FC917077

Overview
NameFC917077
Unique NameFC917077
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length851
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10641 contig Ccv1_Contig10641:413..1263. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC917077 vs. ExPASy Swiss-Prot
Match: MAT2B_PONAB (Methionine adenosyltransferase 2 subunit beta OS=Pongo abelii GN=MAT2B PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.369e-18
Identity = 69/228 (30.26%), Postives = 107/228 (46.93%), Query Frame = 3
Query:  108 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNR 791
            +RVLV G TG LG+ + +   E +   +           P+           F  V+L   +    +   F QP V+V+CAA   P V EN PD+A  +NV +S    L+         LI++S+D V++G    Y+EED  AP+N+YGK+K+  EK + E     A+LR  I+YG   +  + +S      D V    +     H + R P +V+DV  +   L  +
Sbjct:   29 RRVLVTGATGLLGRAVHK---EFQQNNWHAVGCGFRRARPK-----------FEQVNLLDSNAVHHIIHDF-QPHVIVHCAAERRPDVVENQPDAASQLNVDAS--GNLAKEAAAVGAFLIYISSDYVFDGTNPPYREEDIPAPLNLYGKTKLDGEKAVLENNLGAAVLRIPILYG--EVEKLEESAVTVMFDKVQFSNKSANMDHWQQRFPTHVKDVATVCRQLAEK 237          
BLAST of FC917077 vs. ExPASy Swiss-Prot
Match: MAT2B_HUMAN (Methionine adenosyltransferase 2 subunit beta OS=Homo sapiens GN=MAT2B PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.369e-18
Identity = 69/228 (30.26%), Postives = 107/228 (46.93%), Query Frame = 3
Query:  108 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNR 791
            +RVLV G TG LG+ + +   E +   +           P+           F  V+L   +    +   F QP V+V+CAA   P V EN PD+A  +NV +S    L+         LI++S+D V++G    Y+EED  AP+N+YGK+K+  EK + E     A+LR  I+YG   +  + +S      D V    +     H + R P +V+DV  +   L  +
Sbjct:   29 RRVLVTGATGLLGRAVHK---EFQQNNWHAVGCGFRRARPK-----------FEQVNLLDSNAVHHIIHDF-QPHVIVHCAAERRPDVVENQPDAASQLNVDAS--GNLAKEAAAVGAFLIYISSDYVFDGTNPPYREEDIPAPLNLYGKTKLDGEKAVLENNLGAAVLRIPILYG--EVEKLEESAVTVMFDKVQFSNKSANMDHWQQRFPTHVKDVATVCRQLAEK 237          
BLAST of FC917077 vs. ExPASy Swiss-Prot
Match: MAT2B_DANRE (Methionine adenosyltransferase 2 subunit beta OS=Danio rerio GN=mat2b PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.672e-17
Identity = 69/232 (29.74%), Postives = 107/232 (46.12%), Query Frame = 3
Query:  108 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRWLSE 803
            +RVLV G TG LG+ + +   E +   +D     ++   P  L   L       D D   G       ++  QP V+V+CAA   P V E   ++AM++NV +      +   E   + LI++STD V++G    Y E D   P+N+YGKSK+  E+ I   C   A+LR  I++G   +  V +S      + V    E     H + R P Y  DV ++   +  R L +
Sbjct:   18 RRVLVTGATGLLGRAVYK---EFKNNDWDALGCGYNRARPFFLKCNL------LDEDAVRG------VIQSFQPHVIVHCAAERRPDVVERHTEAAMNLNVHACA----TLAKEAGGSFLIYISTDYVFDGRNPPYGENDAPNPLNLYGKSKLEGEREILRHCPGAAVLRVPILFG--EVEKVEESAVTVLFERVQEGAESCTIDHCQQRFPTYTNDVARVCRNMAERALQD 228          
BLAST of FC917077 vs. ExPASy Swiss-Prot
Match: MAT2B_BOVIN (Methionine adenosyltransferase 2 subunit beta OS=Bos taurus GN=MAT2B PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.184e-17
Identity = 66/228 (28.95%), Postives = 106/228 (46.49%), Query Frame = 3
Query:  108 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNR 791
            +RVL+ G TG LG+ + +   E +   +           P+           F  V+L   +    +   F QP V+V+CAA   P V EN PD+A  +NV +S    L+         LI++S+D V++G    Y+EED   P+N+YGK+K+  EK + E     A+LR  ++YG   +  + +S      D V    +     H + R P +V+DV  +   L  +
Sbjct:   29 RRVLITGATGLLGRAVYK---EFQQNNWHAVGCGFRRARPK-----------FEQVNLLDSNAVHHIIYDF-QPHVIVHCAAERRPDVVENHPDAASQLNVDAS--GNLAKEAAAIGAFLIYISSDYVFDGTNPPYREEDIPNPLNLYGKTKLEGEKAVLENNLGAAVLRIPVLYG--EVERLEESAVTIMFDKVQFSNKSANMDHWQQRFPTHVKDVATVCRQLAEK 237          
BLAST of FC917077 vs. ExPASy Swiss-Prot
Match: MAT2B_XENTR (Methionine adenosyltransferase 2 subunit beta OS=Xenopus tropicalis GN=mat2b PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 8.299e-17
Identity = 63/232 (27.16%), Postives = 110/232 (47.41%), Query Frame = 3
Query:  108 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRWLSE 803
            +R L+ G TG LG+ + +   E +   + V    +S   P+           F  ++L   +   A+   F +P V+++CAA   P + E+ P+ A  +NV +S    L+         LI++S+D V++G    Y+E+    P+N+YGK+K+  E+ +       A+LR  ++YG   +  + +S      D V    +     H + R P YV+DV  + L LT R L +
Sbjct:   29 RRALITGATGLLGRAVYK---EFKENSWHVLGCGYSRARPR-----------FEYLNLLDAAAVKALIQDF-KPHVIIHCAAERRPDIVESQPEFASLLNVVAS--ENLAKEAAGVGAFLIYVSSDYVFDGTSPPYREDSVPNPLNLYGKTKLEGERAVLHNNEGAAVLRVPVLYG--DVEKLSESAVTILFDKVQFSNKSANMDHWQQRFPTYVKDVASVCLQLTERRLQD 241          
BLAST of FC917077 vs. ExPASy Swiss-Prot
Match: MAT2B_RAT (Methionine adenosyltransferase 2 subunit beta OS=Rattus norvegicus GN=Mat2b PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.849e-16
Identity = 65/228 (28.51%), Postives = 105/228 (46.05%), Query Frame = 3
Query:  108 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNR 791
            +RVL+ G TG LG+ + +   E +   +           P+           F  V+L        +   F QP V+V+CAA   P V E+ PD+A  +NV +S    L+         LI++S+D V++G    Y EED  +P+N+YGK+K+  EK + E     A+LR  ++YG   +  + +S      D V    +     H + R P +V+DV  +   L  +
Sbjct:   29 RRVLITGATGLLGRAVYK---EFQQSNWHAVGCGFRRARPK-----------FEQVNLLDSEAVHHLIHDF-QPHVIVHCAAERRPDVVESQPDAASQLNVGAS--GNLAKEAAAIGAFLIYISSDYVFDGTNPPYTEEDIPSPLNLYGKTKLDGEKAVLENNLGAAVLRIPVLYG--EVEKLEESAVTVMFDKVQFSNKSANMDHWQQRFPTHVKDVASVCRQLAEK 237          
BLAST of FC917077 vs. ExPASy Swiss-Prot
Match: MAT2B_MOUSE (Methionine adenosyltransferase 2 subunit beta OS=Mus musculus GN=Mat2b PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.849e-16
Identity = 65/228 (28.51%), Postives = 105/228 (46.05%), Query Frame = 3
Query:  108 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNR 791
            +RVL+ G TG LG+ + +   E +   +           P+           F  V+L        +   F QP V+V+CAA   P V E+ PD+A  +NV +S    L+         LI++S+D V++G    Y EED  +P+N+YGK+K+  EK + E     A+LR  ++YG   +  + +S      D V    +     H + R P +V+DV  +   L  +
Sbjct:   29 RRVLITGATGLLGRAVYK---EFQQSNWHTVGCGFRRARPK-----------FEQVNLLDSEAVHHLIHDF-QPHVIVHCAAERRPDVVESQPDAASQLNVGAS--GNLAKEAAAIGAFLIYISSDYVFDGTNPPYTEEDIPSPLNLYGKTKLDGEKAVLENNLGAAVLRIPVLYG--EVEKLEESAVTVMFDKVQFSNKSANMDHWQQRFPTHVKDVASVCRQLAEK 237          
BLAST of FC917077 vs. ExPASy Swiss-Prot
Match: MAT2B_XENLA (Methionine adenosyltransferase 2 subunit beta OS=Xenopus laevis GN=mat2b PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.025e-16
Identity = 61/232 (26.29%), Postives = 111/232 (47.84%), Query Frame = 3
Query:  108 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRWLSE 803
            +R L+ G TG LG+ + +   E +   + V    +S   P+           F  ++L   +   A+   F +P V+++CAA   P + E+ P+ A  +NV +S    L+         LI++S+D V++G    Y+E+    P+N+YGK+K+  E+ + +     A+LR  ++YG   +  + +S      D V    +     H + R P +V+DV  + L LT R + +
Sbjct:   29 RRALITGATGLLGRAVYK---EFKENSWHVLGCGYSRARPR-----------FECLNLLDEAAVKALIQDF-KPHVIIHCAAERRPDIVESQPELASLLNVVAS--ENLAKVAAGVGAFLIYVSSDYVFDGTSPPYREDSIPHPLNLYGKTKLDGERAVLQNNEGAAVLRVPVMYG--DVEKLSESAVTILFDKVQFSNKSANLDHCQQRFPTHVKDVATVCLQLTERKIQD 241          
BLAST of FC917077 vs. ExPASy Swiss-Prot
Match: RFBD_RHISN (Probable dTDP-4-dehydrorhamnose reductase OS=Rhizobium sp. (strain NGR234) GN=NGR_a03570 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.050e-11
Identity = 48/167 (28.74%), Postives = 80/167 (47.90%), Query Frame = 3
Query:  303 AVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKSF-YKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRWLS 800
            A +++   PD++V+ AA +     E++P  A ++N     V  L+         +IHLSTD V++G K   Y EED   P++VYG+SK+  E  +     N  ILR+S +Y     + V K L       +    +++    D+  CP    D+   ++ +  R LS
Sbjct:   43 ASSIRDAAPDIIVSLAAYTAVDKAESEPYEAFAVNRDG--VQALAEAAAGLGVPVIHLSTDYVFDGAKPVPYCEEDRTGPISVYGRSKLEGEFAVASANPNHTILRTSWVYSRYGQNFVKKML------RLADTNDELNVVADQLGCPTSADDISVAVMTIARRMLS 201          
The following BLAST results are available for this feature:
BLAST of FC917077 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
MAT2B_PONAB3.369e-1830.26Methionine adenosyltransferase 2 subunit beta OS=P... [more]
MAT2B_HUMAN3.369e-1830.26Methionine adenosyltransferase 2 subunit beta OS=H... [more]
MAT2B_DANRE1.672e-1729.74Methionine adenosyltransferase 2 subunit beta OS=D... [more]
MAT2B_BOVIN2.184e-1728.95Methionine adenosyltransferase 2 subunit beta OS=B... [more]
MAT2B_XENTR8.299e-1727.16Methionine adenosyltransferase 2 subunit beta OS=X... [more]
MAT2B_RAT1.849e-1628.51Methionine adenosyltransferase 2 subunit beta OS=R... [more]
MAT2B_MOUSE1.849e-1628.51Methionine adenosyltransferase 2 subunit beta OS=M... [more]
MAT2B_XENLA7.025e-1626.29Methionine adenosyltransferase 2 subunit beta OS=X... [more]
RFBD_RHISN1.050e-1128.74Probable dTDP-4-dehydrorhamnose reductase OS=Rhizo... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA64AB12RM1 IVIA1 Citrus clementina cDNA clone IC0AAA64AB12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC917077 ID=FC917077; Name=FC917077; organism=Citrus clementina; type=EST; length=851bp
CCTCTATCAATTTTAAAAATTAATTAGCCTTAAAGATTTCAAATTGCGGA
GAAACGGATCAGAAGCTTTTGTTTTCTTAATTATTGTTGAATCAGAGGAT
GAGTAAAAAGAGAGTGTTGGTGGTCGGAGGCACAGGCTACTTGGGGCAGC
ATTTACTGCAAGGCTTATCCGAGATCGAAGGAAAGCCTTATGACGTGGCG
GCCACTCACCACTCCACGCCGCTGCCTCAGCTCCTGCTGGACGCCCTTCC
TCACTCTTTTGTTTTTTTCGACGTCGATTTGAAATCCGGATCAGGATTCG
ATGCCGTTGCACTCAAATTTGGCCAGCCCGACGTGGTCGTGAACTGCGCC
GCTCTCTCCGTGCCACGTGTTTGTGAAAATGACCCCGATTCTGCTATGTC
CATTAATGTACCTTCTTCTCTTGTAAATTGGTTATCAAGTTTCACTGAGA
ATAAAGAAAATCTCTTGATTCATTTATCGACCGATCAAGTTTATGAAGGA
GTCAAGTCTTTCTATAAAGAAGAGGATGAAATTGCTCCGGTGAATGTTTA
CGGCAAATCGAAAGTGGCAGCGGAGAAGTTTATTTATGAGAAATGCTCAA
ATTTTGCAATTTTGAGAAGCAGTATCATATATGGGCCGCAAACTATCTCG
CCCGTACCAAAATCTCTTCCGATTCAGTGGATTGATAGTGTTCTTTCAAA
AGGAGAGAAAGTGGAATTTTTTCATGATGAGTGCCGCTGCCCAGTATATG
TCAGGGATGTTGTGAAGATTATACTGGCTTTGACAAATAGATGGTTATCA
GAGGACAAGCAAATGCAGTTACTTCTGAATGTGGGTGGACCAGACAGGGT
A
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