FC912495

Overview
NameFC912495
Unique NameFC912495
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length869
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC912495 vs. ExPASy Swiss-Prot
Match: 2ABB_ARATH (Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform OS=Arabidopsis thaliana GN=PP2AB2 PE=2 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 4.814e-60
Identity = 114/137 (83.21%), Postives = 122/137 (89.05%), Query Frame = 2
Query:  464 NGGGSSEAAAQP--LEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKT 868
            NGG  +  +  P  LEW+FSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDT+D+GG R+DLE  DY + RHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQ AN AL+LLSTNDKT
Sbjct:    2 NGGDDAATSGPPPSLEWRFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTKDHGGSRKDLEQTDYPV-RHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQPANGALFLLSTNDKT 137          
BLAST of FC912495 vs. ExPASy Swiss-Prot
Match: 2ABA_ARATH (Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform OS=Arabidopsis thaliana GN=PP2AB1 PE=1 SV=2)

HSP 1 Score: 220.32 bits (560), Expect = 1.110e-56
Identity = 110/139 (79.14%), Postives = 121/139 (87.05%), Query Frame = 2
Query:  464 NGGGSSEAAAQ----PLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKT 868
            NGG    AA+     PLEW+FSQVFGER+AGEEVQEVDIISAIEFD SG+HLATGDRGGRVVLFERTDT ++ G RR+LE  DY + RHPEFRYKTEFQSH+PEFDYLKSLEIEEKINKIRWCQ+AN AL+LLSTNDKT
Sbjct:    2 NGGDEVVAASADPSLPLEWRFSQVFGERSAGEEVQEVDIISAIEFDNSGNHLATGDRGGRVVLFERTDTNNSSGTRRELEEADYPL-RHPEFRYKTEFQSHDPEFDYLKSLEIEEKINKIRWCQTANGALFLLSTNDKT 139          
BLAST of FC912495 vs. ExPASy Swiss-Prot
Match: 2ABB_ORYSJ (Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform OS=Oryza sativa subsp. japonica GN=Os02g0224200 PE=2 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 5.508e-56
Identity = 104/125 (83.20%), Postives = 116/125 (92.80%), Query Frame = 2
Query:  494 QPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKT 868
            QP EW+F+QVFGER AGE+VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTD+RD+   R +LE  DY ++RHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKI+WCQ+AN+AL+LLSTNDKT
Sbjct:   28 QPREWRFAQVFGERAAGEDVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDSRDSAS-RSELERQDYPIARHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIKWCQTANNALFLLSTNDKT 151          
BLAST of FC912495 vs. ExPASy Swiss-Prot
Match: 2ABB_ORYSI (Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform OS=Oryza sativa subsp. indica GN=OsI_006296 PE=2 SV=2)

HSP 1 Score: 218.009 bits (554), Expect = 5.508e-56
Identity = 104/125 (83.20%), Postives = 116/125 (92.80%), Query Frame = 2
Query:  494 QPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKT 868
            QP EW+F+QVFGER AGE+VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTD+RD+   R +LE  DY ++RHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKI+WCQ+AN+AL+LLSTNDKT
Sbjct:   28 QPREWRFAQVFGERAAGEDVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDSRDSAS-RSELERQDYPIARHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIKWCQTANNALFLLSTNDKT 151          
BLAST of FC912495 vs. ExPASy Swiss-Prot
Match: 2ABA_ORYSJ (Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform OS=Oryza sativa subsp. japonica GN=Os06g0563300 PE=2 SV=2)

HSP 1 Score: 214.157 bits (544), Expect = 7.954e-55
Identity = 103/134 (76.87%), Postives = 117/134 (87.31%), Query Frame = 2
Query:  467 GGGSSEAAAQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKT 868
            G  S++     +EW+F+QVFGER AGE+VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTD RDN   RR++E  D  ++RHPEFRYK+EFQSHEPEFDYLKSLEIEEKINKIRWCQ+AN++L LLSTNDKT
Sbjct:   18 GSSSAQQGHPTMEWRFAQVFGERAAGEDVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDARDN-ASRREMERQDAPITRHPEFRYKSEFQSHEPEFDYLKSLEIEEKINKIRWCQTANNSLSLLSTNDKT 150          
BLAST of FC912495 vs. ExPASy Swiss-Prot
Match: 2ABA_SCHPO (Protein phosphatase PP2A regulatory subunit B OS=Schizosaccharomyces pombe GN=pab1 PE=1 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 7.740e-34
Identity = 71/122 (58.20%), Postives = 89/122 (72.95%), Query Frame = 2
Query:  503 EWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKT 868
            +WKF+Q FG++   E++ E DIISA+EFD +GD+LATGD+GGRVVLFER  ++                 +  E+++ TEFQSHEPEFDYLKSLEIEEKINKIRWC+  N A +LLSTNDKT
Sbjct:   10 QWKFAQCFGDKGDVEDITEADIISAVEFDHTGDYLATGDKGGRVVLFERNHSK-----------------KGCEYKFFTEFQSHEPEFDYLKSLEIEEKINKIRWCKRTNRAHFLLSTNDKT 114          
BLAST of FC912495 vs. ExPASy Swiss-Prot
Match: PH2AB_DICDI (Serine/threonine-protein phosphatase 2A regulatory subunit phr2AB OS=Dictyostelium discoideum GN=phr2AB PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.236e-31
Identity = 64/125 (51.20%), Postives = 90/125 (72.00%), Query Frame = 2
Query:  494 QPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKT 868
            +PL+W+FSQ FG +   E+  + +++ AIEFD++GD +A GD+GG+V+L +RT  + +  +           S+ PE+R+ +EFQSHEPEFDYLKSLEIEEKINKI+WC   N A +LL+TNDKT
Sbjct:    3 EPLDWRFSQTFGGK-GNEDASDANVVPAIEFDQTGDFIAVGDKGGKVLLLKRTHDKQSSKK-----------SKLPEYRFYSEFQSHEPEFDYLKSLEIEEKINKIKWCPKQNDAQFLLTTNDKT 115          
BLAST of FC912495 vs. ExPASy Swiss-Prot
Match: 2ABD_MOUSE (Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform OS=Mus musculus GN=Ppp2r2d PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.510e-29
Identity = 72/134 (53.73%), Postives = 86/134 (64.18%), Query Frame = 2
Query:  467 GGGSSEAAAQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKT 868
            GGG   A     +W FSQV G     E+V E DIIS +EF+ SGD LATGD+GGRVV+F+R   ++N G+               E+   + FQSHEPEFDYLKSLEIEEKINKIRW    N+A +LLSTNDKT
Sbjct:    5 GGGGCPAGGNDFQWCFSQVKG--AVDEDVAEADIISTVEFNYSGDLLATGDKGGRVVIFQRE--QENKGRAHS----------RGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQQNAAHFLLSTNDKT 124          
BLAST of FC912495 vs. ExPASy Swiss-Prot
Match: 2ABA_CANTR (Protein phosphatase PP2A regulatory subunit B OS=Candida tropicalis GN=CDC55 PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.973e-29
Identity = 67/119 (56.30%), Postives = 83/119 (69.75%), Query Frame = 2
Query:  512 FSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKT 868
            FSQ FG++   E + E DIIS +EFD +GD LATGD+GGRVVLFER  ++                 +  E+++ TEFQSH+ EFDYLKSLEIEEKINKI+W +SAN +L LLSTNDKT
Sbjct:    5 FSQCFGDKGDIENITEADIISTVEFDHTGDFLATGDKGGRVVLFERNQSKKK---------------QSCEYKFFTEFQSHDAEFDYLKSLEIEEKINKIKWLKSANDSLCLLSTNDKT 108          
BLAST of FC912495 vs. ExPASy Swiss-Prot
Match: 2ABD_HUMAN (Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform OS=Homo sapiens GN=PPP2R2D PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 3.365e-29
Identity = 71/134 (52.99%), Postives = 83/134 (61.94%), Query Frame = 2
Query:  467 GGGSSEAAAQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKT 868
            GGG   A     +W FSQV G     E+V E DIIS +EF+ SGD LATGD+GGRVV+F+R     +    R             E+   + FQSHEPEFDYLKSLEIEEKINKIRW    N+A +LLSTNDKT
Sbjct:    5 GGGGCPAGGNDFQWCFSQVKG--AIDEDVAEADIISTVEFNYSGDLLATGDKGGRVVIFQREQENKSRPHSRG------------EYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQQNAAHFLLSTNDKT 124          
The following BLAST results are available for this feature:
BLAST of FC912495 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
2ABB_ARATH4.814e-6083.21Serine/threonine protein phosphatase 2A 55 kDa reg... [more]
2ABA_ARATH1.110e-5679.14Serine/threonine protein phosphatase 2A 55 kDa reg... [more]
2ABB_ORYSJ5.508e-5683.20Serine/threonine protein phosphatase 2A 55 kDa reg... [more]
2ABB_ORYSI5.508e-5683.20Serine/threonine protein phosphatase 2A 55 kDa reg... [more]
2ABA_ORYSJ7.954e-5576.87Serine/threonine protein phosphatase 2A 55 kDa reg... [more]
2ABA_SCHPO7.740e-3458.20Protein phosphatase PP2A regulatory subunit B OS=S... [more]
PH2AB_DICDI1.236e-3151.20Serine/threonine-protein phosphatase 2A regulatory... [more]
2ABD_MOUSE1.510e-2953.73Serine/threonine-protein phosphatase 2A 55 kDa reg... [more]
2ABA_CANTR1.973e-2956.30Protein phosphatase PP2A regulatory subunit B OS=C... [more]
2ABD_HUMAN3.365e-2952.99Serine/threonine-protein phosphatase 2A 55 kDa reg... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA45DA05RM1 IVIA1 Citrus clementina cDNA clone IC0AAA45DA05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC912495 ID=FC912495; Name=FC912495; organism=Citrus clementina; type=EST; length=869bp
CAATAGCATTTCCTGCTCCGTCATTATCTTCCAATCTCCATTTTTTCTAC
TCTCTGAAATAAAAAAGAAAAAAAGGCGAAACAAAAAGAAATTACTAGTA
CAGTGTGAAAATCTCAATCGACGTTCAATCTGTGCTCTATCTATATAGCA
AGCGTACGATGTCGATGTGAAAAAATTTCATCGATTTCCATTTTCTAGAG
AGAGAAAGCGGAATCTAAATTTAGAGAGAGAAAAAGAGTGAGTGAGTGTT
TCCTGTTGTTGAAATCTGGCTCTCTGGAGTGCTTGTATTTACGGTTCGTC
ATGGTTCGATTAATCGACGAGCTCGCCTTATCGTTTGTTTTAAATCGGTG
ATGAGATTGTACAAGTTTCAGATCGATTCCGTTTGGATGCATTAAAATTG
AGTTGGTGTTTTTATTTTTCATTTTTCTTCTTCTGGATTTCTCTTATTGT
GAAAGAAATGGACAACGGCGGCGGCTCCTCCGAAGCCGCGGCTCAGCCGC
TCGAGTGGAAATTCTCGCAAGTGTTCGGAGAACGGACTGCTGGAGAGGAA
GTGCAGGAAGTTGATATCATATCCGCTATTGAATTTGATAAATCTGGTGA
TCACCTTGCTACTGGAGATCGTGGGGGCCGAGTGGTTTTATTTGAGAGAA
CTGACACACGAGATAATGGTGGACAACGGAGAGATCTAGAGATGATGGAT
TATTCAATGAGCAGGCACCCTGAGTTCCGGTATAAAACAGAGTTTCAAAG
CCATGAGCCTGAGTTTGATTATCTAAAGAGCTTGGAGATTGAAGAGAAGA
TCAACAAGATTAGATGGTGCCAGTCAGCTAATAGTGCCCTGTATCTCCTG
TCCACTAACGACAAGACTA
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