FC916079

Overview
NameFC916079
Unique NameFC916079
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length850
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC916079 vs. ExPASy Swiss-Prot
Match: Y2734_ARATH (Uncharacterized protein At2g17340 OS=Arabidopsis thaliana GN=At2g17340 PE=1 SV=1)

HSP 1 Score: 346.28 bits (887), Expect = 1.295e-94
Identity = 168/203 (82.76%), Postives = 185/203 (91.13%), Query Frame = 2
Query:  209 MESESELVPFPLLPTPIETNYRACTIPYRFPTDNPKKPTRTEIAWLDLFLNSIPSFKKRAESDPTVPDAHVRAEKFAQRYSEILEDMKKDPETHGGPPDCILLCRLREQVLRELGFRDIFKKVKDEENAKAISLFGDVVRLNDVIEDEGKRVESLIRGIFAGNIFDLGSAQLAEVFSRDGMSFLASCQNLVPRPWVIDDLVTF 817
            MES+SE+VPFP LP PIE NYRACTIPYRFP+D+PKK T  EI+W+++F NSIPSFKKRAESD TVPDA  RAEKFA+RY+ ILED+KKDPE+HGGPPD ILLCRLREQVLRELGFRDIFKKVKDEENAKAISLF  VV L+D IED+GKR+E+L+RGIFAGNIFDLGSAQLAEVFSRDGMSFLASCQNLVPRPWVIDDL  F
Sbjct:    1 MESDSEMVPFPQLPMPIENNYRACTIPYRFPSDDPKKATPNEISWINVFANSIPSFKKRAESDITVPDAPARAEKFAERYAGILEDLKKDPESHGGPPDGILLCRLREQVLRELGFRDIFKKVKDEENAKAISLFPQVVSLSDAIEDDGKRLENLVRGIFAGNIFDLGSAQLAEVFSRDGMSFLASCQNLVPRPWVIDDLENF 203          
BLAST of FC916079 vs. ExPASy Swiss-Prot
Match: PANK4_PONAB (Pantothenate kinase 4 OS=Pongo abelii GN=PANK4 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.119e-16
Identity = 56/156 (35.90%), Postives = 83/156 (53.21%), Query Frame = 2
Query:  341 WLDLFLNSIPSFKKRA-ESDPTVPDAHVRAEKFAQRYSEILEDMKKDPETHGGPPDCILLCRLREQVLRELGFRDIFKKVKDEENAKAISLFGDVVRLNDVIEDEGKRVESLIRGIFAGNIFDLGSAQLAEVFSRDG-MSFLASCQNLVPRPWVID 802
            WL  F  ++    KRA  S P   DA  RAEKF Q+Y   L+ +++ P  +G      LL   RE  L E  F D + KVK  EN  A+  F  VVR  D +  E +++ +L++G+ AGN+FD G+  +++V   D    F  + + L  RPW++D
Sbjct:  448 WLTCFEEALDGVVKRAVASQPDSVDAAERAEKFRQKYWNKLQTLRQQPFAYGTLTVRSLL-DTREHCLNEFNFPDPYSKVKQRENGVALRCFPGVVRSLDALGWEERQL-ALVKGLLAGNVFDWGAKAVSDVLESDPCFGFEEAKRKLQERPWLVD 601          
BLAST of FC916079 vs. ExPASy Swiss-Prot
Match: PANK4_MACFA (Pantothenate kinase 4 OS=Macaca fascicularis GN=PANK4 PE=2 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 4.119e-16
Identity = 56/156 (35.90%), Postives = 83/156 (53.21%), Query Frame = 2
Query:  341 WLDLFLNSIPSFKKRA-ESDPTVPDAHVRAEKFAQRYSEILEDMKKDPETHGGPPDCILLCRLREQVLRELGFRDIFKKVKDEENAKAISLFGDVVRLNDVIEDEGKRVESLIRGIFAGNIFDLGSAQLAEVFSRDG-MSFLASCQNLVPRPWVID 802
            WL  F  ++    KRA  S P   DA  RAEKF Q+Y   L+ +++ P  +G      LL   RE  L E  F D + KVK  EN  A+  F  VVR  D +  E +++ +L++G+ AGN+FD G+  +++V   D    F  + + L  RPW++D
Sbjct:  448 WLTCFEEALDGVVKRAVASQPDSVDAAERAEKFRQKYWNKLQTLRQQPFAYGTLTVRSLL-DTREHCLNEFNFPDPYSKVKQRENGVALRCFPGVVRSLDTLGWEERQL-ALVKGLLAGNVFDWGAKAVSDVLESDPYFGFEEAKRKLQERPWLVD 601          
BLAST of FC916079 vs. ExPASy Swiss-Prot
Match: PANK4_HUMAN (Pantothenate kinase 4 OS=Homo sapiens GN=PANK4 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 9.175e-16
Identity = 56/156 (35.90%), Postives = 82/156 (52.56%), Query Frame = 2
Query:  341 WLDLFLNSIPSFKKRA-ESDPTVPDAHVRAEKFAQRYSEILEDMKKDPETHGGPPDCILLCRLREQVLRELGFRDIFKKVKDEENAKAISLFGDVVRLNDVIEDEGKRVESLIRGIFAGNIFDLGSAQLAEVFSRDG-MSFLASCQNLVPRPWVID 802
            WL  F  ++    KRA  S P   DA  RAEKF Q+Y   L+ +++ P  +G      LL   RE  L E  F D + KVK  EN  A+  F  VVR  D +  E +++ +L++G+ AGN+FD G+  ++ V   D    F  + + L  RPW++D
Sbjct:  448 WLTCFEEALDGVVKRAVASQPDSVDAAERAEKFRQKYWNKLQTLRQQPFAYGTLTVRSLL-DTREHCLNEFNFPDPYSKVKQRENGVALRCFPGVVRSLDALGWEERQL-ALVKGLLAGNVFDWGAKAVSAVLESDPYFGFEEAKRKLQERPWLVD 601          
BLAST of FC916079 vs. ExPASy Swiss-Prot
Match: PANK4_RAT (Pantothenate kinase 4 OS=Rattus norvegicus GN=Pank4 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.670e-15
Identity = 55/156 (35.26%), Postives = 82/156 (52.56%), Query Frame = 2
Query:  341 WLDLFLNSIPSFKKRA-ESDPTVPDAHVRAEKFAQRYSEILEDMKKDPETHGGPPDCILLCRLREQVLRELGFRDIFKKVKDEENAKAISLFGDVVRLNDVIEDEGKRVESLIRGIFAGNIFDLGSAQLAEVFSRD-GMSFLASCQNLVPRPWVID 802
            WL  F  ++    KRA  S P   DA  RAEKF Q+Y   L+ ++  P  +G      LL   RE  L E  F D + KVK +EN  A+  F  V R  D +  E +++ +L++G+ AGN+FD G+  +++V   D    F  + + L  RPW++D
Sbjct:  448 WLTCFEEALDGVVKRAVASQPESVDAAERAEKFRQKYWGKLQTLRHQPFAYGTLTVRSLL-DTREHCLNEFNFPDPYSKVKQKENGLALKCFQSVTRSLDSLGWEERQL-ALVKGLLAGNVFDWGAKAVSDVLESDPQFGFEEAKRKLQERPWLVD 601          
BLAST of FC916079 vs. ExPASy Swiss-Prot
Match: PANK4_MOUSE (Pantothenate kinase 4 OS=Mus musculus GN=Pank4 PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 3.487e-15
Identity = 55/156 (35.26%), Postives = 82/156 (52.56%), Query Frame = 2
Query:  341 WLDLFLNSIPSFKKRA-ESDPTVPDAHVRAEKFAQRYSEILEDMKKDPETHGGPPDCILLCRLREQVLRELGFRDIFKKVKDEENAKAISLFGDVVRLNDVIEDEGKRVESLIRGIFAGNIFDLGSAQLAEVFSRD-GMSFLASCQNLVPRPWVID 802
            WL  F  ++    KRA  S P   DA  RAEKF Q+Y   L+ ++  P  +G      LL   RE  L E  F D + KVK +EN  A+  F  V R  D +  E +++ +L++G+ AGN+FD G+  +++V   D    F  + + L  RPW++D
Sbjct:  448 WLTCFEEALDGVVKRAVASQPESMDAVERAEKFRQKYWGKLQTLRHQPFAYGTLTVRSLL-DTREHCLNEFNFPDPYSKVKQKENGLALKCFQSVTRSLDSLGWEERQL-ALVKGLLAGNVFDWGAKAVSDVLESDPQFGFEEAKRKLQERPWLVD 601          
BLAST of FC916079 vs. ExPASy Swiss-Prot
Match: PANK2_ARATH (Pantothenate kinase 2 OS=Arabidopsis thaliana GN=At4g32180 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 9.495e-13
Identity = 48/161 (29.81%), Postives = 81/161 (50.31%), Query Frame = 2
Query:  341 WLDLFLNSIPSFKKRA-ESDPTVPDAHVRAEKFAQRYSEILEDMKKDPETHGGPPDCILLCRLREQVLRELGFRDIFKKVKDEENAKAISLFGDVVRLNDVIEDEGKRVESLIRGIFAGNIFDLGSAQLAEVFSRDG-MSFLASCQNLVPRPWVIDDLVTF 817
            WL +    +P     A  S+    DA  R + FA+ +S  L  + ++P  +G      LL  LRE+ LRE  F D ++ +K  EN  ++++  D++   D + +E  R+ +LI G+ A NIFD GS    +++ +   +      +N + RPW +DD   F
Sbjct:  519 WLKVLSEHLPDLVDTAVASEGGTEDAKRRGDAFARAFSAHLARLMEEPAAYGKLGLANLL-ELREECLREFQFVDAYRSIKQRENEASLAVLPDLLEELDSMSEEA-RLLTLIEGVLAANIFDWGSRACVDLYHKGTIIEIYRMSRNKMQRPWRVDDFDAF 677          
The following BLAST results are available for this feature:
BLAST of FC916079 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
Y2734_ARATH1.295e-9482.76Uncharacterized protein At2g17340 OS=Arabidopsis t... [more]
PANK4_PONAB4.119e-1635.90Pantothenate kinase 4 OS=Pongo abelii GN=PANK4 PE=... [more]
PANK4_MACFA4.119e-1635.90Pantothenate kinase 4 OS=Macaca fascicularis GN=PA... [more]
PANK4_HUMAN9.175e-1635.90Pantothenate kinase 4 OS=Homo sapiens GN=PANK4 PE=... [more]
PANK4_RAT2.670e-1535.26Pantothenate kinase 4 OS=Rattus norvegicus GN=Pank... [more]
PANK4_MOUSE3.487e-1535.26Pantothenate kinase 4 OS=Mus musculus GN=Pank4 PE=... [more]
PANK2_ARATH9.495e-1329.81Pantothenate kinase 2 OS=Arabidopsis thaliana GN=A... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA36DF06RM1 IVIA1 Citrus clementina cDNA clone IC0AAA36DF06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC916079 ID=FC916079; Name=FC916079; organism=Citrus clementina; type=EST; length=850bp
AAGAGAGAGAGAGAGAGAGAGAGAGAGAGGATTTGGGCGGTCGCAGACGC
AGAGCTCGGCCCCCAAGACAACGGAATCCATTCTCAGCAGACCAACTTGA
GAGGATAGCTGTTGTCTTGCCATTCTCTCCCTTTTTTTCTATACATATAA
TAAGTCAGCTGCTTCGCATTTTGTTTCTTCATTCTTCATTTCATTCATTC
CGCAAGAAATGGAGAGTGAATCGGAGCTTGTTCCATTCCCACTGCTTCCG
ACTCCGATCGAAACAAACTACAGGGCATGCACAATTCCGTACAGATTCCC
AACTGACAATCCCAAAAAGCCTACTCGTACTGAGATTGCTTGGCTCGACC
TCTTCCTCAATTCTATTCCTTCTTTCAAGAAGCGAGCTGAGAGTGATCCC
ACTGTGCCTGATGCTCACGTCAGAGCTGAGAAATTTGCTCAAAGGTATTC
AGAGATACTTGAGGACATGAAGAAAGATCCAGAAACTCATGGTGGACCAC
CTGATTGCATTCTTCTTTGCCGACTTCGTGAGCAAGTCCTTAGAGAATTG
GGCTTCAGAGATATATTCAAGAAAGTCAAGGATGAAGAGAATGCAAAGGC
TATATCCTTATTTGGGGATGTGGTTCGTCTTAACGATGTTATCGAAGATG
AAGGCAAGCGCGTAGAGAGCCTGATCAGAGGAATATTTGCTGGAAACATA
TTTGATCTTGGTTCAGCACAGCTTGCTGAGGTCTTCTCAAGGGACGGTAT
GTCCTTTTTGGCTAGTTGTCAAAATCTTGTGCCCCGGCCTTGGGTTATTG
ATGACTTGGTGACCTTTAAAGTGAAATGGAGCAAGAAAGCTTGGAAGAAG
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