FC910590

Overview
NameFC910590
Unique NameFC910590
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length877
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC910590 vs. ExPASy Swiss-Prot
Match: DAPF_ARATH (Diaminopimelate epimerase, chloroplastic OS=Arabidopsis thaliana GN=DAPF PE=1 SV=1)

HSP 1 Score: 366.311 bits (939), Expect = 1.274e-100
Identity = 183/267 (68.54%), Postives = 204/267 (76.40%), Query Frame = 1
Query:   76 MAITTTRSLSVTPVTRRSATPINXXXXXXXXXXXXXXXXXNLTLKVPSFRVSASSMSSIHAPESASRTSFLDRRESGFLHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVDKLNLAEIGPK 876
            M I    ++SV P +RR +   +                     K PS RVSA++       E  S  SFLD++E+G LHFVKYHGLGNDFILVDNR+S+EP+IT EQA KLCDRNFG+GADGVIFAMPGVNGTDY MRIFNSDGSEPEMCGNGVRCFARFIAELENL GK SFT+HTGAGLIVPEIQDDG+VKVDMG PILKA DVPT LS NK ++VV++EL VDGV WNVTCVSMGNPHC+TFG K G NLKVD LNL EIGPK
Sbjct:    1 MEIAAVSTVSVAPQSRRVSNAFSRNLGSVSSLSFGFFEK-EYCFKSPSLRVSAAASMDAVTAEKFSPASFLDKKETGVLHFVKYHGLGNDFILVDNRDSSEPKITQEQAAKLCDRNFGVGADGVIFAMPGVNGTDYAMRIFNSDGSEPEMCGNGVRCFARFIAELENLQGKHSFTIHTGAGLIVPEIQDDGQVKVDMGTPILKAQDVPTKLSGNKGEAVVEAELVVDGVSWNVTCVSMGNPHCITFGKKGGPNLKVDDLNLPEIGPK 266          
BLAST of FC910590 vs. ExPASy Swiss-Prot
Match: DAPF_ORYSJ (Putative diaminopimelate epimerase, chloroplastic OS=Oryza sativa subsp. japonica GN=DAPF PE=3 SV=1)

HSP 1 Score: 323.553 bits (828), Expect = 9.470e-88
Identity = 155/222 (69.82%), Postives = 184/222 (82.88%), Query Frame = 1
Query:  214 PSFRVSASSMSSIHAPESASRTSFLDRRESG-FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVDKLNLAEIGPK 876
            P+ R   ++M+ +  P SA+  +FL+RRES   LHFVKY GLGNDFI+VDNR+S  P++TPE+A KLCDRNFG+GADGVIF MPGVNG DYTMRIFNSDGSEPEMCGNGVRCFARFIAELENL G  SF +HTGAGLI+PEIQ+DGKVKVDMG+PIL   D+PT L + K+++VV+++L VDG  W VTCVSMGNPHCVTFGTKE + L VD L L++IGPK
Sbjct:   38 PTARRCVAAMA-VSTPRSAAAAAFLERRESERALHFVKYQGLGNDFIMVDNRDSAVPKVTPEEAAKLCDRNFGVGADGVIFVMPGVNGADYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLQGTHSFKIHTGAGLIIPEIQNDGKVKVDMGQPILSGPDIPTKLPSTKNEAVVQADLAVDGSTWQVTCVSMGNPHCVTFGTKELKVLHVDDLKLSDIGPK 258          
BLAST of FC910590 vs. ExPASy Swiss-Prot
Match: DAPF_ORYSI (Putative diaminopimelate epimerase, chloroplastic OS=Oryza sativa subsp. indica GN=DAPF PE=3 SV=1)

HSP 1 Score: 322.398 bits (825), Expect = 2.110e-87
Identity = 154/222 (69.37%), Postives = 184/222 (82.88%), Query Frame = 1
Query:  214 PSFRVSASSMSSIHAPESASRTSFLDRRESG-FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVDKLNLAEIGPK 876
            P+ R   ++M+ +  P SA+  +FL+RRES   LHFVKY GLGNDFI++DNR+S  P++TPE+A KLCDRNFG+GADGVIF MPGVNG DYTMRIFNSDGSEPEMCGNGVRCFARFIAELENL G  SF +HTGAGLI+PEIQ+DGKVKVDMG+PIL   D+PT L + K+++VV+++L VDG  W VTCVSMGNPHCVTFGTKE + L VD L L++IGPK
Sbjct:   41 PTARRCVAAMA-VSTPRSAAAAAFLERRESERALHFVKYQGLGNDFIMMDNRDSAVPKVTPEEAAKLCDRNFGVGADGVIFVMPGVNGADYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLQGTHSFKIHTGAGLIIPEIQNDGKVKVDMGQPILSGPDIPTKLPSTKNEAVVQADLAVDGSTWQVTCVSMGNPHCVTFGTKELKVLHVDDLKLSDIGPK 261          
BLAST of FC910590 vs. ExPASy Swiss-Prot
Match: DAPF_TRIEI (Diaminopimelate epimerase OS=Trichodesmium erythraeum (strain IMS101) GN=dapF PE=3 SV=1)

HSP 1 Score: 257.684 bits (657), Expect = 6.382e-68
Identity = 126/187 (67.38%), Postives = 148/187 (79.14%), Query Frame = 1
Query:  316 FVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVDKLNLAEIGPK 876
            F KYHGLGNDFIL+DNR+  +P +TPEQA +LCDRNFGIGADGVIFA+PGV  TDYTMRIFNSDGSEPEMCGNG+RC A+FIAELEN N K  + +HTGAG+IVPE+Q DG+V VDMG+P L AS++PT+L AN D  VV   L+V G  W VTCVSMGNPHC+TF         V  ++LA+IGPK
Sbjct:    5 FTKYHGLGNDFILIDNRHQLQPILTPEQAIELCDRNFGIGADGVIFALPGVKQTDYTMRIFNSDGSEPEMCGNGIRCLAKFIAELEN-NNKTKYNIHTGAGIIVPELQGDGQVTVDMGQPRLLASEIPTTL-ANADDKVVDQLLEVGGKSWFVTCVSMGNPHCITFVE------DVTAIDLAKIGPK 183          
BLAST of FC910590 vs. ExPASy Swiss-Prot
Match: DAPF_SYNY3 (Diaminopimelate epimerase OS=Synechocystis sp. (strain PCC 6803) GN=dapF PE=3 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 3.624e-63
Identity = 122/188 (64.89%), Postives = 144/188 (76.60%), Query Frame = 1
Query:  310 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVDKLNLAEIGP 873
            L F KYHGLGNDFILVDNR STEP +TP+QA++LCDR+FGIGADGVIFA+PG  GTDYTMRIFNSDGSEPEMCGNG+RC A+F+A+LE +  K ++ +HT AG+I P++  DG+VKVDMGEP L A  +PT+L A   + VV   L V G  W VTCVSMGNPHC+TF         VD LNL EIGP
Sbjct:    3 LSFSKYHGLGNDFILVDNRQSTEPCLTPDQAQQLCDRHFGIGADGVIFALPGQGGTDYTMRIFNSDGSEPEMCGNGIRCLAKFLADLEGVEEK-TYRIHTLAGVITPQLLADGQVKVDMGEPQLLAELIPTTL-APAGEKVVDLPLAVAGQTWAVTCVSMGNPHCLTFVD------DVDSLNLTEIGP 182          
BLAST of FC910590 vs. ExPASy Swiss-Prot
Match: DAPF2_ANASP (Diaminopimelate epimerase 2 OS=Anabaena sp. (strain PCC 7120) GN=dapF2 PE=3 SV=2)

HSP 1 Score: 236.884 bits (603), Expect = 1.166e-61
Identity = 115/190 (60.53%), Postives = 142/190 (74.74%), Query Frame = 1
Query:  310 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLN-GKQSFTVHTGAGLIVPEIQDDGKVKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVDKLNLAEIGPK 876
            + F KYHGLGNDFIL+DNR S  P ITPE+A ++CDR+FGIGADGVIFA+PG NGTDYTMRIFNSDGSEPEMCGNG+RC A F+A+LE L+  K ++ +HT AG+I P++  DG++KVDMG P L A ++PT+L A  D  V+   L+V+G  W VTCVSMGNPHC+TF         V  + L  IGPK
Sbjct:    3 IEFTKYHGLGNDFILIDNRASKTPAITPEKAVEMCDRHFGIGADGVIFALPGENGTDYTMRIFNSDGSEPEMCGNGIRCLAAFLADLEGLSRNKDTYRIHTLAGVITPQLTPDGQIKVDMGLPRLLAGEIPTTLGA-ADGKVINQPLEVEGQTWEVTCVSMGNPHCITFVE------DVAAIPLEIIGPK 185          
BLAST of FC910590 vs. ExPASy Swiss-Prot
Match: DAPF_NOSP7 (Diaminopimelate epimerase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=dapF PE=3 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 8.354e-60
Identity = 113/190 (59.47%), Postives = 141/190 (74.21%), Query Frame = 1
Query:  310 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLN-GKQSFTVHTGAGLIVPEIQDDGKVKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVDKLNLAEIGPK 876
            + F KYHGLGNDFIL+DNR+S+ P +TPEQA +LCDR+FGIGADGVIFA+PG NGTDYTMRIFNSDGSEPEMCGNG+RC A F+A+LE  +  K S+ +HT  G++ P++  DG VKVDMG P L A ++PT+L A  ++ V+   L+V G  W VTCV+MGNPHC+TF         V  + L  IGPK
Sbjct:    3 IEFTKYHGLGNDFILIDNRSSSLPVLTPEQAIQLCDRHFGIGADGVIFALPGENGTDYTMRIFNSDGSEPEMCGNGIRCLAGFLADLEGQSRNKDSYRIHTLGGVMTPQLLSDGLVKVDMGLPRLLAGEIPTTL-APVEEKVISVPLEVAGKTWEVTCVNMGNPHCITFVE------DVAAIELESIGPK 185          
BLAST of FC910590 vs. ExPASy Swiss-Prot
Match: DAPF_SYNP2 (Diaminopimelate epimerase OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=dapF PE=3 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 7.072e-59
Identity = 109/169 (64.50%), Postives = 131/169 (77.51%), Query Frame = 1
Query:  310 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGK-QSFTVHTGAGLIVPEIQDDGKVKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTF 813
            L F KY GLGNDFIL+DNR  T P +TPEQA +LCDR+FGIGADGVIFA+PG  G DYTMRIFNSDGSEPEMCGNG+RC ARFI  LE  N   +++++HT AG+I P ++ D  V+VDMGEPIL A+D+PT+L  +  Q+ V   L+V G  W VTCVSMGNPHC+TF
Sbjct:    3 LEFTKYQGLGNDFILLDNRQQTTPLVTPEQAIQLCDRHFGIGADGVIFALPGQAGADYTMRIFNSDGSEPEMCGNGIRCLARFIDHLEGGNAPGKTYSIHTLAGMIRPRLETDALVRVDMGEPILTATDIPTTLKDSNGQA-VNQPLEVAGKTWMVTCVSMGNPHCITF 170          
BLAST of FC910590 vs. ExPASy Swiss-Prot
Match: DAPF_SYNP6 (Diaminopimelate epimerase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=dapF PE=3 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 5.987e-58
Identity = 114/189 (60.32%), Postives = 140/189 (74.07%), Query Frame = 1
Query:  310 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQS-FTVHTGAGLIVPEIQDDGKVKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVDKLNLAEIGP 873
            L F KYHGLGNDFILVDNR S EPR+TPEQA ++CDRNFG+GADGVIFA+PG   +DY MRIFNSDGSEPEMCGNG+RC A+F++EL+   G QS + + TGAGLIVP + + G V VDMG   LK  ++PT+L+   D+ VV+++L+V    W VT VSMGNPHC+TF         V  + LAEIGP
Sbjct:    3 LQFAKYHGLGNDFILVDNRESGEPRLTPEQAVQVCDRNFGVGADGVIFALPGSGDSDYVMRIFNSDGSEPEMCGNGIRCLAKFLSELD--GGAQSRYRIATGAGLIVPTLTETGLVTVDMGPAYLKPVEIPTTLTGTGDR-VVEADLEVGDRPWKVTTVSMGNPHCITFVE------DVAAVPLAEIGP 182          
BLAST of FC910590 vs. ExPASy Swiss-Prot
Match: DAPF_SYNE7 (Diaminopimelate epimerase OS=Synechococcus elongatus (strain PCC 7942) GN=dapF PE=3 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 5.987e-58
Identity = 114/189 (60.32%), Postives = 140/189 (74.07%), Query Frame = 1
Query:  310 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQS-FTVHTGAGLIVPEIQDDGKVKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVDKLNLAEIGP 873
            L F KYHGLGNDFILVDNR S EPR+TPEQA ++CDRNFG+GADGVIFA+PG   +DY MRIFNSDGSEPEMCGNG+RC A+F++EL+   G QS + + TGAGLIVP + + G V VDMG   LK  ++PT+L+   D+ VV+++L+V    W VT VSMGNPHC+TF         V  + LAEIGP
Sbjct:    3 LQFAKYHGLGNDFILVDNRESGEPRLTPEQAVQVCDRNFGVGADGVIFALPGSGDSDYVMRIFNSDGSEPEMCGNGIRCLAKFLSELD--GGAQSRYRIATGAGLIVPTLTETGLVTVDMGPAYLKPVEIPTTLTGTGDR-VVEADLEVGDRPWKVTTVSMGNPHCITFVE------DVAAVPLAEIGP 182          
The following BLAST results are available for this feature:
BLAST of FC910590 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 402
Match NameE-valueIdentityDescription
DAPF_ARATH1.274e-10068.54Diaminopimelate epimerase, chloroplastic OS=Arabid... [more]
DAPF_ORYSJ9.470e-8869.82Putative diaminopimelate epimerase, chloroplastic ... [more]
DAPF_ORYSI2.110e-8769.37Putative diaminopimelate epimerase, chloroplastic ... [more]
DAPF_TRIEI6.382e-6867.38Diaminopimelate epimerase OS=Trichodesmium erythra... [more]
DAPF_SYNY33.624e-6364.89Diaminopimelate epimerase OS=Synechocystis sp. (st... [more]
DAPF2_ANASP1.166e-6160.53Diaminopimelate epimerase 2 OS=Anabaena sp. (strai... [more]
DAPF_NOSP78.354e-6059.47Diaminopimelate epimerase OS=Nostoc punctiforme (s... [more]
DAPF_SYNP27.072e-5964.50Diaminopimelate epimerase OS=Synechococcus sp. (st... [more]
DAPF_SYNP65.987e-5860.32Diaminopimelate epimerase OS=Synechococcus sp. (st... [more]
DAPF_SYNE75.987e-5860.32Diaminopimelate epimerase OS=Synechococcus elongat... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA27CD07RM1 IVIA1 Citrus clementina cDNA clone IC0AAA27CD07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC910590 ID=FC910590; Name=FC910590; organism=Citrus clementina; type=EST; length=877bp
CTAAACCAACCACCGCATTTGACATTACCGCGACCAAGAGCAGAAACAGA
AAAGCCGTCAAAGCAAGCATCGAGCATGGCCATAACCACCACGCGCTCAC
TCTCCGTCACGCCCGTAACTCGCCGCTCTGCCACTCCAATCAATCCTCTT
CGATCCTCCTCTTTATCTTATTCGTTGACTCGACCATTCAGTTCCAATTT
GACTCTCAAAGTCCCTAGCTTCCGCGTCTCGGCATCTTCTATGAGCAGCA
TTCACGCTCCGGAGAGCGCTTCGCGAACCTCTTTTCTTGACCGCAGAGAG
AGCGGCTTCCTTCATTTCGTCAAGTACCATGGCCTCGGCAACGACTTCAT
TTTGGTTGATAACAGGAATTCTACGGAACCTAGGATAACTCCGGAGCAAG
CGGAGAAGCTGTGTGATCGGAATTTTGGCATTGGGGCCGATGGAGTGATC
TTCGCCATGCCTGGAGTCAATGGCACTGATTATACAATGAGAATTTTCAA
TTCTGATGGTAGCGAGCCAGAGATGTGTGGCAATGGAGTTCGATGCTTTG
CCAGATTCATTGCTGAGCTTGAAAATTTAAATGGGAAGCAAAGTTTCACT
GTCCACACTGGAGCTGGTCTCATTGTTCCAGAAATTCAAGATGACGGGAA
GGTCAAAGTGGATATGGGTGAACCAATACTTAAAGCTTCAGATGTACCTA
CAAGTTTATCAGCAAATAAAGATCAATCTGTTGTTAAGTCAGAACTTGAT
GTTGATGGTGTTAAATGGAATGTGACTTGTGTTAGCATGGGAAACCCTCA
CTGTGTAACCTTTGGTACAAAAGAAGGGCAGAATTTGAAGGTTGATAAAC
TAAACTTGGCTGAAATTGGTCCTAAAT
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