FC910044

Overview
NameFC910044
Unique NameFC910044
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length932
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC910044 vs. ExPASy Swiss-Prot
Match: IF41_WHEAT (Eukaryotic initiation factor iso-4F subunit p82-34 OS=Triticum aestivum PE=1 SV=2)

HSP 1 Score: 250.751 bits (639), Expect = 8.518e-66
Identity = 138/237 (58.23%), Postives = 167/237 (70.46%), Query Frame = 3
Query:  264 LPPHGGVASAF-KMGDLRFEGHERVRYTREQLLQLKEVAQLTEDILKIKQEIESEFDGEGQSWGGRAENNNLQSQFQA------RYLEADNRDWRTRSTTSG-----QEKSLEANQEKMEFGAHEGQLNSQFASAQISTNQGA--GPAPALIKAEVPWSARRGNLSEKDRVLKTVKGILNKLTPEKFDVLKGQLIDSGITTPDILKGVIELIFDKAVLEPTFCPMYALLCSDLNEKL 932
            L PHGG AS   ++GDL  E  ERVRY+R+QLL L+++  +TE IL+++QEIE+E +G+ QSW     N  LQ+Q Q       R+ E DNRDWR R+         +EKS +  +E  E     G+   QF     S++Q A  GP PALIKA+VPWSARRGNLSEKDRVLKTVKGILNKLTPEKFD+LKGQL+DSGITT DILK VI LIF+KAV EPTFCPMYA LCS+LN+ L
Sbjct:   40 LRPHGGGASGVSRIGDLHSESRERVRYSRDQLLDLRKITDVTEQILRLQQEIEAELNGDDQSWVRNDSNVQLQTQAQPQVQAQNRFTETDNRDWRARTEKPPAPAVQEEKSWDNIREVKEQYNASGRQQEQFNRQDQSSSQKAQVGPPPALIKADVPWSARRGNLSEKDRVLKTVKGILNKLTPEKFDLLKGQLLDSGITTADILKDVISLIFEKAVFEPTFCPMYAQLCSELNDNL 276          
BLAST of FC910044 vs. ExPASy Swiss-Prot
Match: C3H43_ORYSJ (Zinc finger CCCH domain-containing protein 43 OS=Oryza sativa subsp. japonica GN=Os06g0520600 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.955e-34
Identity = 88/215 (40.93%), Postives = 127/215 (59.07%), Query Frame = 3
Query:  324 HERVRYTREQLLQLKEVAQLTEDILKIKQEIESEFDGEGQSWGGRAENNNLQSQFQARYLEADNRDWRTRSTTSGQEKSLEAN----QEKMEFGAHEGQLNSQFASAQISTNQG-------AGPAPA-LIKAEVPWSARRGNLSEKDRVLKTVKGILNKLTPEKFDVLKGQLIDSGITTPDILKGVIELIFDKAVLEPTFCPMYALLCSDLNEKL 932
            H+R+ YTR+QLLQL +  ++ +DILK  Q+I  E +GE +  G  AE +++Q+    R+   D+RDW + S  +  E+    N    +E    G  + + N    S+    ++          P  + LIKAEVP S +RG +S KD VLKT+K ILN  +P+ FD+ KGQLI++ I++ DILK VI LIF+K V EP FC  YA LC+ LN+ L
Sbjct:  235 HQRISYTRDQLLQLCQNVEVPKDILKFCQDINVELNGEDKISGFGAEKDHVQTPSYKRFDATDSRDWHSWSAQTNWEQKFWDNFSEAKEPYSLGWKQEKFNKPDQSSFHFDSKDQWLKFIKCTPCKSTLIKAEVPLSIQRGIISGKDEVLKTLKSILNTFSPKMFDLQKGQLIETRISSADILKDVINLIFEKVVAEPAFCSTYAQLCTYLNQNL 449          
BLAST of FC910044 vs. ExPASy Swiss-Prot
Match: IF4G_DICDI (Eukaryotic translation initiation factor 4 gamma OS=Dictyostelium discoideum GN=eif4g PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.423e-12
Identity = 65/242 (26.86%), Postives = 108/242 (44.63%), Query Frame = 3
Query:  327 ERVRYTREQLLQLK--EVAQLTEDILKIKQEIES-----EFDGEGQSWGGRAENNNL-----------QSQFQARYLEADNRDWRTRSTTS---GQEKSLEAN------------QEKMEFGAHEGQLNSQFASAQIST---NQGAGPAPALIKA----EVPWSARRGN-LSEKDRVLKTVKGILNKLTPEKFDVLKGQLIDSGITTPD-ILKGVIELIFDKAVLEPTFCPMYALLCSDLNE 926
            E++ Y++E ++ LK   + + T  +  +K +IE+     + +  G   GG  +N N+             Q   +Y    N  +  ++  +   GQ++  + N            Q++++ G     L       Q +T        P    I +    E  W   + N L +  +VL+    ILNK+TPEKFDVL  +L++ GI   + + KG I+LIFDKA+ E  FC MY  LC  + E
Sbjct:  593 EKIVYSKELMMSLKPKSMEEPTGPLKDLKNQIETNTNQNQLNRSGNKIGGNQQNKNMGMGGMNMNPNYPPQMNMKYPPQMNMKYPPKNYNNQVQGQQQQQQGNPNFNKYAPGYQYQQQIQQGMPPPTLQPNPYQPQQATYGITFSRDPVQPSISSQPVNEKRWVPTKVNALDDSQKVLRKANFILNKITPEKFDVLTEELLELGIVDDEKVHKGTIDLIFDKALNESKFCTMYTNLCKKIFE 834          
BLAST of FC910044 vs. ExPASy Swiss-Prot
Match: IF4G2_RABIT (Eukaryotic translation initiation factor 4 gamma 2 OS=Oryctolagus cuniculus GN=EIF4G2 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 9.250e-12
Identity = 40/80 (50.00%), Postives = 54/80 (67.50%), Query Frame = 3
Query:  696 SARRGNLSEKDR---VLKTVKGILNKLTPEKFDVLKGQLIDSGITTPDILKGVIELIFDKAVLEPTFCPMYALLCSDLNE 926
            SA   + +EK+R   + + V+GILNKLTPEKFD L  +L++ G+ +  ILKGVI LI DKA+ EP +  +YA LC  L E
Sbjct:   62 SAANNSANEKERHDAIFRKVRGILNKLTPEKFDKLCLELLNVGVESKLILKGVILLIVDKALEEPKYSSLYAQLCLRLAE 141          
BLAST of FC910044 vs. ExPASy Swiss-Prot
Match: IF4G2_PONAB (Eukaryotic translation initiation factor 4 gamma 2 OS=Pongo abelii GN=EIF4G2 PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 9.250e-12
Identity = 40/80 (50.00%), Postives = 54/80 (67.50%), Query Frame = 3
Query:  696 SARRGNLSEKDR---VLKTVKGILNKLTPEKFDVLKGQLIDSGITTPDILKGVIELIFDKAVLEPTFCPMYALLCSDLNE 926
            SA   + +EK+R   + + V+GILNKLTPEKFD L  +L++ G+ +  ILKGVI LI DKA+ EP +  +YA LC  L E
Sbjct:   62 SAANNSANEKERHDAIFRKVRGILNKLTPEKFDKLCLELLNVGVESKLILKGVILLIVDKALEEPKYSSLYAQLCLRLAE 141          
BLAST of FC910044 vs. ExPASy Swiss-Prot
Match: IF4G2_MOUSE (Eukaryotic translation initiation factor 4 gamma 2 OS=Mus musculus GN=Eif4g2 PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 9.250e-12
Identity = 40/80 (50.00%), Postives = 54/80 (67.50%), Query Frame = 3
Query:  696 SARRGNLSEKDR---VLKTVKGILNKLTPEKFDVLKGQLIDSGITTPDILKGVIELIFDKAVLEPTFCPMYALLCSDLNE 926
            SA   + +EK+R   + + V+GILNKLTPEKFD L  +L++ G+ +  ILKGVI LI DKA+ EP +  +YA LC  L E
Sbjct:   62 SAANNSANEKERHDAIFRKVRGILNKLTPEKFDKLCLELLNVGVESKLILKGVILLIVDKALEEPKYSSLYAQLCLRLAE 141          
BLAST of FC910044 vs. ExPASy Swiss-Prot
Match: IF4G2_HUMAN (Eukaryotic translation initiation factor 4 gamma 2 OS=Homo sapiens GN=EIF4G2 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 9.250e-12
Identity = 40/80 (50.00%), Postives = 54/80 (67.50%), Query Frame = 3
Query:  696 SARRGNLSEKDR---VLKTVKGILNKLTPEKFDVLKGQLIDSGITTPDILKGVIELIFDKAVLEPTFCPMYALLCSDLNE 926
            SA   + +EK+R   + + V+GILNKLTPEKFD L  +L++ G+ +  ILKGVI LI DKA+ EP +  +YA LC  L E
Sbjct:   62 SAANNSANEKERHDAIFRKVRGILNKLTPEKFDKLCLELLNVGVESKLILKGVILLIVDKALEEPKYSSLYAQLCLRLAE 141          
BLAST of FC910044 vs. ExPASy Swiss-Prot
Match: IF4G2_BOVIN (Eukaryotic translation initiation factor 4 gamma 2 OS=Bos taurus GN=EIF4G2 PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 9.250e-12
Identity = 40/80 (50.00%), Postives = 54/80 (67.50%), Query Frame = 3
Query:  696 SARRGNLSEKDR---VLKTVKGILNKLTPEKFDVLKGQLIDSGITTPDILKGVIELIFDKAVLEPTFCPMYALLCSDLNE 926
            SA   + +EK+R   + + V+GILNKLTPEKFD L  +L++ G+ +  ILKGVI LI DKA+ EP +  +YA LC  L E
Sbjct:   62 SAANNSANEKERHDAIFRKVRGILNKLTPEKFDKLCLELLNVGVESKLILKGVILLIVDKALEEPKYSSLYAQLCLRLAE 141          
The following BLAST results are available for this feature:
BLAST of FC910044 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
IF41_WHEAT8.518e-6658.23Eukaryotic initiation factor iso-4F subunit p82-34... [more]
C3H43_ORYSJ2.955e-3440.93Zinc finger CCCH domain-containing protein 43 OS=O... [more]
IF4G_DICDI5.423e-1226.86Eukaryotic translation initiation factor 4 gamma O... [more]
IF4G2_RABIT9.250e-1250.00Eukaryotic translation initiation factor 4 gamma 2... [more]
IF4G2_PONAB9.250e-1250.00Eukaryotic translation initiation factor 4 gamma 2... [more]
IF4G2_MOUSE9.250e-1250.00Eukaryotic translation initiation factor 4 gamma 2... [more]
IF4G2_HUMAN9.250e-1250.00Eukaryotic translation initiation factor 4 gamma 2... [more]
IF4G2_BOVIN9.250e-1250.00Eukaryotic translation initiation factor 4 gamma 2... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA10AF02RM1 IVIA1 Citrus clementina cDNA clone IC0AAA10AF02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC910044 ID=FC910044; Name=FC910044; organism=Citrus clementina; type=EST; length=932bp
AAATTTCAAAATAACATTAATTAAGAATTAAGAATTAAAAAAAAAAAAAA
AACCCCACACACAAATCACAGCCTCTCTTAAAAACCCTAATTTTGCTCAT
TTCTCTTTTATCACAACGGAAGCCTTTTTCTGGAGGTATTATGCAGGCAG
CAGATCAGACGGTGATAAGCTTGAGACCCGGTGGCGGCGGCGGTCCACGT
GGCACCAGATTGTTCACTCATCGCTTCGATTCCTCATCAACACCCTCGTC
TGATTCTCAAACTCTTCCCCCTCATGGCGGCGTCGCTTCCGCTTTCAAGA
TGGGGGACTTGCGGTTTGAAGGTCATGAACGTGTTCGATACACCCGAGAG
CAGCTGTTACAACTTAAGGAGGTTGCTCAACTAACTGAAGACATTTTGAA
GATAAAGCAAGAAATTGAGTCTGAGTTTGATGGCGAAGGTCAAAGCTGGG
GTGGTCGTGCAGAAAATAACAATCTGCAATCTCAATTCCAAGCTCGTTAC
TTGGAGGCAGACAATCGTGATTGGCGTACTCGATCAACCACCTCTGGACA
AGAGAAATCCTTGGAAGCAAATCAAGAAAAGATGGAATTTGGTGCTCATG
AGGGCCAACTTAATTCCCAGTTCGCAAGTGCTCAAATCTCCACTAACCAA
GGGGCAGGACCTGCTCCAGCTCTAATTAAGGCTGAAGTTCCATGGTCAGC
AAGACGAGGAAATCTCTCAGAGAAGGATCGTGTTCTTAAGACTGTTAAAG
GAATACTGAATAAATTGACTCCAGAGAAGTTTGATGTTCTCAAGGGTCAG
CTAATAGACTCTGGAATTACAACCCCAGATATTCTGAAGGGTGTTATTGA
ACTTATATTTGATAAGGCTGTCTTGGAGCCTACATTTTGTCCCATGTATG
CACTTTTATGCTCTGACCTTAACGAGAAACTT
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