FC912157

Overview
NameFC912157
Unique NameFC912157
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length895
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10588 contig Ccv1_Contig10588:91..985. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC912157 vs. ExPASy Swiss-Prot
Match: FBW4_ARATH (F-box/WD-40 repeat-containing protein At3g52030 OS=Arabidopsis thaliana GN=At3g52030 PE=2 SV=2)

HSP 1 Score: 318.931 bits (816), Expect = 2.412e-86
Identity = 167/291 (57.39%), Postives = 198/291 (68.04%), Query Frame = 2 
Query:  107 TIESLNGDIICIIFSSLGFFDLVRCSAVCNSWNAIINRCKLLQLLYCKLHGFSNTSGSS-------LRLHLEELAMKHHRFALEESRIDIDQWKAHSVGVDQCRMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESK---------------------IVGLVGTRICIWRRNGLRSVFPSLEGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQXXXXXXXXXXXXXXXXXXDQRVATLRXT-DCTGIKTLCYN 892
            +IESL+ DI+CIIFS L  FDLV C+ VCNSWNA+I R KLLQ    K+H   + S SS         + +E+ AMKHH+ AL   RI+I++W+AHS  V QCRMK+GL+LTGVGDKVMRLWSL+ YKC+EEYSLP+A+SL+DFDFDESK                     IVGLVGTRI IWRRNG RS+FPS  GTF KGLCMRY DPEAVVGCEDGTARVFDMYS+ CSQIIR    P+T LSLS++Q                  DQ VATL+ T    GI+T+C+N
Sbjct:   22 SIESLDADILCIIFSFLDLFDLVHCTVVCNSWNAVIKRLKLLQASCRKMHHLGSDSPSSSTSLDRPAEIDVEDFAMKHHKMALLRGRIEIERWEAHSHRVSQCRMKKGLLLTGVGDKVMRLWSLKSYKCMEEYSLPDASSLIDFDFDESKKLEVVSLAWEYFDSVVVVVVEIVGLVGTRISIWRRNGQRSIFPSRAGTFPKGLCMRYIDPEAVVGCEDGTARVFDMYSKTCSQIIRTQGGPITCLSLSDNQLFLSGSSLGRVTVSDPLMDQPVATLKSTITAGGIQTICFN 312
The following BLAST results are available for this feature:
BLAST of FC912157 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
FBW4_ARATH2.412e-8657.39F-box/WD-40 repeat-containing protein At3g52030 OS... [more]
back to top
Properties
Property NameValue
Genbank descriptionIC0AAA65CA05RM1 IVIA1 Citrus clementina cDNA clone IC0AAA65CA05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC912157 ID=FC912157; Name=FC912157; organism=Citrus clementina; type=EST; length=895bp
TGCCACACTAAGTTGGACAACCGCCGACGGCAGAGAGACGATGGAGCGCA
CAAGGTCCAGTAGGCGGTCACCGCCGCCGAAGAAGAGAAGCTCGAAACCT
CGGGCGACAATTGAATCCCTCAACGGCGACATAATCTGTATAATCTTCTC
ATCCCTCGGGTTCTTCGATCTCGTTAGATGTTCTGCCGTTTGCAACTCCT
GGAACGCCATTATAAACAGATGTAAGTTACTACAACTACTCTATTGCAAG
CTACATGGCTTCTCGAATACGTCGGGTTCTTCGTTGAGGTTGCATTTGGA
GGAGCTAGCAATGAAGCACCATCGATTTGCTTTAGAAGAAAGTCGAATTG
ATATTGATCAATGGAAAGCTCATTCAGTTGGGGTTGATCAGTGCCGAATG
AAGAGGGGTTTGATTCTAACTGGTGTAGGTGATAAGGTTATGCGGCTCTG
GTCACTAGAAGGATACAAATGTGTGGAAGAGTATTCACTTCCAAATGCAG
CTTCACTGGTTGATTTTGATTTTGATGAGAGCAAGATTGTTGGTTTGGTT
GGCACACGTATATGCATATGGAGGCGCAATGGTTTAAGGAGTGTATTTCC
CTCACTTGAAGGCACATTCATGAAGGGTTTATGTATGCGATACTTTGATC
CAGAGGCTGTAGTTGGATGTGAGGATGGGACTGCTCGTGTGTTTGACATG
TATAGTAGAAAATGCTCTCAAATCATTAGGATGCATTGTGCACCAGTAAC
ATCTTTATCTTTGAGTGAGGATCAGTTAATTATTAGTGGATCCTCCCTGG
GCAGTATCGCAATAGCTGGTCTCTCCTCTGATCAGCGGGTAGCTACCCTT
AGATNCACTGATTGTACAGGCATAAAGACATTGTGTTACAACCCA
back to top