FC917616

Overview
NameFC917616
Unique NameFC917616
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length860
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC917616 vs. ExPASy Swiss-Prot
Match: ELCL_ARATH (Protein ELC-like OS=Arabidopsis thaliana GN=ELCL PE=2 SV=1)

HSP 1 Score: 293.508 bits (750), Expect = 1.014e-78
Identity = 153/260 (58.85%), Postives = 177/260 (68.08%), Query Frame = 1
Query:   76 QQIQQFLSSVLSQRGPSALPYAEDTKWLIRQHLLTLISTFPSLDPKTATFTHNDGRSVNLLQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTPSGLVSIPYLQNWIYPSSNLVDLVRELSACFSREPPLYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVMSNYGXXXXXXXXXXXXXXXXXXXYGGRXXXXXXTEDQTEVFKRNAVNKLVEMAHADITGMRKAREVEVEXLFSTQA 855
            Q+I QFLSS L+QRGPSALPYAE+TK LIRQHLL LIS++ SLDPKTATFTHNDGRSV LLQADGT+PMPFQGV+YNIPV+IWL+ESYP++PPCVYVNPTRDMIIKRPH +V+PSGLVS+PYLQNWIYPSSNLVDL   LSA FSR+PPLY                              ++ S Y                       R      T+D  EV+K+NA+N++VEM H DI  MR AREVE E L S Q+
Sbjct:    9 QEIHQFLSSALTQRGPSALPYAENTKSLIRQHLLNLISSYTSLDPKTATFTHNDGRSVILLQADGTIPMPFQGVSYNIPVVIWLLESYPQYPPCVYVNPTRDMIIKRPHSNVSPSGLVSLPYLQNWIYPSSNLVDLASHLSAAFSRDPPLY-------------------SQRRPPPQPSPSIGSGY----------------------SRPLPPRQTDDAAEVYKKNAINRIVEMVHGDIVLMRSAREVETEGLLSLQS 227          
BLAST of FC917616 vs. ExPASy Swiss-Prot
Match: ELC_ARATH (Protein ELC OS=Arabidopsis thaliana GN=ELC PE=1 SV=1)

HSP 1 Score: 277.33 bits (708), Expect = 7.518e-74
Identity = 126/151 (83.44%), Postives = 140/151 (92.72%), Query Frame = 1
Query:   76 QQIQQFLSSVLSQRGPSALPYAEDTKWLIRQHLLTLISTFPSLDPKTATFTHNDGRSVNLLQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTPSGLVSIPYLQNWIYPSSNLVDLVRELSACFSREPPLY 528
            QQ+QQFLSS LSQRGPS++PY E  KWLIRQHLL LIS++PSL+PKTA+F HNDGRSVNLLQADGT+PMPF GVTYNIPVIIWL+ESYPRHPPCVYVNPT DMIIKRPH HVTPSGLVS+PYLQNW+YPSSNLVDLV +LSA F+R+PPLY
Sbjct:    9 QQVQQFLSSALSQRGPSSVPYEESNKWLIRQHLLNLISSYPSLEPKTASFMHNDGRSVNLLQADGTIPMPFHGVTYNIPVIIWLLESYPRHPPCVYVNPTADMIIKRPHAHVTPSGLVSLPYLQNWVYPSSNLVDLVSDLSAAFARDPPLY 159          
BLAST of FC917616 vs. ExPASy Swiss-Prot
Match: UEVLD_XENTR (Ubiquitin-conjugating enzyme E2 variant 3 OS=Xenopus tropicalis GN=uevld PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.998e-22
Identity = 51/121 (42.15%), Postives = 72/121 (59.50%), Query Frame = 1
Query:  166 QHLLTLISTFPSLDPKTATFTHNDGRSVNLLQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTPSGLVSIPYLQNWIYPSSNLVDLVRELSACFSREPPLY 528
            + L  L  TFPS      T+T  DG   +LL   GTVPM  QG TYNIP+ +W+++S+P  PP  ++ P+ +M I R   H+   G + +PYLQNW +P S +  L+RE++  F  E PLY
Sbjct:   23 EELKDLNRTFPSFIFSMETYTFRDGSQKDLLNLTGTVPMKHQGTTYNIPICLWILDSHPFAPPLCFLKPSGNMGI-RVGRHIDAQGRIYLPYLQNWSHPKSTVTGLIREMAVKFEEELPLY 142          
BLAST of FC917616 vs. ExPASy Swiss-Prot
Match: TS101_HUMAN (Tumor susceptibility gene 101 protein OS=Homo sapiens GN=TSG101 PE=1 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 5.113e-22
Identity = 45/118 (38.14%), Postives = 74/118 (62.71%), Query Frame = 1
Query:  175 LTLISTFPSLDPKTATFTHNDGRSVNLLQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTPSGLVSIPYLQNWIYPSSNLVDLVRELSACFSREPPLY 528
            + +I+ +  L P   ++  NDG S  L+   GT+P+P++G TYNIP+ +WL+++YP +PP  +V PT  M IK    HV  +G + +PYL  W +P S+L+ L++ +   F  EPP++
Sbjct:   26 VNVITLYKDLKPVLDSYVFNDGSSRELMNLTGTIPVPYRGNTYNIPICLWLLDTYPYNPPICFVKPTSSMTIK-TGKHVDANGKIYLPYLHEWKHPQSDLLGLIQVMIVVFGDEPPVF 142          
BLAST of FC917616 vs. ExPASy Swiss-Prot
Match: TS101_RAT (Tumor susceptibility gene 101 protein OS=Rattus norvegicus GN=Tsg101 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.645e-20
Identity = 43/118 (36.44%), Postives = 73/118 (61.86%), Query Frame = 1
Query:  175 LTLISTFPSLDPKTATFTHNDGRSVNLLQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTPSGLVSIPYLQNWIYPSSNLVDLVRELSACFSREPPLY 528
            + +I+ +  L P   ++  NDG S  L+   GT+P+ ++G  YNIP+ +WL+++YP +PP  +V PT  M IK    HV  +G + +PYL +W +P S L++L++ +   F  EPP++
Sbjct:   26 VNVIAMYKDLKPVLDSYVFNDGSSRELVNLTGTIPVRYRGNIYNIPICLWLLDTYPYNPPICFVKPTSSMTIK-TGKHVDANGKIYLPYLHDWKHPRSELLELIQIMIVIFGEEPPVF 142          
BLAST of FC917616 vs. ExPASy Swiss-Prot
Match: TS101_MOUSE (Tumor susceptibility gene 101 protein OS=Mus musculus GN=Tsg101 PE=1 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 1.645e-20
Identity = 43/118 (36.44%), Postives = 73/118 (61.86%), Query Frame = 1
Query:  175 LTLISTFPSLDPKTATFTHNDGRSVNLLQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTPSGLVSIPYLQNWIYPSSNLVDLVRELSACFSREPPLY 528
            + +I+ +  L P   ++  NDG S  L+   GT+P+ ++G  YNIP+ +WL+++YP +PP  +V PT  M IK    HV  +G + +PYL +W +P S L++L++ +   F  EPP++
Sbjct:   26 VNVIAMYKDLKPVLDSYVFNDGSSRELVNLTGTIPVRYRGNIYNIPICLWLLDTYPYNPPICFVKPTSSMTIK-TGKHVDANGKIYLPYLHDWKHPRSELLELIQIMIVIFGEEPPVF 142          
BLAST of FC917616 vs. ExPASy Swiss-Prot
Match: UEVLD_MOUSE (Ubiquitin-conjugating enzyme E2 variant 3 OS=Mus musculus GN=Uevld PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 4.052e-19
Identity = 46/121 (38.02%), Postives = 69/121 (57.02%), Query Frame = 1
Query:  166 QHLLTLISTFPSLDPKTATFTHNDGRSVNLLQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTPSGLVSIPYLQNWIYPSSNLVDLVRELSACFSREPPLY 528
            + L  +  +FP       T+   D    +LL   GT+P+ +QG TYNIP+  W+++S+P  PP  ++ PT +M I     HV   G + +PYLQNW +P S +V L++E+ A F  E PLY
Sbjct:   23 EELKNVSVSFPHFRYSVDTYVFKDTSQKDLLNFTGTIPVMYQGKTYNIPIRFWILDSHPFAPPICFLKPTANMEIS-VGKHVDAKGRIYLPYLQNWSHPKSAIVGLIKEMIAKFQEELPLY 142          
BLAST of FC917616 vs. ExPASy Swiss-Prot
Match: UEVLD_DANRE (Ubiquitin-conjugating enzyme E2 variant 3 OS=Danio rerio GN=uevld PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.911e-19
Identity = 43/120 (35.83%), Postives = 70/120 (58.33%), Query Frame = 1
Query:  166 QHLLTLISTFPSLDPKTATFTHNDGRSVNLLQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTPSGLVSIPYLQNWIYPSSNLVDLVRELSACFSREPPL 525
            + L  +   +P +     T+T +D    +LL+  G +P+ +QG +YNIP+++WL++S+P  PP  Y+ PT  M+I R   HV   G + +P L NW +P S++  L+ E+   F  EPPL
Sbjct:   23 EELQKVYRVYPDMKIMAGTYTSSDSLQKDLLKLVGNIPVVYQGRSYNIPILLWLLDSFPFTPPICYLRPTSSMVI-REGKHVDSKGRIHLPALHNWDHPKSSVNALLAEMIGKFEEEPPL 141          
BLAST of FC917616 vs. ExPASy Swiss-Prot
Match: UEVLD_HUMAN (Ubiquitin-conjugating enzyme E2 variant 3 OS=Homo sapiens GN=UEVLD PE=1 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 2.626e-18
Identity = 44/112 (39.29%), Postives = 65/112 (58.04%), Query Frame = 1
Query:  193 FPSLDPKTATFTHNDGRSVNLLQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTPSGLVSIPYLQNWIYPSSNLVDLVRELSACFSREPPLY 528
            FP       T+   D    +LL   GT+P+ +QG TYNIP+  W+++S+P  PP  ++ PT +M I     HV   G + +PYLQNW +P S +V L++E+ A F  E P+Y
Sbjct:   32 FPHFKYSMDTYVFKDSSQKDLLNFTGTIPVMYQGNTYNIPIRFWILDSHPFAPPICFLKPTANMGI-LVGKHVDAQGRIYLPYLQNWSHPKSVIVGLIKEMIAKFQEELPMY 142          
BLAST of FC917616 vs. ExPASy Swiss-Prot
Match: TS101_DICDI (ESCRT-I complex subunit tsg101 OS=Dictyostelium discoideum GN=tsg101 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.262e-12
Identity = 36/98 (36.73%), Postives = 56/98 (57.14%), Query Frame = 1
Query:  160 IRQHLLTLISTFPSLDPKTATFTHNDGRSVNLLQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTPSGLVSIPYLQNW 453
            I + L      FP+L P    F  N    VNL+   GT+P+ F+G+ Y +P+I+W+  +YP+  P + ++PT +M I + H HV   GLV  PY+ +W
Sbjct:   47 ISKDLKETFHLFPNLSP----FYENIPNRVNLICIKGTIPICFKGINYYLPIIVWVPLNYPQEFPTMVLDPTPEMRIVKNHHHVNLQGLVYHPYISSW 140          
The following BLAST results are available for this feature:
BLAST of FC917616 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
ELCL_ARATH1.014e-7858.85Protein ELC-like OS=Arabidopsis thaliana GN=ELCL P... [more]
ELC_ARATH7.518e-7483.44Protein ELC OS=Arabidopsis thaliana GN=ELC PE=1 SV... [more]
UEVLD_XENTR2.998e-2242.15Ubiquitin-conjugating enzyme E2 variant 3 OS=Xenop... [more]
TS101_HUMAN5.113e-2238.14Tumor susceptibility gene 101 protein OS=Homo sapi... [more]
TS101_RAT1.645e-2036.44Tumor susceptibility gene 101 protein OS=Rattus no... [more]
TS101_MOUSE1.645e-2036.44Tumor susceptibility gene 101 protein OS=Mus muscu... [more]
UEVLD_MOUSE4.052e-1938.02Ubiquitin-conjugating enzyme E2 variant 3 OS=Mus m... [more]
UEVLD_DANRE6.911e-1935.83Ubiquitin-conjugating enzyme E2 variant 3 OS=Danio... [more]
UEVLD_HUMAN2.626e-1839.29Ubiquitin-conjugating enzyme E2 variant 3 OS=Homo ... [more]
TS101_DICDI1.262e-1236.73ESCRT-I complex subunit tsg101 OS=Dictyostelium di... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA38CE11RM2 IVIA1 Citrus clementina cDNA clone IC0AAA38CE11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC917616 ID=FC917616; Name=FC917616; organism=Citrus clementina; type=EST; length=860bp
CTCTCAGATTATAACTTATCAAGAAACGACGTCGTAGAAATGGTGCCACC
GGCGGGGACTCCTCCACCAAACCCACAGCAAATACAGCAATTCCTCTCAT
CGGTCCTCTCCCAGCGGGGCCCATCCGCTCTTCCGTACGCCGAAGACACC
AAATGGCTAATCCGCCAGCACCTCCTAACCCTAATCTCCACTTTCCCTTC
GCTCGACCCGAAAACGGCGACGTTCACCCACAACGACGGCCGATCCGTCA
ACCTCCTCCAGGCCGACGGCACCGTCCCCATGCCTTTCCAAGGCGTTACT
TACAACATCCCCGTCATCATCTGGCTCATGGAGTCTTACCCCCGCCACCC
GCCTTGCGTCTACGTGAACCCCACGCGCGACATGATCATCAAACGCCCCC
ACCCCCACGTCACACCCTCGGGCCTCGTGTCGATCCCCTATTTGCAGAAT
TGGATCTACCCGAGCTCTAACCTTGTCGATCTCGTGCGCGAGTTGAGCGC
GTGCTTCTCACGTGAGCCCCCTCTTTACTCGCAGCGCCGCCCCAGCCCCA
GCCCGAACTCCAATCCTAACCATAACCCTAACCCTAACCCTAACCCTAGC
CATAACCAAAGCAATCCCGCCGTTATGTCGAATTATGGACCCTCGCCGTC
ACCACAGGCGAGACCTCAGCCAGCGCGACCGTTTCCTCCGTCTCCGTACG
GTGGCCGGCCTCAGCCTCAGCCGCAGACGGAGGATCAGACGGAGGTTTTT
AAACGAAACGCTGTGAACAAGTTGGTCGAAATGGCGCACGCAGATATTAC
GGGGATGAGGAAAGCGCGTGAGGTGGAGGTGGAANGCTTGTTCAGTACGC
AAGCTTTGTT
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