FC917084
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC917084 vs. ExPASy Swiss-Prot
Match: TRP13_HUMAN (Thyroid receptor-interacting protein 13 OS=Homo sapiens GN=TRIP13 PE=1 SV=2) HSP 1 Score: 235.728 bits (600), Expect = 2.880e-61 Identity = 123/250 (49.20%), Postives = 171/250 (68.40%), Query Frame = 2 Query: 197 LPLLAEEKFLVSVEVCLTLSSTARIDDVRLAVERMLEKRSLSYVXXXXXXXXXXXFLVENVQRICVCDTDEWVKNHDILLFWQVKPVVQVFQLSEEGPCEELSGDG--QLSSFNEWILPAKEFDGMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAA 940 LP +AE V VEV SSTA+ +D+ L+V ++L + ++ + FL NVQ + + DT+ VK+ + + +FQL+E+GP E + + + N W+LPA EF G+W+SL+Y+ +K LL Y + L+F++K VN L++WNR+VLLHGPPGTGKTSLCKALAQKL+IR SSRY QL+E+N+HSLFSKWFSESGKLV K+FQKIQ+++++++ LVFVLIDEVESL A Sbjct: 12 LPCVAESP-TVHVEVHQRGSSTAKKEDINLSVRKLLNRHNIVF-GDYTWTEFDEPFLTRNVQSVSIIDTELKVKDSQPIDLSACTVALHIFQLNEDGPSSENLEEETENIIAANHWVLPAAEFHGLWDSLVYDVEVKSHLLDYVMTTLLFSDKNVNSNLITWNRVVLLHGPPGTGKTSLCKALAQKLTIRLSSRYRYGQLIEINSHSLFSKWFSESGKLVTKMFQKIQDLIDDKDALVFVLIDEVESLTA 259
BLAST of FC917084 vs. ExPASy Swiss-Prot
Match: TRP13_RAT (Thyroid receptor-interacting protein 13 OS=Rattus norvegicus GN=Trip13 PE=2 SV=1) HSP 1 Score: 229.95 bits (585), Expect = 1.580e-59 Identity = 120/250 (48.00%), Postives = 169/250 (67.60%), Query Frame = 2 Query: 197 LPLLAEEKFLVSVEVCLTLSSTARIDDVRLAVERMLEKRSLSYVXXXXXXXXXXXFLVENVQRICVCDTDEWVKNHDILLFWQVKPVVQVFQLSEEGPCEELSGDG--QLSSFNEWILPAKEFDGMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAA 940 LP +AE V VEV STA+ +D++ +V R+L++ ++ + FL NVQ + + DT+ K+ + + +FQL+EEGP E + + + + W+LPA EF G+W+SL+Y+ +K LL Y + L+F++K V+ L++WNR+VLLHGPPGTGKTSLCKALAQKL+IR SSRY QL+E+N+HSLFSKWFSESGKLV K+FQKIQ++++++ LVFVLIDEVESL A Sbjct: 12 LPCVAESP-AVHVEVLQRSGSTAKKEDIKQSVYRLLKRHNIVF-GDYVWTEFDEPFLTRNVQSVSIVDTELKAKDPQPIDLSACTIALHIFQLNEEGPSSENLDEETENIIAASHWVLPAAEFHGLWDSLVYDVEVKSHLLDYVMTTLLFSDKNVDSNLITWNRVVLLHGPPGTGKTSLCKALAQKLTIRLSSRYRYGQLIEINSHSLFSKWFSESGKLVTKMFQKIQDLIDDKEALVFVLIDEVESLTA 259
BLAST of FC917084 vs. ExPASy Swiss-Prot
Match: TRP13_MOUSE (Thyroid receptor-interacting protein 13 OS=Mus musculus GN=Trip13 PE=2 SV=1) HSP 1 Score: 227.639 bits (579), Expect = 7.843e-59 Identity = 119/250 (47.60%), Postives = 168/250 (67.20%), Query Frame = 2 Query: 197 LPLLAEEKFLVSVEVCLTLSSTARIDDVRLAVERMLEKRSLSYVXXXXXXXXXXXFLVENVQRICVCDTDEWVKNHDILLFWQVKPVVQVFQLSEEGPCEELSGDG--QLSSFNEWILPAKEFDGMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAA 940 LP +AE V VEV STA+ +D++ +V R+L + ++ + FL NVQ + + DT+ K+ + + +FQL+EEGP E + + + + W+LPA EF G+W+SL+Y+ +K LL Y + ++F++K V+ L++WNR+VLLHGPPGTGKTSLCKALAQKL+IR SSRY QL+E+N+HSLFSKWFSESGKLV K+FQKIQ++++++ LVFVLIDEVESL A Sbjct: 12 LPCVAESP-AVHVEVLQRSGSTAKKEDIKSSVYRLLNRHNIVF-GDYVWTEFDDPFLSRNVQSVSIVDTELKAKDPQPIDLSACTIALHIFQLNEEGPSSENLDEETENIIAASHWVLPAAEFHGLWDSLVYDVEVKSHLLDYVMTTVLFSDKNVDSNLITWNRVVLLHGPPGTGKTSLCKALAQKLTIRLSSRYRYGQLIEINSHSLFSKWFSESGKLVTKMFQKIQDLIDDKEALVFVLIDEVESLTA 259
BLAST of FC917084 vs. ExPASy Swiss-Prot
Match: PCH2_CAEEL (Putative pachytene checkpoint protein 2 OS=Caenorhabditis elegans GN=pch-2 PE=2 SV=1) HSP 1 Score: 173.711 bits (439), Expect = 1.344e-42 Identity = 84/163 (51.53%), Postives = 115/163 (70.55%), Query Frame = 2 Query: 458 VQVFQLSEEGPCEEL----SGDGQLSSFNEWILPAKEFDGMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESL 934 + V++L ++GP + GD + W LP EFD +WE+LIY+S LK ++ Y A+ +EK VN +++ NR++LL GPPGTGKTSLCK LAQ LSIR + +Y + ++E+N+HSLFSKWFSESGKLV K+F +I E+ E+E +VFVLIDEVESL Sbjct: 95 IHVYKLHKDGPLSQNIGDDDGDESIIGSQLWQLPCVEFDSIWENLIYDSNLKNEVMSYVAALARLSEKHVNTKIINVNRLILLTGPPGTGKTSLCKGLAQHLSIRMNDKYSKSVMLEINSHSLFSKWFSESGKLVQKMFDQIDELAEDEKCMVFVLIDEVESL 257
BLAST of FC917084 vs. ExPASy Swiss-Prot
Match: PCH2_YEAST (Pachytene checkpoint protein 2 OS=Saccharomyces cerevisiae GN=PCH2 PE=1 SV=2) HSP 1 Score: 103.605 bits (257), Expect = 1.708e-21 Identity = 63/160 (39.38%), Postives = 98/160 (61.25%), Query Frame = 2 Query: 518 LSSFNEWILPAKEFDGMWESLIYESGLKQRLLHYAASALM---FAEKGVN-----PFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIR--FSSRYPQCQ------LVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVE-EENNLVFV--LIDEVESLAA 940 L+ N LP F+G WESL + + +K+RL YA +L F + G + L++ N+++L+HGPPGTGKT+LCKAL QKLS+R FS ++E++ +FSKWF ES K ++ +F+ I+E+++ E +F+ LIDEVE++A+ Sbjct: 246 LNLVNISYLPGTTFEGQWESLYFGNNIKERLYSYATISLKIARFKQTGDSNQEDITTLITNNKLLLVHGPPGTGKTTLCKALCQKLSVRREFSDGSDTIDTNYKGIIIELSCARIFSKWFGESSKNISIVFKDIEELLKVNEGRGIFICLLIDEVEAIAS 405 The following BLAST results are available for this feature:
BLAST of FC917084 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 5
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC917084 ID=FC917084; Name=FC917084; organism=Citrus clementina; type=EST; length=942bpback to top |