FC917080

Overview
NameFC917080
Unique NameFC917080
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length886
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC917080 vs. ExPASy Swiss-Prot
Match: HAS1_CRYNE (ATP-dependent RNA helicase HAS1 OS=Cryptococcus neoformans GN=HAS1 PE=3 SV=1)

HSP 1 Score: 262.307 bits (669), Expect = 2.635e-69
Identity = 130/166 (78.31%), Postives = 153/166 (92.17%), Query Frame = 1
Query:  388 SLNLSSQTQSAIDALGFTSMTEVQARTIPPLLSGRDVLGAARTGSGKTLAFLIPSIEILSTLKFKPANGTGIIILTPTRELALQIFSIVRDLMGGFHSQTSGVVMGGANRKSEADRLAKGVNLIVATPGRLLDHLRNTKSFVFQNLKALVIDEADRILEVGFEEEM 885
            +LNLS  T +AI+ +GF +MTEVQARTIPPLL+G+DVLGAARTGSGKT+AFLIPS+E+LSTL+FKP NGTG+II++PTRELALQIF + ++LM G HSQT GV+MGGANRK+EAD+L KGVNLIVATPGRLLDHL+NTK FVF+NLKALVIDEADRILE+GFEEEM
Sbjct:  133 TLNLSPPTTAAIERMGFETMTEVQARTIPPLLAGKDVLGAARTGSGKTMAFLIPSVELLSTLRFKPVNGTGVIIISPTRELALQIFGVAKELMQG-HSQTFGVLMGGANRKAEADKLVKGVNLIVATPGRLLDHLQNTKGFVFKNLKALVIDEADRILEIGFEEEM 297          
BLAST of FC917080 vs. ExPASy Swiss-Prot
Match: HAS1_ASHGO (ATP-dependent RNA helicase HAS1 OS=Ashbya gossypii GN=HAS1 PE=3 SV=1)

HSP 1 Score: 258.07 bits (658), Expect = 4.970e-68
Identity = 126/165 (76.36%), Postives = 151/165 (91.52%), Query Frame = 1
Query:  391 LNLSSQTQSAIDALGFTSMTEVQARTIPPLLSGRDVLGAARTGSGKTLAFLIPSIEILSTLKFKPANGTGIIILTPTRELALQIFSIVRDLMGGFHSQTSGVVMGGANRKSEADRLAKGVNLIVATPGRLLDHLRNTKSFVFQNLKALVIDEADRILEVGFEEEM 885
            LNLSSQT  AI  +GFT MT+VQARTIPPL++GRDVLGAA+TGSGKTLAFL+P+IE+L +LKFKP NGTG+I++TPTRELALQIF + R+LM  FHSQT G+V+GGANR+ EA++LAKGVNL++ATPGRLLDHL+NTK FVF+NLKALVIDEADRILE+GFE+EM
Sbjct:   44 LNLSSQTLKAIGKMGFTKMTQVQARTIPPLMAGRDVLGAAKTGSGKTLAFLLPAIEMLHSLKFKPRNGTGVIVITPTRELALQIFGVARELM-EFHSQTFGIVIGGANRRQEAEKLAKGVNLLIATPGRLLDHLQNTKGFVFKNLKALVIDEADRILEIGFEDEM 207          
BLAST of FC917080 vs. ExPASy Swiss-Prot
Match: HAS1_CANGA (ATP-dependent RNA helicase HAS1 OS=Candida glabrata GN=HAS1 PE=3 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 4.207e-67
Identity = 125/166 (75.30%), Postives = 150/166 (90.36%), Query Frame = 1
Query:  388 SLNLSSQTQSAIDALGFTSMTEVQARTIPPLLSGRDVLGAARTGSGKTLAFLIPSIEILSTLKFKPANGTGIIILTPTRELALQIFSIVRDLMGGFHSQTSGVVMGGANRKSEADRLAKGVNLIVATPGRLLDHLRNTKSFVFQNLKALVIDEADRILEVGFEEEM 885
            SLNLS  T  AI+ +GF+ MT VQARTIPPL++GRDVLGAA+TGSGKTLAFL+P+IE+L +LKFKP NGTG+II+TPTRELALQIF +VR+LM  FHSQT G+V+GGANR+ EA++L KGVNL+VATPGRLLDHL+NTK F+F+NLKALVIDEADRILE+GFE+EM
Sbjct:   33 SLNLSQPTMRAIEKMGFSKMTPVQARTIPPLMAGRDVLGAAKTGSGKTLAFLLPTIELLHSLKFKPRNGTGVIIITPTRELALQIFGVVRELM-EFHSQTFGIVIGGANRRQEAEKLMKGVNLLVATPGRLLDHLQNTKGFIFKNLKALVIDEADRILEIGFEDEM 197          
BLAST of FC917080 vs. ExPASy Swiss-Prot
Match: HAS1_YEAST (ATP-dependent RNA helicase HAS1 OS=Saccharomyces cerevisiae GN=HAS1 PE=1 SV=1)

HSP 1 Score: 251.906 bits (642), Expect = 3.561e-66
Identity = 123/165 (74.55%), Postives = 148/165 (89.70%), Query Frame = 1
Query:  391 LNLSSQTQSAIDALGFTSMTEVQARTIPPLLSGRDVLGAARTGSGKTLAFLIPSIEILSTLKFKPANGTGIIILTPTRELALQIFSIVRDLMGGFHSQTSGVVMGGANRKSEADRLAKGVNLIVATPGRLLDHLRNTKSFVFQNLKALVIDEADRILEVGFEEEM 885
            L LS  T  AI+ +GFT+MT VQARTIPPLL+GRDVLGAA+TGSGKTLAFLIP+IE+L +LKFKP NGTGII++TPTRELALQIF + R+LM  FHSQT G+V+GGANR+ EA++L KGVN+++ATPGRLLDHL+NTK FVF+NLKAL+IDEADRILE+GFE+EM
Sbjct:   47 LKLSQPTLKAIEKMGFTTMTSVQARTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIELLHSLKFKPRNGTGIIVITPTRELALQIFGVARELM-EFHSQTFGIVIGGANRRQEAEKLMKGVNMLIATPGRLLDHLQNTKGFVFKNLKALIIDEADRILEIGFEDEM 210          
BLAST of FC917080 vs. ExPASy Swiss-Prot
Match: HAS1_KLULA (ATP-dependent RNA helicase HAS1 OS=Kluyveromyces lactis GN=HAS1 PE=3 SV=1)

HSP 1 Score: 248.44 bits (633), Expect = 3.938e-65
Identity = 121/165 (73.33%), Postives = 145/165 (87.88%), Query Frame = 1
Query:  391 LNLSSQTQSAIDALGFTSMTEVQARTIPPLLSGRDVLGAARTGSGKTLAFLIPSIEILSTLKFKPANGTGIIILTPTRELALQIFSIVRDLMGGFHSQTSGVVMGGANRKSEADRLAKGVNLIVATPGRLLDHLRNTKSFVFQNLKALVIDEADRILEVGFEEEM 885
            L LS  T  AI  +GFT MT VQ RTIPPLL+G+DVLGAA+TGSGKTLAFLIP+IE+L +LKFKP NGTG+I++TPTRELALQIF + R+LM  FHSQT G+V+GGANR+ EAD+L KGVN+++ATPGRLLDHL+NTK F+F+NLKALVIDEADRILE+GFE+EM
Sbjct:   39 LKLSDGTMKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIEMLHSLKFKPRNGTGVIVITPTRELALQIFGVARELM-EFHSQTFGIVIGGANRRQEADKLMKGVNILIATPGRLLDHLQNTKGFIFKNLKALVIDEADRILEIGFEDEM 202          
BLAST of FC917080 vs. ExPASy Swiss-Prot
Match: HAS1_PHANO (ATP-dependent RNA helicase HAS1 OS=Phaeosphaeria nodorum GN=HAS1 PE=3 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 4.354e-64
Identity = 118/165 (71.52%), Postives = 148/165 (89.70%), Query Frame = 1
Query:  391 LNLSSQTQSAIDALGFTSMTEVQARTIPPLLSGRDVLGAARTGSGKTLAFLIPSIEILSTLKFKPANGTGIIILTPTRELALQIFSIVRDLMGGFHSQTSGVVMGGANRKSEADRLAKGVNLIVATPGRLLDHLRNTKSFVFQNLKALVIDEADRILEVGFEEEM 885
            LNLS +T  AI  +GF SMTE+Q + IPPLLSG+DVLGAA+TGSGKTLAFLIP+IE+LS+++FKP NGTG+I+++PTRELALQIF + R+LM   HSQT G+V+GGANR++EA++LAKGVNL++ATPGRLLDHL NT+ FVF+NLK+L+IDEADRILEVGFE+EM
Sbjct:  136 LNLSERTMEAIKTMGFESMTEIQRKAIPPLLSGKDVLGAAKTGSGKTLAFLIPAIEMLSSMRFKPRNGTGVIVVSPTRELALQIFGVARELMEK-HSQTFGIVIGGANRRAEAEKLAKGVNLLIATPGRLLDHLHNTQGFVFKNLKSLIIDEADRILEVGFEDEM 299          
BLAST of FC917080 vs. ExPASy Swiss-Prot
Match: HAS1_USTMA (ATP-dependent RNA helicase HAS1 OS=Ustilago maydis GN=HAS1 PE=3 SV=1)

HSP 1 Score: 244.588 bits (623), Expect = 5.686e-64
Identity = 121/165 (73.33%), Postives = 145/165 (87.88%), Query Frame = 1
Query:  391 LNLSSQTQSAIDALGFTSMTEVQARTIPPLLSGRDVLGAARTGSGKTLAFLIPSIEILSTLKFKPANGTGIIILTPTRELALQIFSIVRDLMGGFHSQTSGVVMGGANRKSEADRLAKGVNLIVATPGRLLDHLRNTKSFVFQNLKALVIDEADRILEVGFEEEM 885
            L+LS  T+ AIDA+GF +MTEVQAR IPPL++G+DVLGAA+TGSGKTL+FLIP+IE+L  LKFKP NGTG II++PTRELALQIF + ++LM   H QT G++MGGANR++EAD+L KGVNLIVATPGRLLDHL+NTK FVF NLKAL IDEADRILE+GFE+EM
Sbjct:   55 LDLSEPTRKAIDAMGFKTMTEVQARCIPPLMAGKDVLGAAQTGSGKTLSFLIPAIEMLHRLKFKPRNGTGAIIISPTRELALQIFGVAKELM-AHHHQTFGIIMGGANRRAEADKLQKGVNLIVATPGRLLDHLQNTKGFVFSNLKALCIDEADRILEIGFEDEM 218          
BLAST of FC917080 vs. ExPASy Swiss-Prot
Match: HAS1_PICGU (ATP-dependent RNA helicase HAS1 OS=Pichia guilliermondii GN=HAS1 PE=3 SV=2)

HSP 1 Score: 244.202 bits (622), Expect = 7.426e-64
Identity = 120/165 (72.73%), Postives = 144/165 (87.27%), Query Frame = 1
Query:  391 LNLSSQTQSAIDALGFTSMTEVQARTIPPLLSGRDVLGAARTGSGKTLAFLIPSIEILSTLKFKPANGTGIIILTPTRELALQIFSIVRDLMGGFHSQTSGVVMGGANRKSEADRLAKGVNLIVATPGRLLDHLRNTKSFVFQNLKALVIDEADRILEVGFEEEM 885
            L LS  T  AI  +GF  MT+VQ +TIPPLL+GRDVLGAA+TGSGKTLAFLIP+IE+L +LKFKP NGTG+I+++PTRELALQIF + RDLM   HSQT G+V+GGANR+ EAD+L KGVNL++ATPGRLLDHL+NTK F+F+NLKALVIDEADRILE+GFE+EM
Sbjct:  110 LGLSEPTMRAIKDMGFEKMTKVQEKTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIEMLYSLKFKPRNGTGVIVVSPTRELALQIFGVARDLM-AHHSQTLGIVIGGANRRQEADKLMKGVNLLIATPGRLLDHLQNTKGFIFKNLKALVIDEADRILEIGFEDEM 273          
BLAST of FC917080 vs. ExPASy Swiss-Prot
Match: HAS1_PICST (ATP-dependent RNA helicase HAS1 OS=Pichia stipitis GN=HAS1 PE=3 SV=2)

HSP 1 Score: 242.276 bits (617), Expect = 2.822e-63
Identity = 118/163 (72.39%), Postives = 146/163 (89.57%), Query Frame = 1
Query:  397 LSSQTQSAIDALGFTSMTEVQARTIPPLLSGRDVLGAARTGSGKTLAFLIPSIEILSTLKFKPANGTGIIILTPTRELALQIFSIVRDLMGGFHSQTSGVVMGGANRKSEADRLAKGVNLIVATPGRLLDHLRNTKSFVFQNLKALVIDEADRILEVGFEEEM 885
            LS  T  AI  +GF +MT+VQA+TIPPLL+G+DVLGAA+TGSGKTLAFLIP+IE+L +LKFKP NGTG+I+++PTRELALQIF + R+LM   H+QT G+V+GGANR+ EA++LAKGVNL++ATPGRLLDHL+NT+ FVF+NLKALVIDEADRILE+GFEEEM
Sbjct:  110 LSEPTMRAISDMGFKTMTKVQAKTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIELLYSLKFKPRNGTGVIVVSPTRELALQIFGVARELM-AHHTQTFGIVIGGANRRQEAEKLAKGVNLLIATPGRLLDHLQNTQGFVFKNLKALVIDEADRILEIGFEEEM 271          
BLAST of FC917080 vs. ExPASy Swiss-Prot
Match: HAS1_COCIM (ATP-dependent RNA helicase HAS1 OS=Coccidioides immitis GN=HAS1 PE=3 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 2.822e-63
Identity = 117/165 (70.91%), Postives = 146/165 (88.48%), Query Frame = 1
Query:  391 LNLSSQTQSAIDALGFTSMTEVQARTIPPLLSGRDVLGAARTGSGKTLAFLIPSIEILSTLKFKPANGTGIIILTPTRELALQIFSIVRDLMGGFHSQTSGVVMGGANRKSEADRLAKGVNLIVATPGRLLDHLRNTKSFVFQNLKALVIDEADRILEVGFEEEM 885
            LNLS +T  AI  +GF +MTE+Q R IPPL++GRDVLGAA+TGSGKTL+FLIP++E+LS L+FKP NGTG+I+++PTRELALQIF + R+LM   HSQT G+V+GGANR++EA++L KGVNL++ATPGRLLDHL+NT  FVF+NLKALVIDEADRILEVGFE+EM
Sbjct:  129 LNLSEKTLKAIQEMGFETMTEIQRRGIPPLMAGRDVLGAAKTGSGKTLSFLIPAVEMLSALRFKPRNGTGVIVVSPTRELALQIFGVARELM-AHHSQTYGIVIGGANRRAEAEKLTKGVNLLIATPGRLLDHLQNTDGFVFKNLKALVIDEADRILEVGFEDEM 292          
The following BLAST results are available for this feature:
BLAST of FC917080 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
HAS1_CRYNE2.635e-6978.31ATP-dependent RNA helicase HAS1 OS=Cryptococcus ne... [more]
HAS1_ASHGO4.970e-6876.36ATP-dependent RNA helicase HAS1 OS=Ashbya gossypii... [more]
HAS1_CANGA4.207e-6775.30ATP-dependent RNA helicase HAS1 OS=Candida glabrat... [more]
HAS1_YEAST3.561e-6674.55ATP-dependent RNA helicase HAS1 OS=Saccharomyces c... [more]
HAS1_KLULA3.938e-6573.33ATP-dependent RNA helicase HAS1 OS=Kluyveromyces l... [more]
HAS1_PHANO4.354e-6471.52ATP-dependent RNA helicase HAS1 OS=Phaeosphaeria n... [more]
HAS1_USTMA5.686e-6473.33ATP-dependent RNA helicase HAS1 OS=Ustilago maydis... [more]
HAS1_PICGU7.426e-6472.73ATP-dependent RNA helicase HAS1 OS=Pichia guillier... [more]
HAS1_PICST2.822e-6372.39ATP-dependent RNA helicase HAS1 OS=Pichia stipitis... [more]
HAS1_COCIM2.822e-6370.91ATP-dependent RNA helicase HAS1 OS=Coccidioides im... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA71BH03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA71BH03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC917080 ID=FC917080; Name=FC917080; organism=Citrus clementina; type=EST; length=886bp
CATACCTTGACATCCCTCGTCATGACACCCGTAGCATCAACATCGGCTGT
TCAGCAAAAGAAACGCAAGAGGTCAAAGCACGGCGGGAGCACTGCCGTCG
CCTCGACCTCGACCTCGACCATAGAGGCGAGTCCGGTGAAAAAGGTCAAG
AGCAAGGGAGAGGGCAAGCAACGTCAAGCTGTTGCTGCCGAGGAGAAGGA
AGATGACGATGAGGATGCTGTCGAGGAGCAGGAAGAGTCTGCTGCCGGGC
CGTCTGGGGGACAAGCTATGGACACGACCCCAGCCTCTGCTCCTGTCTCT
GCCGAAGCTGGTCCTTCGACAACCTCGGCCGCATCGGACACACCTACTAC
CACCGCCGGAACGGCCCTGACCTCTCAAACTTTCACCTCCCTCAACCTCT
CTTCCCAAACTCAATCCGCCATCGACGCCCTCGGATTCACCTCGATGACA
GAAGTTCAAGCCCGGACCATCCCTCCTCTCCTCTCCGGACGTGACGTCCT
CGGTGCAGCCCGAACCGGATCCGGCAAGACCCTGGCTTTCCTGATCCCTT
CCATCGAAATCCTCAGTACTCTCAAGTTCAAACCGGCCAACGGGACGGGT
ATCATCATCCTCACGCCAACCAGGGAACTGGCCCTTCAGATCTTCTCCAT
CGTGAGGGATCTGATGGGTGGATTCCACAGTCAGACGTCTGGAGTAGTCA
TGGGCGGTGCGAATAGGAAATCCGAGGCGGATAGGTTGGCCAAGGGGGTC
AACCTGATCGTGGCTACTCCGGGGAGGTTGTTGGATCACTTGAGGAACAC
CAAATCCTTCGTTTTTCAGAATCTCAAAGCGCTCGTCATCGACGAGGCGG
ACCGGATCTTGGAAGTCGGGTTCGAGGAGGAAATGA
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