FC914202

Overview
NameFC914202
Unique NameFC914202
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length916
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC914202 vs. ExPASy Swiss-Prot
Match: UGPI7_ARATH (Uncharacterized GPI-anchored protein At4g28100 OS=Arabidopsis thaliana GN=At4g28100 PE=1 SV=1)

HSP 1 Score: 384.8 bits (987), Expect = 3.697e-106
Identity = 193/257 (75.10%), Postives = 213/257 (82.88%), Query Frame = 3 
Query:   75 EYASTNTVPAFPAQTQAATCRLDLSAELFGGVNEACGRDLDRSRCCPVLAAWLFAAHSRYALQVXXXXXXXXXXXXXXXXX---SQKCVNSLQSALVSKNVKIPQPNASCDAILCFCGIRLHQISSLSCPAAFNVTAGFRNVTPTAAVKNLEKNCRNSSYSGCTKCLGALQKLK--GGSKNGTAEHEDNRASKMFSRDCQLMGLTWLLARNKTAYIPTVSAVLRAIMYSSHPPHESKCSPDQENMPLAVDSLQFEKT 830
            E    NTVPAFP +TQA +CRLDLS ELFGGVNEACGR+LDRSRCCPVLAAWLFAAH+R ALQ+                    SQKCVN+LQSAL++K +KIPQPN+SCDAILCFCGIRLHQISSLSCPAAFNV++GF+N TPTAAVKNLEK CRNSSYSGCT+CLGALQKLK  GG+K  T E    R +KM S+DCQLMGLTWLLARNKTAYIPTVSAVLRAIMYS HPPH +KCSPDQENMPLAVDSLQF+K+
Sbjct:   27 EPVQPNTVPAFPVETQAQSCRLDLSNELFGGVNEACGRNLDRSRCCPVLAAWLFAAHARSALQLPAPAPTPESSDPDEPMKPDDSQKCVNTLQSALLTKQIKIPQPNSSCDAILCFCGIRLHQISSLSCPAAFNVSSGFKNATPTAAVKNLEKECRNSSYSGCTRCLGALQKLKVRGGNKKTTTE----RGTKMMSKDCQLMGLTWLLARNKTAYIPTVSAVLRAIMYSPHPPHLNKCSPDQENMPLAVDSLQFQKS 279
The following BLAST results are available for this feature:
BLAST of FC914202 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
UGPI7_ARATH3.697e-10675.10Uncharacterized GPI-anchored protein At4g28100 OS=... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA10BC06RM1 IVIA1 Citrus clementina cDNA clone IC0AAA10BC06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC914202 ID=FC914202; Name=FC914202; organism=Citrus clementina; type=EST; length=916bp
CCGCTTTTCATCTCTCATTTGCCGGTTTACTTGCCGAACCGGCATCCGGT
CACGACCAACCGTTGAAACCTGGAGAGTACGCGTCCACCAACACGGTCCC
AGCGTTCCCGGCCCAGACCCAGGCAGCCACCTGCCGGCTCGACCTCTCCG
CCGAGCTTTTCGGCGGGGTTAATGAAGCATGCGGCCGTGACCTTGACCGG
AGCCGGTGCTGTCCCGTACTAGCGGCTTGGCTGTTCGCGGCTCACTCCCG
GTACGCTCTCCAGGTCCCGGCGGCGGCTCCAGCCGCTGAGCCGGACCAAC
CCATGATGCCTGATGACTCGCAGAAGTGCGTCAACTCGCTGCAAAGCGCT
TTGGTGAGCAAGAACGTGAAGATTCCGCAACCCAATGCGAGTTGCGATGC
GATTCTGTGTTTTTGTGGGATTAGGCTTCATCAAATCAGCTCGCTTAGCT
GCCCGGCTGCGTTTAATGTGACTGCCGGCTTTCGAAATGTGACGCCCACT
GCTGCTGTTAAAAATCTGGAGAAGAATTGCAGAAATTCTTCGTACTCAGG
CTGTACTAAATGCCTTGGTGCACTTCAAAAGCTAAAAGGCGGGAGCAAGA
ACGGAACAGCAGAACACGAAGACAACAGGGCAAGCAAGATGTTCAGCAGG
GACTGCCAGCTGATGGGGCTGACGTGGCTCCTGGCGCGCAACAAAACGGC
GTACATCCCCACCGTTTCAGCGGTGTTGCGGGCCATAATGTACAGCTCGC
ACCCACCTCACGAGTCCAAGTGCAGCCCTGATCAAGAGAACATGCCCTTG
GCCGTTGATTCTCTTCAGTTCGAAAAAACCCAATCTTCATCGTCTTCACC
ATCACGGCCGCAAAATGTTCGTGCTGTTTTAGTTCCATTTTTTATCCTAA
TCATTTTGTTTTCTCT
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