FC916153
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC916153 vs. ExPASy Swiss-Prot
Match: PP184_ARATH (Pentatricopeptide repeat-containing protein At2g34400 OS=Arabidopsis thaliana GN=PCMP-E23 PE=2 SV=2) HSP 1 Score: 95.9005 bits (237), Expect = 3.248e-19 Identity = 70/257 (27.24%), Postives = 112/257 (43.58%), Query Frame = 3 Query: 117 RIVHARALKSS-QADRSIYNNLITXXXXXXXXXXXXXXFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCXXXXXXXXXXXXXXXXXXXXXXHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGXXXXXXXXXXMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAM 884 R VH+ K + D I ++LI F+ I + VSW ++IS +S + + + + F P++RTL S+ C F GS L+ Y + D+A++VF+++ ++D V + AMI ++QN + ++ +F +M + V +S +E + I HA L N+ V TGL+D YGK G V +A RVF E + V N WNAM Sbjct: 152 RSVHSSLFKVGLERDVHINHSLIMMYAKCGQVGYARKLFDEITERDTVSWNSMISGYSEAGYAKDAMDLFRKMEEEGFEPDERTLVSMLGACSHLGDLRTGRLLEEMAITKKIGLST-FLGSKLISMYGKCGDLDSARRVFNQMIKKDRVAWTAMITVYSQNGKSSEAFKLFFEMEKTGVSPDAGTLSTVLSACGSVGALELGKQIETHASELSLQHNIYVATGLVDMYGKCGRVEEALRVF-EAMPVKNEATWNAM 406
BLAST of FC916153 vs. ExPASy Swiss-Prot
Match: PP237_ARATH (Pentatricopeptide repeat-containing protein At3g16610 OS=Arabidopsis thaliana GN=PCMP-E91 PE=2 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 9.451e-19 Identity = 69/264 (26.14%), Postives = 119/264 (45.08%), Query Frame = 3 Query: 117 RIVHARALKSSQ--ADRSIYNNLITXXXXXXXXXXXXXXFNHIPSPNI--VSWTALISAHSNSPLS---LNIFLSMLRHPTLSFLPNQRTLASLFKTCXXXXXXXXXXXXXXXXXXXXXXHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD-VGSTMYCVSGXXXXXXXXXXMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAM 884 +++H LK S + ++ NL F+ IP P I ++W +I A++++ + L+++ ML P + T + K C D C +ALV FY++ + A KVFDE+ +RD+V + AMI GF+ + L D + +F DMR D + + + G + + + +HG+ G +++V TG++D Y K+ + ARRVFD + N + W+AM Sbjct: 19 QVIHQHLLKRSLTLSSSTVLVNLTRLYASCNEVELARHVFDEIPHPRINPIAWDLMIRAYASNDFAEKALDLYYKMLNS---GVRPTKYTYPFVLKACAGLRAIDDGKLIHSHVNCSDFATDMYVC-TALVDFYAKCGELEMAIKVFDEMPKRDMVAWNAMISGFSLHCCLTDVIGLFLDMRRIDGLSPNLSTIVGMFPALGRAGALREGKAVHGYCTRMGFSNDLVVKTGILDVYAKSKCIIYARRVFDLDFK-KNEVTWSAM 277
BLAST of FC916153 vs. ExPASy Swiss-Prot
Match: PP252_ARATH (Pentatricopeptide repeat-containing protein At3g24000, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H87 PE=2 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 6.126e-18 Identity = 66/257 (25.68%), Postives = 112/257 (43.58%), Query Frame = 3 Query: 117 RIVHARALKSS-QADRSIYNNLITXXXXXXXXXXXXXXFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCXXXXXXXXXXXXXXXXXXXXXXHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGXXXXXXXXXXMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAM 884 RIVHA L+S + D + N L+ F +P + V+WT LIS +S + L + + PN+ TL+S+ K + GSAL+ Y+R+ D+A+ VFD + R+ V + A+I G A+ S +L +F M + + + +EQ + +H + + SG G L+D Y K+G + DAR++FD L+ + ++WN++ Sbjct: 80 RIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNV-HVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFD-RLAKRDVVSWNSL 334
BLAST of FC916153 vs. ExPASy Swiss-Prot
Match: PPR8_ARATH (Pentatricopeptide repeat-containing protein At1g03540 OS=Arabidopsis thaliana GN=PCMP-E4 PE=2 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 8.000e-18 Identity = 71/262 (27.10%), Postives = 124/262 (47.33%), Query Frame = 3 Query: 126 HARALKSS-QADRSIYNNLITXXXXXXXXXXXXXX-FNHIPSPNIVSWTALISAHSNSP---LSLNIFLSMLRHPTLSFLPNQRTLASLFKTCXXXXXXXXXXXXXXXXXXXXXXHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS----DVGSTMYCVSGXXXXXXXXXXMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAM 884 HA +KS + DR++ N+L++ F+ + +SWT+++S + +L +F+ M+ + N+ TL+S K C + F S L + Y R P +A++VFDE+ E DV+C+ A++ F++N ++L +F M GST V ++Q + IHG + +G+ NV+V + L+D YGK G V +AR+VF+ +S NS++W+A+ Sbjct: 84 HAHVVKSGLETDRNVGNSLLSLYFKLGPGMRETRRVFDGRFVKDAISWTSMMSGYVTGKEHVKALEVFVEMV---SFGLDANEFTLSSAVKACSELGEVRLGRCFHGVVITHGFEWNH-FISSTLAYLYGVNREPVDARRVFDEMPEPDVICWTAVLSAFSKNDLYEEALGLFYAMHRGKGLVPDGSTFGTV---LTACGNLRRLKQGKEIHGKLITNGIGSNVVVESSLLDMYGKCGSVREARQVFN-GMSKKNSVSWSAL 337 HSP 2 Score: 90.1225 bits (222), Expect = 1.782e-17 Identity = 60/222 (27.03%), Postives = 104/222 (46.85%), Query Frame = 3 Query: 228 FNHIPSPNIVSWTALISAHSNSPL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCXXXXXXXXXXXXXXXXXXXXXXHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGXXXXXXXXXXMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAM 884 F+ +P P+++ WTA++SA S + L +L +F +M H +P+ T ++ C + S+L+ Y + S A++VF+ + +++ V + A++ G+ QN ++ +F +M D +YC + + IHG V G NVIV + LID YGK+G + A RV+ + +S+ N I WNAM Sbjct: 221 FDEMPEPDVICWTAVLSAFSKNDLYEEALGLFYAM--HRGKGLVPDGSTFGTVLTACGNLRRLKQGKEIHGKLITNGIGSNV-VVESSLLDMYGKCGSVREARQVFNGMSKKNSVSWSALLGGYCQNGEHEKAIEIFREMEEKD----LYCFGTVLKACAGLAAVRLGKEIHGQYVRRGCFGNVIVESALIDLYGKSGCIDSASRVYSK-MSIRNMITWNAM 434
BLAST of FC916153 vs. ExPASy Swiss-Prot
Match: PP210_ARATH (Pentatricopeptide repeat-containing protein At3g03580 OS=Arabidopsis thaliana GN=PCMP-H23 PE=2 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 1.045e-17 Identity = 63/217 (29.03%), Postives = 108/217 (49.77%), Query Frame = 3 Query: 240 PSPNIVSWTALISAHSNSPLSLNI--FLSMLRHPTLSFLPNQRTLASLFKTCXXXXXXXXXXXXXXXXXXXXXXHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGXXXXXXXXXXMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAM 884 P+ N+ W ++I A S + L F LR +S P++ T S+ K C D F G+ALV YSR A++VFDE+ RD+V + ++I G++ + ++L ++ ++++S + + VS ++Q + +HG A+ SG++ V+V GL+ Y K +DARRVFDE + V +S+++N M Sbjct: 67 PAKNVYLWNSIIRAFSKNGLFPEALEFYGKLRESKVS--PDKYTFPSVIKACAGLFDAEMGDLVYEQILDMGFESDL-FVGNALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLISGYSSHGYYEEALEIYHELKNSWIVPDSFTVSSVLPAFGNLLVVKQGQGLHGFALKSGVNSVVVVNNGLVAMYLKFRRPTDARRVFDE-MDVRDSVSYNTM 279
BLAST of FC916153 vs. ExPASy Swiss-Prot
Match: PP108_ARATH (Putative pentatricopeptide repeat-containing protein At1g68930 OS=Arabidopsis thaliana GN=PCMP-H22 PE=3 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 1.365e-17 Identity = 46/142 (32.39%), Postives = 79/142 (55.63%), Query Frame = 3 Query: 459 DKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGXXXXXXXXXXMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAM 884 D + GSAL+ Y + + AK VFD +++++VV + AM+VG+ Q R +++ +F DM+ S + Y + +E+ HG A+ SGL V V L+ YGK G + D+ R+F+E ++V ++++W AM Sbjct: 303 DHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISACANVSSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNE-MNVRDAVSWTAM 443
BLAST of FC916153 vs. ExPASy Swiss-Prot
Match: PP431_ARATH (Pentatricopeptide repeat-containing protein At5g55740, chloroplastic OS=Arabidopsis thaliana GN=CRR21 PE=2 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 2.328e-17 Identity = 63/255 (24.71%), Postives = 108/255 (42.35%), Query Frame = 3 Query: 123 VHARALKSSQ---ADRSIYNNLITXXXXXXXXXXXXXXFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCXXXXXXXXXXXXXXXXXXXXXXHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGXXXXXXXXXXMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWN 878 +HAR LK+ + I L+ F+ + N+ SW A+I L + + P+ + ++ K C D F S+L Y + D+A KVFDEI +R+ V + A++VG+ QN + +++ +F+DMR V T VS +E+ + H A+V+G++ + I+GT L++ Y K G++ A VFD + + + WN Sbjct: 92 IHARILKNGDFYARNEYIETKLVIFYAKCDALEIAEVLFSKLRVRNVFSWAAIIGVKCRIGLCEGALMGFVEMLENEIFPDNFVVPNVCKACGALKWSRFGRGVHGYVVKSGL-EDCVFVASSLADMYGKCGVLDDASKVFDEIPDRNAVAWNALMVGYVQNGKNEEAIRLFSDMRKQGVEPTRVTVSTCLSASANMGGVEEGKQSHAIAIVNGMELDNILGTSLLNFYCKVGLIEYAEMVFD-RMFEKDVVTWN 344
BLAST of FC916153 vs. ExPASy Swiss-Prot
Match: PP357_ARATH (Pentatricopeptide repeat-containing protein At4g39530 OS=Arabidopsis thaliana GN=PCMP-E52 PE=1 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 6.773e-17 Identity = 66/261 (25.29%), Postives = 116/261 (44.44%), Query Frame = 3 Query: 123 VHARALKSS-QADRSIYNNLITXXXXXXXXXXXXXXFNHIPSPNIVSWTALISAHSNSPL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCXXXXXXXXXXXXXXXXXXXXXXHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQ---NSRLVDSLSVFADMRSSDVGSTMYCVSGXXXXXXXXXXMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAM 884 +HA L+ + D S+ N LI FN +P+ NI+SWT L+S + + L ++ +F SM + P+ +S+ +C +D + ++L+ Y++ +A+KVFD DVV + AMI G+++ L ++L++F DMR + ++ + + IHG GL+ ++ G+ LID Y + D+R VFDE + V + + WN+M Sbjct: 271 IHAHILRYGLEMDASLMNVLIDSYVKCGRVIAAHKLFNGMPNKNIISWTTLLSGYKQNALHKEAMELFTSMSK---FGLKPDMYACSSILTSCASLHALGFGTQVHAYTIKANLGNDS-YVTNSLIDMYAKCDCLTDARKVFDIFAAADVVLFNAMIEGYSRLGTQWELHEALNIFRDMRFRLIRPSLLTFVSLLRASASLTSLGLSKQIHGLMFKYGLNLDIFAGSALIDVYSNCYCLKDSRLVFDE-MKVKDLVIWNSM 526 HSP 2 Score: 77.0258 bits (188), Expect = 1.561e-13 Identity = 66/260 (25.38%), Postives = 107/260 (41.15%), Query Frame = 3 Query: 120 IVHARALK-SSQADRSIYNNLITXXXXXXXXXXXXXXFNHIPSPNIVSWTALISA---HSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCXXXXXXXXXXXXXXXXXXXXXXHDKP-FCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGXXXXXXXXXXMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAM 884 +VH + + + D + N LI F +P N+VSW+ ++SA H SL +FL R T PN+ L+S + C D+ + G+ L+ FY + + D A+ VFD + E+ V + MI G + R SL +F + +V Y +S +E + IH H + GL+ + + LID Y K G V A ++F+ + N I+W + Sbjct: 65 VVHGQIIVWGLELDTYLSNILINLYSRAGGMVYARKVFEKMPERNLVSWSTMVSACNHHGIYEESLVVFLEFWR--TRKDSPNEYILSSFIQACSGLDGRGRWMVFQLQSFLVKSGFDRDVYVGTLLIDFYLKDGNIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEDNVVPDGYILSTVLSACSILPFLEGGKQIHAHILRYGLEMDASLMNVLIDSYVKCGRVIAAHKLFN-GMPNKNIISWTTL 321
BLAST of FC916153 vs. ExPASy Swiss-Prot
Match: PPR75_ARATH (Pentatricopeptide repeat-containing protein At1g50270 OS=Arabidopsis thaliana GN=PCMP-E42 PE=2 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 1.509e-16 Identity = 65/260 (25.00%), Postives = 107/260 (41.15%), Query Frame = 3 Query: 108 TDPRIVHARALKSS-QADRSIYNNLITXXXXXXXXXXXXXXFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCXXXXXXXXXXXXXXXXXXXXXXHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGXXXXXXXXXXMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAM 884 ++P HA +K +D + N+LI+ F+ ++V+WTA+I + + + + N+ T+ S+ K F GS+LV Y + D+A+KVFDE+ R+VV + A+I G+ Q+ + VF +M SDV +S + + R +H + + + ++ N GT LID Y K G + +A VF E L N W AM Sbjct: 120 SNPFQFHAHIVKFGLDSDPFVRNSLISGYSSSGLFDFASRLFDGAEDKDVVTWTAMIDGFVRNGSASEAMVYFVEMKKTGVAANEMTVVSVLKAAGKVEDVRFGRSVHGLYLETGRVKCDVFIGSSLVDMYGKCSCYDDAQKVFDEMPSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKSDVAPNEKTLSSVLSACAHVGALHRGRRVHCYMIKNSIEINTTAGTTLIDLYVKCGCLEEAILVF-ERLHEKNVYTWTAM 378
BLAST of FC916153 vs. ExPASy Swiss-Prot
Match: PPR32_ARATH (Pentatricopeptide repeat-containing protein At1g11290 OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 3.361e-16 Identity = 62/222 (27.93%), Postives = 96/222 (43.24%), Query Frame = 3 Query: 228 FNHIPSPNIVSWTALISAH---SNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCXXXXXXXXXXXXXXXXXXXXXXHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGXXXXXXXXXXMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAM 884 F+ + N+VSW ++I A+ N ++ IF ML P ++ C + S L+ Y + + D A +F +++ R +V + AMI+GFAQN R +D+L+ F+ MRS V + + IHG + S LD+NV V T L+D Y K G + AR +FD +S + WNAM Sbjct: 294 FDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDE---GVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNVSVVNS-LISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFD-MMSERHVTTWNAM 510 HSP 2 Score: 75.485 bits (184), Expect = 4.543e-13 Identity = 41/139 (29.50%), Postives = 72/139 (51.80%), Query Frame = 3 Query: 468 FCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGXXXXXXXXXXMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAM 884 F + L + Y++ R + A+KVFD + ERD+V + ++ G++QN +L + M ++ + + + + IHG+A+ SG D V + T L+D Y K G + AR++FD L N ++WN+M Sbjct: 171 FAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLE-RNVVSWNSM 308 HSP 3 Score: 70.0922 bits (170), Expect = 1.909e-11 Identity = 46/136 (33.82%), Postives = 69/136 (50.74%), Query Frame = 3 Query: 477 SALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGXXXXXXXXXXMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAM 884 +ALV Y++ S + A+++FD + ER+VV + +MI + QN +++ +F M V T V G +E+ R IH +V GLDRNV V LI Y K V A +F + L ++WNAM Sbjct: 275 TALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGK-LQSRTLVSWNAM 409 The following BLAST results are available for this feature:
BLAST of FC916153 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 74
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC916153 ID=FC916153; Name=FC916153; organism=Citrus clementina; type=EST; length=886bpback to top |