FC917060

Overview
NameFC917060
Unique NameFC917060
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length819
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC917060 vs. ExPASy Swiss-Prot
Match: PHOT1_ARATH (Phototropin-1 OS=Arabidopsis thaliana GN=PHOT1 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.333e-15
Identity = 45/93 (48.39%), Postives = 56/93 (60.22%), Query Frame = 2 
Query:  509 EKSPKQSSKACESPLSRDSRGSLEVFNPSTFSTRPTNPVFRPQ-PTWQTWMEQR---ESPEPEHAKLNSKSSRAEE----ITSWMALKDPAPQ 763
            E + K S+K     L RD+RGSLEVFNPST  TRP NPVFRP+ P WQ   + R     P P+     S   R+++     TSWMALKDP+P+
Sbjct:    2 EPTEKPSTKPSSRTLPRDTRGSLEVFNPSTQLTRPDNPVFRPEPPAWQNLSDPRGTSPQPRPQQEPAPSNPVRSDQEIAVTTSWMALKDPSPE 94
The following BLAST results are available for this feature:
BLAST of FC917060 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PHOT1_ARATH7.333e-1548.39Phototropin-1 OS=Arabidopsis thaliana GN=PHOT1 PE=... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA42CE12RM1 IVIA1 Citrus clementina cDNA clone IC0AAA42CE12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC917060 ID=FC917060; Name=FC917060; organism=Citrus clementina; type=EST; length=819bp
CTCTTCTGATTATCCTTTTTTTTCTCGTTTTTGTTTTTGTTCCTTTTCTT
GTTGCCAACCCATTTCCACTCTGTAAAAGTATAGCAGAAATCTATCGGTA
TGGTTGAATGATCTTATGTTGATACCCACAAAAAAAACAAAAAAAAAAAC
AATAATTATGTTTTCTGGAAGCATTTTTAATGTTTCATGATTGATCCCAG
TATGGAGATACGAGCTTTGCAAAATAATAGCCATGTGAGTTTCAGGTGTG
CAGGGAATGGGAAGCCAAAACCTTTTCAACAATCATTCTTTCTTCTGTTT
TGATCTTTTCTCAGTCTTTTTCCCATTATAAAGCTCTTTCTTTTACATTA
TCTTCTCGTCGCCTTCAGTAACTTGAGTCCTCTACATATATATTTACTTT
GTCAAAAGTGCTTTCAGCAGCTCGTTTTGCTCAAAAACCCAACCCTAAAA
CAAAGAATTGAATCATCTACCGGTCTCAGCTTCAATTATCAGAGAAATGG
ATCAATCAGAAAAATCACCCAAGCAATCATCTAAGGCGTGCGAGTCACCT
TTGTCGAGAGACTCTCGTGGGTCCCTCGAAGTTTTTAACCCATCAACTTT
CTCGACCCGACCGACCAACCCTGTGTTTCGCCCACAACCCACATGGCAGA
CTTGGATGGAGCAACGAGAGAGCCCGGAACCCGAACACGCCAAGCTCAAC
TCCAAGTCGAGCCGGGCCGAAGAAATAACTTCATGGATGGCCCTCAAGGA
CCCTGCTCCACAGAAGCCATCGCTACCACCATTGATCCAAAAAATGACCA
ATGATCAAGAAAAATCAAC
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