FC917061

Overview
NameFC917061
Unique NameFC917061
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length895
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC917061 vs. ExPASy Swiss-Prot
Match: GLGL3_ARATH (Glucose-1-phosphate adenylyltransferase large subunit 3, chloroplastic OS=Arabidopsis thaliana GN=APL3 PE=2 SV=2)

HSP 1 Score: 328.176 bits (840), Expect = 3.976e-89
Identity = 160/210 (76.19%), Postives = 176/210 (83.81%), Query Frame = 2
Query:    8 KQLKKSLKAEK-RDEKVKPGVAYAVMTSKHPNEVMTLAPPRLERRRVDPKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGE 634
            K     L ++K R+ K++PGVAYA+ TSK+  E +   P   ERRR DPKNVAAIILGGG G KLFPLT RAATPAVPV GCYR+IDIPMSNCINS INKIFVLTQFNSASLNRH+ARTYFGNG NFGDGFVEVLAATQTPGE+GK WFQGTADAVR+F WVFEDAKNRNIEN+ IL GDHLYRM+YMDF+Q HVD  ADIT+SCA V E
Sbjct:   38 KPFSSDLSSKKFRNRKLRPGVAYAIATSKNAKEALKNQPSMFERRRADPKNVAAIILGGGDGAKLFPLTKRAATPAVPVGGCYRMIDIPMSNCINSCINKIFVLTQFNSASLNRHLARTYFGNGINFGDGFVEVLAATQTPGEAGKKWFQGTADAVRKFLWVFEDAKNRNIENIIILSGDHLYRMNYMDFVQHHVDSKADITLSCAPVDE 247          
BLAST of FC917061 vs. ExPASy Swiss-Prot
Match: GLGL4_ARATH (Probable glucose-1-phosphate adenylyltransferase large subunit, chloroplastic OS=Arabidopsis thaliana GN=At2g21590 PE=2 SV=1)

HSP 1 Score: 326.635 bits (836), Expect = 1.157e-88
Identity = 160/210 (76.19%), Postives = 179/210 (85.24%), Query Frame = 2
Query:    8 KQLKKSLKAEK-RDEKVKPGVAYAVMTSKHPNEVMTLAPPRLERRRVDPKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGE 634
            K+    L ++K R++K K GV YAV TS +P + MT+     ERR+VDP+NVAAIILGGG G KLFPLT+RAATPAVPV GCYRLIDIPMSNCINS INKIFVLTQFNSASLNRH+ARTYFGNG NFG GFVEVLAATQTPGE+GK WFQGTADAVR+F WVFEDAKNRNIEN+ IL GDHLYRM+YMDF+QSHVD +ADIT+SCA V E
Sbjct:   40 KRFGSDLGSKKFRNQKFKHGVVYAVATSDNPKKAMTVKTSMFERRKVDPQNVAAIILGGGNGAKLFPLTMRAATPAVPVGGCYRLIDIPMSNCINSCINKIFVLTQFNSASLNRHLARTYFGNGINFGGGFVEVLAATQTPGEAGKKWFQGTADAVRKFLWVFEDAKNRNIENILILSGDHLYRMNYMDFVQSHVDSNADITLSCAPVSE 249          
BLAST of FC917061 vs. ExPASy Swiss-Prot
Match: GLGL1_SOLTU (Glucose-1-phosphate adenylyltransferase large subunit 1 (Fragment) OS=Solanum tuberosum GN=AGPS1 PE=2 SV=1)

HSP 1 Score: 318.931 bits (816), Expect = 2.412e-86
Identity = 147/191 (76.96%), Postives = 172/191 (90.05%), Query Frame = 2
Query:   50 KVKPGVAYAVMTSKHPNEVMTLAPPRLERRRVDPKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCA 622
            K+KPGVAY+V+T+++  + + +  PRLERRR +PK+VAA+ILGGG GTKLFPLT R ATPAVPV GCYRLIDIPMSNCINS INKIFVLTQ+NSA LNRHIARTYFGNG +FGDGFVEVLAATQTPGE+GK WFQGTADAVR+F WVFEDAKN+NIEN+ +L GDHLYRMDYM+ +Q+H+DR+ADIT+SCA
Sbjct:    2 KIKPGVAYSVITTENDTQTVFVDMPRLERRRANPKDVAAVILGGGEGTKLFPLTSRTATPAVPVGGCYRLIDIPMSNCINSAINKIFVLTQYNSAPLNRHIARTYFGNGVSFGDGFVEVLAATQTPGEAGKKWFQGTADAVRKFIWVFEDAKNKNIENIVVLSGDHLYRMDYMELVQNHIDRNADITLSCA 192          
BLAST of FC917061 vs. ExPASy Swiss-Prot
Match: GLGL1_BETVU (Glucose-1-phosphate adenylyltransferase large subunit, chloroplastic/amyloplastic OS=Beta vulgaris GN=AGPS1 PE=2 SV=1)

HSP 1 Score: 283.878 bits (725), Expect = 8.599e-76
Identity = 135/192 (70.31%), Postives = 158/192 (82.29%), Query Frame = 2
Query:   56 KPGVAYAVMTS---KHPNEVMTLAPPRLERRRVDPKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISC 619
            KPGVA++V+TS   +   E +   P   E  + DPKNVAAI+LGGGAGT+LFPLT R A PAVP+ GCYRLID+PMSNCINSGI KIF+LTQFNS SLNRH+ARTY FG+G NFGDGFVEV AATQTPGESGK WFQGTADAVRQF W FED+K++++E++ IL GDHLYRMDYM F Q H+D +ADIT+SC
Sbjct:   52 KPGVAFSVLTSDFNQSVKESLKYEPALFESPKADPKNVAAIVLGGGAGTRLFPLTSRRAKPAVPIGGCYRLIDVPMSNCINSGIRKIFILTQFNSFSLNRHLARTYNFGDGVNFGDGFVEVFAATQTPGESGKKWFQGTADAVRQFFWAFEDSKSKDVEHIVILSGDHLYRMDYMSFWQKHIDTNADITVSC 243          
BLAST of FC917061 vs. ExPASy Swiss-Prot
Match: GLGL2_ARATH (Glucose-1-phosphate adenylyltransferase large subunit 2, chloroplastic OS=Arabidopsis thaliana GN=APL2 PE=2 SV=2)

HSP 1 Score: 274.633 bits (701), Expect = 5.217e-73
Identity = 128/172 (74.42%), Postives = 148/172 (86.05%), Query Frame = 2
Query:  122 PRLERRRVDPKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGE 634
            P L  +  DPKNVA+IILGGGAGT+LFPLT + A PAVP+ GCYRLIDIPMSNCINSGI KIF+LTQFNS SLNRH++RTY FGNG NFGDGFVEVLAATQT G++GK WFQGTADAVRQF WVFEDAK +N+E+V IL GDHLYRMDYM+F+Q H++ +ADIT+SC  + E
Sbjct:   73 PLLRTQNADPKNVASIILGGGAGTRLFPLTSKRAKPAVPIGGCYRLIDIPMSNCINSGIRKIFILTQFNSFSLNRHLSRTYNFGNGVNFGDGFVEVLAATQTSGDAGKKWFQGTADAVRQFIWVFEDAKTKNVEHVLILSGDHLYRMDYMNFVQKHIESNADITVSCLPMDE 244          
BLAST of FC917061 vs. ExPASy Swiss-Prot
Match: GLGL1_ARATH (Glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic OS=Arabidopsis thaliana GN=ADG2 PE=1 SV=3)

HSP 1 Score: 264.233 bits (674), Expect = 7.051e-70
Identity = 123/170 (72.35%), Postives = 144/170 (84.71%), Query Frame = 2
Query:  128 LERRRVDPKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGER 637
            LE  + DP+ VA+IILGGGAGT+LFPLT R A PAVP+ G YRLID+PMSNCINSGINK+++LTQ+NSASLNRH+AR Y  NG  FGDG+VEVLAATQTPGESGK WFQGTADAVRQF W+FEDA++++IE+V IL GDHLYRMDYMDFIQ H    ADI+ISC  + +R
Sbjct:   80 LETEKRDPRTVASIILGGGAGTRLFPLTKRRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNSNGLGFGDGYVEVLAATQTPGESGKRWFQGTADAVRQFHWLFEDARSKDIEDVLILSGDHLYRMDYMDFIQDHRQSGADISISCIPIDDR 249          
BLAST of FC917061 vs. ExPASy Swiss-Prot
Match: GLGL2_SOLTU (Glucose-1-phosphate adenylyltransferase large subunit 2, chloroplastic/amyloplastic OS=Solanum tuberosum GN=AGPS2 PE=2 SV=1)

HSP 1 Score: 253.447 bits (646), Expect = 1.245e-66
Identity = 124/206 (60.19%), Postives = 151/206 (73.30%), Query Frame = 2
Query:   20 KSLKAEKRDEKVKPGVAYAVMTSKHPNEVMTLAPPRLERR-RVDPKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGE 634
            KS   ++R   V P    AV+T     E++       E +   DPK VA++ILGGG GT+LFPLT R A PAVP+ GCYRLID+PMSNCINSGI KIF+LTQFNS SLNRH+A   FGNG  FGDGFVEVLA TQTPG+  K WFQ  ADAVR+F WVFE+ KN+N+E++ IL GDHLYRM+YMDF+Q H+D +ADIT+SC  + +
Sbjct:   45 KSFTTQQRGRNVTP----AVLTRDINKEMLPFEESMFEEQPTADPKAVASVILGGGVGTRLFPLTSRRAKPAVPIGGCYRLIDVPMSNCINSGIRKIFILTQFNSFSLNRHLATYNFGNGVGFGDGFVEVLAGTQTPGDGRKMWFQ-AADAVREFIWVFENQKNKNVEHIIILSGDHLYRMNYMDFVQKHIDTNADITVSCVPMDD 245          
BLAST of FC917061 vs. ExPASy Swiss-Prot
Match: GLGL2_WHEAT (Glucose-1-phosphate adenylyltransferase large subunit, chloroplastic/amyloplastic OS=Triticum aestivum GN=AGP-L PE=2 SV=2)

HSP 1 Score: 247.669 bits (631), Expect = 6.829e-65
Identity = 125/190 (65.79%), Postives = 142/190 (74.74%), Query Frame = 2
Query:   68 AYAVMTSKHPNEVMTLAPPRLERRRVDPKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFED-AKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGE 634
            A  V+TS        +      R   DP  VAA+ILGGG GT+LFPLT   ATPAVP+ GCYRLIDIPMSNC NSGINKIFV+TQFNSASLNRHI RTY G G NF DG VEVLAATQ PGE+   WF+GTADAVR+F WV ED  KN++IE++ IL GD LYRMDYM+ +Q HVD +ADIT+SCA VGE
Sbjct:   60 AQCVLTSDASPADTLVLRTSFRRNYADPNEVAAVILGGGTGTQLFPLTSTRATPAVPIGGCYRLIDIPMSNCFNSGINKIFVMTQFNSASLNRHIHRTYLGGGINFTDGSVEVLAATQMPGEAA-GWFRGTADAVRKFIWVLEDYYKNKSIEHILILSGDQLYRMDYMELVQKHVDDNADITLSCAPVGE 248          
BLAST of FC917061 vs. ExPASy Swiss-Prot
Match: GLGL3_SOLTU (Glucose-1-phosphate adenylyltransferase large subunit 3, chloroplastic/amyloplastic OS=Solanum tuberosum GN=AGPS3 PE=2 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 1.165e-64
Identity = 127/207 (61.35%), Postives = 152/207 (73.43%), Query Frame = 2
Query:   20 KSLKAEKRDEKVKPGVAYAVMTSKHPNEVMTLAPPRLERRRV-DPKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGE 634
            K  K + R   VKP +  ++ T       +      LER++  D + V AIILGGGAGT+LFPLT R A PAVP+ G YRLID+PMSNCINSGINK+++LTQFNSASLNRHIAR Y FGNG  F  G+VEVLAATQTPGE GK WFQGTA AVRQF W+FEDA++++IE+V IL GDHLYRMDY+ F+QSH    ADITIS   + +
Sbjct:    6 KYTKFQLRSNVVKPNICMSLTTDIAGEAKLK----DLERQKKGDARTVVAIILGGGAGTRLFPLTKRRAKPAVPMGGAYRLIDVPMSNCINSGINKVYILTQFNSASLNRHIARAYNFGNGVTFESGYVEVLAATQTPGELGKRWFQGTAHAVRQFHWLFEDARSKDIEDVLILSGDHLYRMDYLHFVQSHRQSGADITISSLPIDD 208          
BLAST of FC917061 vs. ExPASy Swiss-Prot
Match: GLGL2_MAIZE (Glucose-1-phosphate adenylyltransferase large subunit 2, chloroplastic/amyloplastic OS=Zea mays GN=AGP2 PE=2 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 1.165e-64
Identity = 127/212 (59.91%), Postives = 149/212 (70.28%), Query Frame = 2
Query:    2 CTKQLKKSLKAEKRDEKVKPGVAYAVMTSKHPNEVMTLAPPRLERRRVDPKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFED-AKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGE 634
            C+ +  K+L+      +        V+TS    + +        R   DP  VAA+ILGGG GT+LFPLT   ATPAVP+ GCYRLIDIPMSNC NSGINKIFV+TQFNSASLNRHI RTY G G NF DG VEVLAATQ PGE+   WFQGTADAVR+F WV ED  K++ IE++ IL GD LYRMDYM+ +Q HVD +ADIT+SCA VGE
Sbjct:   35 CSIRRNKALRRMCFSARGAVSSTQCVLTSDAGPDTLVRPNHPFRRNYADPNEVAAVILGGGTGTQLFPLTSTRATPAVPIGGCYRLIDIPMSNCFNSGINKIFVMTQFNSASLNRHIHRTYLGGGINFTDGSVEVLAATQMPGEAA-GWFQGTADAVRKFIWVLEDYYKHKAIEHILILSGDQLYRMDYMELVQKHVDDNADITLSCAPVGE 245          
The following BLAST results are available for this feature:
BLAST of FC917061 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 307
Match NameE-valueIdentityDescription
GLGL3_ARATH3.976e-8976.19Glucose-1-phosphate adenylyltransferase large subu... [more]
GLGL4_ARATH1.157e-8876.19Probable glucose-1-phosphate adenylyltransferase l... [more]
GLGL1_SOLTU2.412e-8676.96Glucose-1-phosphate adenylyltransferase large subu... [more]
GLGL1_BETVU8.599e-7670.31Glucose-1-phosphate adenylyltransferase large subu... [more]
GLGL2_ARATH5.217e-7374.42Glucose-1-phosphate adenylyltransferase large subu... [more]
GLGL1_ARATH7.051e-7072.35Glucose-1-phosphate adenylyltransferase large subu... [more]
GLGL2_SOLTU1.245e-6660.19Glucose-1-phosphate adenylyltransferase large subu... [more]
GLGL2_WHEAT6.829e-6565.79Glucose-1-phosphate adenylyltransferase large subu... [more]
GLGL3_SOLTU1.165e-6461.35Glucose-1-phosphate adenylyltransferase large subu... [more]
GLGL2_MAIZE1.165e-6459.91Glucose-1-phosphate adenylyltransferase large subu... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA38CD01RM2 IVIA1 Citrus clementina cDNA clone IC0AAA38CD01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC917061 ID=FC917061; Name=FC917061; organism=Citrus clementina; type=EST; length=895bp
TTGCACTAAGCAGTTGAAAAAAAGTTTGAAAGCTGAAAAGAGAGATGAGA
AGGTCAAACCCGGTGTTGCTTATGCTGTTATGACATCAAAACATCCCAAT
GAGGTTATGACCTTAGCACCACCTAGGCTTGAGAGAAGAAGAGTAGATCC
GAAAAATGTTGCTGCGATCATTTTAGGTGGCGGTGCAGGGACTAAGCTCT
TTCCTCTTACCTTAAGAGCAGCAACACCAGCTGTTCCAGTTGCGGGCTGT
TACAGGCTTATAGACATCCCTATGAGCAACTGCATCAACAGTGGCATAAA
CAAGATCTTCGTGTTGACCCAATTCAACTCAGCTTCCCTCAATCGGCATA
TAGCACGCACATATTTCGGGAATGGTACCAATTTTGGGGATGGATTTGTG
GAGGTTCTAGCAGCCACTCAAACGCCTGGGGAATCTGGAAAGAATTGGTT
TCAAGGAACAGCTGATGCCGTGAGGCAATTTACATGGGTATTTGAGGATG
CCAAGAATAGGAACATTGAAAATGTAGCTATCTTGTGTGGGGATCATCTT
TATCGAATGGATTATATGGATTTTATCCAGAGTCATGTTGATAGAGATGC
TGATATTACAATTTCATGTGCAGCAGTAGGTGAAAGGTCTGTAGTCACTC
TGTCTTTATGATGTATTTCTCTGAGCTGCCTTTTCTCTACTACATACATG
TCAATCCTGATGCAATATTTTAACTGTTTGGGTTCATGTGATGATTTTTT
TTGGCCAAGAGAATCATAAAAGTAAAACAGAGCATCTGGTTTGTACATTT
TCAATTAAGGCTACTTATTCCATCTAAACTTGAGTTGATAATTTCCAGCC
GCGCATCAGATTATGGATTGGTGAAGATAGACAATATGGGCCGCA
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