FC917617

Overview
NameFC917617
Unique NameFC917617
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length926
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC917617 vs. ExPASy Swiss-Prot
Match: GL8D1_MOUSE (Glycosyltransferase 8 domain-containing protein 1 OS=Mus musculus GN=Glt8d1 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.409e-12
Identity = 72/310 (23.23%), Postives = 124/310 (40.00%), Query Frame = 3
Query:   42 MPLRQCLFILWLIALVLGLXXXXXXXXXISQRFKEAPQFYNSPDCPSISSIEFELDEGEEHIFCSDEAVHVAMTLDSAYIRGSMAAILSVLQHSSCPQNIAFHFVTSAKANASLLRATIST-SFPYLKFRVHPFDDSSVSGLISTSIRSALDC-PLNYARSYLANLLPLCVRRXXXXXXXXXXXXXIAKLAATDLGNSSVLAAPEYCNANFT-----------SYFTPTFWSNHALSLTFANRKACYFNTGVMVIDLDRWRAGDYTTKIEEWMELQKRMRIYE---LGSL--PPFLLVFAGNIAAVDHRW 917
            M  R+   I+W++A+VL L         +S   K      +      +  I+F     +  +    E + V +      + G++AAI SV  H +   N+ F+ VT   + A  LR+ +++ S   +++++  FD   + G +           PL +AR YL  L+P   ++             I  L  T L      A  E C++  T           +Y     +    +         C FN GV V +L  W+  + T ++E+WM+L     +Y     GS+  PP L+VF    + +D  W
Sbjct:    1 MSFRKVNIIIWVLAVVLFLLVLHHNFLSLSSLLKND---ISDSGIVGLQPIDFVASAHQHPVSERQEEIPVVIAASEDRLGGTIAAINSV--HQNTRSNVMFYIVTF-NSTADHLRSWLNSGSLKSIRYKIVNFDTKLLEGKVKQDPDQGESMKPLTFARFYLPILVP-SAKKAIYMDDDVIVQGDILALYNTPLKPGHAAAFSEDCDSASTKVIIRGAGNQYNYIGYLDYKKERIRKLSMKASTCSFNPGVFVANLTEWKRQNVTNQLEKWMKLNVEEGLYSRTLAGSITTPPLLIVFYQQHSTIDPMW 303          
BLAST of FC917617 vs. ExPASy Swiss-Prot
Match: GL8D1_RAT (Glycosyltransferase 8 domain-containing protein 1 OS=Rattus norvegicus GN=Glt8d1 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 9.154e-12
Identity = 68/309 (22.01%), Postives = 119/309 (38.51%), Query Frame = 3
Query:   42 MPLRQCLFILWLIALVLGLXXXXXXXXXISQRFKEAPQFYNSPDCPSISSIEFELDEGEEHIFCSDEAVHVAMTLDSAYIRGSMAAILSVLQHSSCPQNIAFHFVTSAKANASLLRATISTSFPYLKFRVHPFDDSSVSGLISTSIRSALDC-PLNYARSYLANLLPLCVRRXXXXXXXXXXXXXIAKLAATDLGNSSVLAAPEYCNANFT-----------SYFTPTFWSNHALSLTFANRKACYFNTGVMVIDLDRWRAGDYTTKIEEWMELQKRMRIYE---LGSL--PPFLLVFAGNIAAVDHRW 917
            M  R+   I+W +A++L L         +S   +      +      +  I+F  +  +  +    E + V +      + G++AAI S+  H +   N+ F+ VT  +    L     S S   +++++  FD   + G +           PL +AR YL  L+P   ++             I  L  T L      A  E C++  T           +Y     +    +         C FN GV V +L  W+  + T ++E+WM+L     +Y     GS+  PP L+VF    + +D  W
Sbjct:    1 MSFRKVTIIIWALAVILFLLALHHNFLSLSSLLRND---VSDSGIVGLQPIDFTANFHQHPVNERQEEIPVVIAASEDRLGGTIAAINSI--HQNTRSNVIFYIVTFNRTADHLRSWLNSGSLKSIRYKIVNFDTKLLEGKVKEDPDQGESMKPLTFARFYLPILVP-SAKKAIYMDDDVIVQGDILALYNTPLKPGHAAAFSEDCDSASTKVMIRGAGNQYNYIGYLDYKKERIRKLSMKASTCSFNPGVFVANLTEWKRQNVTNQLEKWMKLNVEEGLYSRTLAGSITTPPLLIVFYQQHSTIDPMW 303          
BLAST of FC917617 vs. ExPASy Swiss-Prot
Match: GL8D1_DANRE (Glycosyltransferase 8 domain-containing protein 1 OS=Danio rerio GN=glt8d1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.543e-11
Identity = 62/245 (25.31%), Postives = 103/245 (42.04%), Query Frame = 3
Query:  234 SDEAVHVAMTLDSAYIRGSMAAILSVLQHSSCPQNIAFHFVTSAKANASLLRATISTSFPYLKFRVHPFDDSSVSGLISTSIRSALDC-PLNYARSYLANLLPLCVRRXXXXXXXXXXXXXIAKLAATDLGNSSVLAAPEYCNA-----------NFTSYFTPTFWSNHALSLTFANRKACYFNTGVMVIDLDRWRAGDYTTKIEEWMELQKRMRIY-----ELGSLPPFLLVFAGNIAAVDHRW 917
            S E + V +T     +  ++ A+ S+ ++S    N+ F+ VT    N S++  +   S   LK ++  FD S + G I T  +      PL +AR Y+   LP    +             I +L  T L +  V A  E C++           N  SY     +   A+         C FN GV V +L  W+  + T+++E WME   +  +Y     +  + PP L+VF  + + +D  W
Sbjct:   61 SGEEIPVLITAPEERLGAAVTAMNSIYRNSKA--NVVFNIVT---LNESVVHLSTWLSKTDLKHKIIVFDPSILLGKIPTDAQKMETVRPLTFARFYMPAFLP-DAEKAIYLDDDVIVQGDIRELFNTSLKSGHVAAFSEDCDSASSKGIVRGAGNQNSYIGYLDFKKEAIKKLGMRANTCSFNPGVFVANLTEWKQQNVTSQLEFWMERNAKEDLYSKTLADCMTTPPMLIVFYKHHSNIDPMW 299          
The following BLAST results are available for this feature:
BLAST of FC917617 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
GL8D1_MOUSE2.409e-1223.23Glycosyltransferase 8 domain-containing protein 1 ... [more]
GL8D1_RAT9.154e-1222.01Glycosyltransferase 8 domain-containing protein 1 ... [more]
GL8D1_DANRE4.543e-1125.31Glycosyltransferase 8 domain-containing protein 1 ... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA83DE11RM1 IVIA1 Citrus clementina cDNA clone IC0AAA83DE11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC917617 ID=FC917617; Name=FC917617; organism=Citrus clementina; type=EST; length=926bp
TTTCAAAATTAAAACCTTCACAATCACACACACTATCAGCTATGCCTCTT
CGTCAATGTTTGTTCATCCTCTGGCTGATCGCTCTCGTTTTGGGGCTGGC
AACCACAGCCAATGCTACCACCACAATCAGTCAACGATTCAAAGAAGCGC
CACAATTCTACAACTCGCCGGACTGCCCCTCCATCAGCAGCATTGAATTC
GAACTAGACGAAGGGGAAGAGCACATTTTTTGTTCGGACGAGGCAGTCCA
CGTGGCAATGACCCTGGACAGTGCATACATCCGTGGCTCCATGGCGGCAA
TCCTCTCAGTACTCCAACACTCCTCCTGCCCTCAGAACATCGCCTTCCAT
TTCGTCACCTCGGCCAAGGCCAACGCGTCACTCCTACGCGCCACAATCTC
CACCTCCTTCCCTTACCTGAAGTTCCGAGTCCACCCTTTCGACGACTCAT
CAGTGTCGGGTCTCATCTCCACGTCCATCCGGTCGGCCCTCGACTGCCCG
CTAAACTACGCCCGGAGCTACTTAGCCAACCTCCTGCCTCTCTGCGTGCG
ACGTGTCGTCTACCTCGACTCAGATTTAGTGCTAGTGGACGACATCGCGA
AACTGGCAGCTACTGATCTGGGCAACAGCTCGGTGCTGGCAGCTCCAGAA
TACTGCAACGCGAATTTCACATCGTATTTTACGCCAACGTTCTGGTCAAA
CCATGCACTGTCACTGACGTTCGCGAACAGGAAGGCGTGCTACTTCAACA
CGGGGGTGATGGTGATAGATCTTGATCGATGGAGGGCGGGGGATTACACG
ACCAAGATTGAAGAATGGATGGAGTTGCAGAAGAGGATGAGAATATACGA
GCTGGGTTCGTTGCCGCCCTTCTTGTTGGTCTTTGCAGGCAACATAGCGG
CGGTTGATCATCGCTGGGAACCACAC
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