTPGCQGMLRRILLLWCLRHPEFGYRQGMHELLAPLLYVLHVD 757
            +  R + W++ L +LP   S     IE+LR         Y+ I+   + +P   +      DL+++NPLSQ+  S W +FF+  EL  M++QD+ R +PE   +FQ    + +L  +L  +   + +  Y+QGMHELLAP+++VLH D
Sbjct:   84 SRFRSICWKLFLCVLPQDKSQWISRIEELRAW-------YSNIKEIHITNP---RKVVGQQDLMINNPLSQDEGSLWNKFFQDKELRSMIEQDVKRTFPEM-QFFQQENVRKILTDVLFCYARENEQLLYKQGMHELLAPIVFVLHCD 220          
BLAST of FC910041 vs. ExPASy Swiss-Prot
Match: TBC5A_DICDI (TBC1 domain family member 5 homolog A OS=Dictyostelium discoideum GN=tbc1d5A PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.444e-16
Identity = 53/186 (28.49%), Postives = 95/186 (51.08%), Query Frame = 2
Query:  332 LRGVQWRINLGILPSSYSSIEDLRRVTADSRRRYAEIRRHLLVDPHWHKDGS--------------NSPDLVMDNPLSQNPDSTWGRFFRSAELEKMVDQDLSRLYPEHGSYFQTPGCQGMLRRILLLWCLRHPEFGYRQGMHELLAPLLYVLHVD----------VERLSQVRNEHEDHFTDKFD 817
            +R + WRI LG L    ++  +    T  SR++Y   +++ +++P   KD                  P  ++D+PLSQ+ DS W +FF +   ++ +  D+SR YP  G +F+    Q ++ RIL ++  ++P+  Y QGM+E+LAP+LY ++ D           ++    +N+  +HF   FD
Sbjct:  379 VRSIFWRIALGTLSKDPTTWVER---TNSSRKKYETFKKNYIINPRNSKDQDADLQQQQQQQQQQQRKPVSLIDDPLSQSEDSLWNQFFDNENAQREISHDISRTYPGLG-FFERLDIQDIMIRILFIFSKQYPKIKYLQGMNEILAPILYSVYNDSHWFNNRDVFSKKNYDKKNKQYEHFDFVFD 560          
The following BLAST results are available for this feature:
BLAST of FC910041 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
TBC5B_DICDI1.692e-1730.00TBC1 domain family member 5 homolog B OS=Dictyoste... [more]
TBCD5_MOUSE2.210e-1732.41TBC1 domain family member 5 OS=Mus musculus GN=Tbc... [more]
TBCD5_HUMAN3.770e-1733.78TBC1 domain family member 5 OS=Homo sapiens GN=TBC... [more]
TBC5A_DICDI2.444e-1628.49TBC1 domain family member 5 homolog A OS=Dictyoste... [more]
back to top
Properties
Property NameValue
Genbank descriptionIC0AAA68DB02RM1 IVIA1 Citrus clementina cDNA clone IC0AAA68DB02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC910041 ID=FC910041; Name=FC910041; organism=Citrus clementina; type=EST; length=856bp
CTCAACTCATCATCTCTTTTTGAACAGCAAAATGAAACAAACAAATTTCC
TATTTTCTTCTCTTTCTCTAAATAAAGCTCGAGTCTTTATTACTTCTAAC
TAATTGAATTTCAATTTTTATAATTTTTTTTTCTTTTGGAAGTTTCGATT
TCGTTAGTTGCTTTGGCATTTTGGTGACAATTCAGCATCTGGGTTGTTGC
TTAATTCTGTTGTTGTAAATTTGAGAAAATAAATTTACGACATGTCGGTG
GTTTCGGCGGCGGGTTCATTTGAGGAATCGCCGACGAGGTCTGTCGGCTC
GGTGTCGGAGAGATCTGGGCCGCTTGCAAATCTTAGAGGAGTCCAGTGGC
GTATTAATCTTGGGATTTTGCCTTCTTCTTATTCTTCTATTGAGGATCTT
CGTAGAGTCACAGCTGATTCTAGAAGAAGATATGCCGAAATAAGAAGACA
CCTACTTGTTGATCCACATTGGCACAAGGATGGAAGTAATTCTCCTGACC
TCGTTATGGACAATCCACTTTCACAAAACCCAGATAGCACATGGGGACGT
TTCTTTCGTAGTGCCGAGTTGGAAAAGATGGTTGATCAAGACCTTTCACG
ATTATATCCAGAACATGGGAGCTACTTCCAGACACCAGGATGCCAAGGCA
TGTTAAGGCGAATCTTGTTATTATGGTGCCTTAGGCATCCAGAATTTGGT
TACAGACAAGGAATGCATGAACTCTTGGCTCCGTTGTTATACGTTCTTCA
TGTTGATGTTGAGCGTCTTTCTCAAGTTCGAAACGAACATGAAGATCACT
TCACGGACAAATTTGATGGCTTATCATTTCATGAAAATGACCTAACATAT
AATTTT
back to top