FC917084

Overview
NameFC917084
Unique NameFC917084
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length942
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13987 contig Ccv1_Contig13987:1..942. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC917084 vs. ExPASy Swiss-Prot
Match: TRP13_HUMAN (Thyroid receptor-interacting protein 13 OS=Homo sapiens GN=TRIP13 PE=1 SV=2)

HSP 1 Score: 235.728 bits (600), Expect = 2.880e-61
Identity = 123/250 (49.20%), Postives = 171/250 (68.40%), Query Frame = 2
Query:  197 LPLLAEEKFLVSVEVCLTLSSTARIDDVRLAVERMLEKRSLSYVXXXXXXXXXXXFLVENVQRICVCDTDEWVKNHDILLFWQVKPVVQVFQLSEEGPCEELSGDG--QLSSFNEWILPAKEFDGMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAA 940
            LP +AE    V VEV    SSTA+ +D+ L+V ++L + ++ +            FL  NVQ + + DT+  VK+   +        + +FQL+E+GP  E   +    + + N W+LPA EF G+W+SL+Y+  +K  LL Y  + L+F++K VN  L++WNR+VLLHGPPGTGKTSLCKALAQKL+IR SSRY   QL+E+N+HSLFSKWFSESGKLV K+FQKIQ+++++++ LVFVLIDEVESL A
Sbjct:   12 LPCVAESP-TVHVEVHQRGSSTAKKEDINLSVRKLLNRHNIVF-GDYTWTEFDEPFLTRNVQSVSIIDTELKVKDSQPIDLSACTVALHIFQLNEDGPSSENLEEETENIIAANHWVLPAAEFHGLWDSLVYDVEVKSHLLDYVMTTLLFSDKNVNSNLITWNRVVLLHGPPGTGKTSLCKALAQKLTIRLSSRYRYGQLIEINSHSLFSKWFSESGKLVTKMFQKIQDLIDDKDALVFVLIDEVESLTA 259          
BLAST of FC917084 vs. ExPASy Swiss-Prot
Match: TRP13_RAT (Thyroid receptor-interacting protein 13 OS=Rattus norvegicus GN=Trip13 PE=2 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 1.580e-59
Identity = 120/250 (48.00%), Postives = 169/250 (67.60%), Query Frame = 2
Query:  197 LPLLAEEKFLVSVEVCLTLSSTARIDDVRLAVERMLEKRSLSYVXXXXXXXXXXXFLVENVQRICVCDTDEWVKNHDILLFWQVKPVVQVFQLSEEGPCEELSGDG--QLSSFNEWILPAKEFDGMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAA 940
            LP +AE    V VEV     STA+ +D++ +V R+L++ ++ +            FL  NVQ + + DT+   K+   +        + +FQL+EEGP  E   +    + + + W+LPA EF G+W+SL+Y+  +K  LL Y  + L+F++K V+  L++WNR+VLLHGPPGTGKTSLCKALAQKL+IR SSRY   QL+E+N+HSLFSKWFSESGKLV K+FQKIQ++++++  LVFVLIDEVESL A
Sbjct:   12 LPCVAESP-AVHVEVLQRSGSTAKKEDIKQSVYRLLKRHNIVF-GDYVWTEFDEPFLTRNVQSVSIVDTELKAKDPQPIDLSACTIALHIFQLNEEGPSSENLDEETENIIAASHWVLPAAEFHGLWDSLVYDVEVKSHLLDYVMTTLLFSDKNVDSNLITWNRVVLLHGPPGTGKTSLCKALAQKLTIRLSSRYRYGQLIEINSHSLFSKWFSESGKLVTKMFQKIQDLIDDKEALVFVLIDEVESLTA 259          
BLAST of FC917084 vs. ExPASy Swiss-Prot
Match: TRP13_MOUSE (Thyroid receptor-interacting protein 13 OS=Mus musculus GN=Trip13 PE=2 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 7.843e-59
Identity = 119/250 (47.60%), Postives = 168/250 (67.20%), Query Frame = 2
Query:  197 LPLLAEEKFLVSVEVCLTLSSTARIDDVRLAVERMLEKRSLSYVXXXXXXXXXXXFLVENVQRICVCDTDEWVKNHDILLFWQVKPVVQVFQLSEEGPCEELSGDG--QLSSFNEWILPAKEFDGMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAA 940
            LP +AE    V VEV     STA+ +D++ +V R+L + ++ +            FL  NVQ + + DT+   K+   +        + +FQL+EEGP  E   +    + + + W+LPA EF G+W+SL+Y+  +K  LL Y  + ++F++K V+  L++WNR+VLLHGPPGTGKTSLCKALAQKL+IR SSRY   QL+E+N+HSLFSKWFSESGKLV K+FQKIQ++++++  LVFVLIDEVESL A
Sbjct:   12 LPCVAESP-AVHVEVLQRSGSTAKKEDIKSSVYRLLNRHNIVF-GDYVWTEFDDPFLSRNVQSVSIVDTELKAKDPQPIDLSACTIALHIFQLNEEGPSSENLDEETENIIAASHWVLPAAEFHGLWDSLVYDVEVKSHLLDYVMTTVLFSDKNVDSNLITWNRVVLLHGPPGTGKTSLCKALAQKLTIRLSSRYRYGQLIEINSHSLFSKWFSESGKLVTKMFQKIQDLIDDKEALVFVLIDEVESLTA 259          
BLAST of FC917084 vs. ExPASy Swiss-Prot
Match: PCH2_CAEEL (Putative pachytene checkpoint protein 2 OS=Caenorhabditis elegans GN=pch-2 PE=2 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 1.344e-42
Identity = 84/163 (51.53%), Postives = 115/163 (70.55%), Query Frame = 2
Query:  458 VQVFQLSEEGPCEEL----SGDGQLSSFNEWILPAKEFDGMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESL 934
            + V++L ++GP  +      GD  +     W LP  EFD +WE+LIY+S LK  ++ Y A+    +EK VN  +++ NR++LL GPPGTGKTSLCK LAQ LSIR + +Y +  ++E+N+HSLFSKWFSESGKLV K+F +I E+ E+E  +VFVLIDEVESL
Sbjct:   95 IHVYKLHKDGPLSQNIGDDDGDESIIGSQLWQLPCVEFDSIWENLIYDSNLKNEVMSYVAALARLSEKHVNTKIINVNRLILLTGPPGTGKTSLCKGLAQHLSIRMNDKYSKSVMLEINSHSLFSKWFSESGKLVQKMFDQIDELAEDEKCMVFVLIDEVESL 257          
BLAST of FC917084 vs. ExPASy Swiss-Prot
Match: PCH2_YEAST (Pachytene checkpoint protein 2 OS=Saccharomyces cerevisiae GN=PCH2 PE=1 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 1.708e-21
Identity = 63/160 (39.38%), Postives = 98/160 (61.25%), Query Frame = 2
Query:  518 LSSFNEWILPAKEFDGMWESLIYESGLKQRLLHYAASALM---FAEKGVN-----PFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIR--FSSRYPQCQ------LVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVE-EENNLVFV--LIDEVESLAA 940
            L+  N   LP   F+G WESL + + +K+RL  YA  +L    F + G +       L++ N+++L+HGPPGTGKT+LCKAL QKLS+R  FS             ++E++   +FSKWF ES K ++ +F+ I+E+++  E   +F+  LIDEVE++A+
Sbjct:  246 LNLVNISYLPGTTFEGQWESLYFGNNIKERLYSYATISLKIARFKQTGDSNQEDITTLITNNKLLLVHGPPGTGKTTLCKALCQKLSVRREFSDGSDTIDTNYKGIIIELSCARIFSKWFGESSKNISIVFKDIEELLKVNEGRGIFICLLIDEVEAIAS 405          
The following BLAST results are available for this feature:
BLAST of FC917084 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
TRP13_HUMAN2.880e-6149.20Thyroid receptor-interacting protein 13 OS=Homo sa... [more]
TRP13_RAT1.580e-5948.00Thyroid receptor-interacting protein 13 OS=Rattus ... [more]
TRP13_MOUSE7.843e-5947.60Thyroid receptor-interacting protein 13 OS=Mus mus... [more]
PCH2_CAEEL1.344e-4251.53Putative pachytene checkpoint protein 2 OS=Caenorh... [more]
PCH2_YEAST1.708e-2139.38Pachytene checkpoint protein 2 OS=Saccharomyces ce... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA71BH04RM1 IVIA1 Citrus clementina cDNA clone IC0AAA71BH04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC917084 ID=FC917084; Name=FC917084; organism=Citrus clementina; type=EST; length=942bp
CAAATTTTATGTCCCTAGGCCTAGGGTTTGACACAGTATCCAATCCTCTG
TGAAGCCGTTCACATTGTAATCCCTAATCCCGGTTACGCTCACCAAAATG
AGTACTCCCATGGAAATCACCGTACATAACTCCACAGAAGCCGAGATCTC
TGACCAAGACGGCATCCCCGAGCAAAAAGGCGTCGCCGGCCCTCCCCTGC
CTCTTCTCGCCGAAGAAAAATTTCTCGTATCCGTTGAAGTTTGTTTAACG
CTCTCAAGCACAGCTCGAATAGACGATGTTAGGTTAGCTGTTGAAAGAAT
GCTTGAAAAGAGAAGTTTAAGCTATGTAGATGGGCCGATCCCCATCCCTA
TTGATGATCCGTTTCTTGTCGAAAATGTACAAAGAATCTGTGTTTGTGAT
ACAGATGAATGGGTAAAGAACCATGATATTCTTTTGTTCTGGCAAGTCAA
GCCTGTAGTTCAAGTCTTTCAGCTTAGTGAGGAAGGACCCTGTGAGGAAC
TTAGTGGGGATGGCCAGCTGTCTAGCTTTAATGAATGGATTCTTCCTGCC
AAGGAATTTGATGGCATGTGGGAAAGCCTGATTTATGAATCTGGTCTCAA
GCAAAGGTTATTGCACTATGCAGCAAGTGCATTGATGTTCGCTGAGAAGG
GTGTTAATCCTTTCCTCGTGTCATGGAACCGCATTGTCCTGTTACATGGA
CCTCCAGGAACTGGGAAAACGTCATTATGTAAAGCATTGGCTCAAAAACT
GTCTATTCGATTCAGCTCCAGATATCCTCAGTGCCAGTTGGTTGAAGTTA
ACGCACACTCTTTATTTAGTAAATGGTTCTCTGAAAGTGGGAAGTTGGTT
GCCAAGCTTTTTCAAAAAATTCAAGAAATGGTAGAGGAAGAAAACAATCT
GGTATTTGTTTTGATTGATGAAGTTGAAAGTCTTGCTGCTGC
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