FC917621

Overview
NameFC917621
Unique NameFC917621
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length852
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC917621 vs. ExPASy Swiss-Prot
Match: FBK69_ARATH (F-box/kelch-repeat protein At3g24760 OS=Arabidopsis thaliana GN=At3g24760 PE=2 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 1.898e-61
Identity = 130/266 (48.87%), Postives = 162/266 (60.90%), Query Frame = 1
Query:   31 MSDHNPY---SAFTTLSTDITERILSLLPIPTLIRASSVCKSWRSIISAPSFSALIAHNTNASPRPWFFLFGLHNTSSRNNQSFAFDPASNSWFHLPPAQEPRAGSCFIGANGXXXXXXPRFGFSRILNTSWHLTSPLRFSRINPLVGVFYDPDRGHCDLASGFACNLPKXXXXXXXXXXXXXXDIEDRLAVEIYDPHSDSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFGIYSFSVSSFDLKKHVWSEVQTLRPPGVMFSFL 819
            MSD+NP    S F  L+ D+TE IL  LPIP+L+R + V K WRS+I++   S     + + S  PW FLFG+HNTSS +NQSFAFDP SN+W  LPP+    +    +G+N       PRF FS IL  +W  TSP+RF RINPL+ VF                N  K              DIE+RLAV+IYDP  DSWELC PLPADFRSG   Q L+SALF+ RFYVF  YS  +SSF L  + WS+VQTL+PPG+ F++L
Sbjct:    1 MSDNNPEIESSTFNNLNIDVTESILYHLPIPSLVRFTLVSKQWRSLITSLPPSP----SPSPSSPPWLFLFGIHNTSSFHNQSFAFDPLSNTWLRLPPSSS--SSDHLVGSNRFLFTTAPRFSFSPILKPNWRFTSPVRFPRINPLLTVFTT------------LSNSSKLILVGGSSRIGGLVDIEERLAVQIYDPVLDSWELCSPLPADFRSGQDHQTLTSALFKRRFYVFDNYSCFISSFCLDSYTWSDVQTLKPPGLSFAYL 248          
BLAST of FC917621 vs. ExPASy Swiss-Prot
Match: FBK9_ARATH (F-box/kelch-repeat protein At1g23390 OS=Arabidopsis thaliana GN=At1g23390 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.630e-12
Identity = 69/253 (27.27%), Postives = 103/253 (40.71%), Query Frame = 1
Query:   61 TTLSTDITERILSLLPIPTLIRASSVCKSWRSIISAPSFSALIAHNTNASPRPWFFLFGLHNTS--SRNNQSFAFDPASNSWFHLPPAQEPRAGSCFIGANG---XXXXXXPRFGFSR-ILNTSWHLTSPLRFSRINPLVGVFYDPDRGHCDLASGFACNLPKXXXXXXXXXXXXXXDIEDRLAVEIYDPHS--DSWELCPPLPADFRSGYSSQYLSSALFRGRFYVFGIYSFSVSSFDLKKHVWSEVQTLRP 795
            +++  DI E ILS LP+  L  A  V KSW   +    F +L    T     PW F++   N+   +    + A+DP S +W  L  A  P        ++           RF FS    + +W   +P R  RI+P+V V      G   + +G  C+                   EDR AVE++D  S   +WE C  +P       SS +LS A+   + YV    S    SF+     W+++  L P
Sbjct:   18 SSIDGDILESILSYLPLLDLDSACQVSKSWNRAV----FYSLRRLKT----MPWLFVYNQRNSPPYTMATMAMAYDPKSEAWIELNTASSPVEHVSVARSSHSTLLYALSPARFSFSTDAFHLTWQHVAPPRVWRIDPIVAVV-----GRSLIIAGGVCDFE-----------------EDRFAVELFDIESGDGAWERCESMPDFLYESASSTWLSVAVSSEKMYVTEKRSGVTCSFNPVTRSWTKLLDLCP 240          
The following BLAST results are available for this feature:
BLAST of FC917621 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
FBK69_ARATH1.898e-6148.87F-box/kelch-repeat protein At3g24760 OS=Arabidopsi... [more]
FBK9_ARATH3.630e-1227.27F-box/kelch-repeat protein At1g23390 OS=Arabidopsi... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA83DE12RM1 IVIA1 Citrus clementina cDNA clone IC0AAA83DE12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC917621 ID=FC917621; Name=FC917621; organism=Citrus clementina; type=EST; length=852bp
AAAAAGGGTGGGAACAAAAAAAAAAAAAAAATGTCAGACCACAATCCGTA
CTCCGCCTTCACAACCCTGAGCACCGACATAACCGAACGTATTCTCTCCC
TTCTCCCAATTCCGACTCTCATTCGGGCCTCTTCCGTCTGCAAATCTTGG
CGCTCCATTATTTCGGCTCCGTCTTTCTCTGCTCTCATCGCCCACAACAC
CAACGCAAGCCCTCGCCCTTGGTTCTTCCTCTTTGGCCTCCACAACACCT
CTTCAAGGAACAACCAGTCTTTCGCCTTTGACCCCGCCTCCAACTCCTGG
TTCCACCTCCCTCCCGCCCAAGAACCCCGCGCCGGTTCTTGCTTCATTGG
CGCCAACGGTTTCTTCTTCACCACCACCCCGAGATTCGGCTTCTCTCGCA
TCCTCAACACCTCTTGGCACCTCACTTCCCCGCTTCGCTTCTCGAGAATC
AATCCCCTCGTGGGTGTCTTTTATGACCCCGATCGCGGTCATTGTGATTT
GGCTTCTGGGTTTGCCTGTAACTTGCCTAAATTTATCGTTGTAGGTGGGG
TCAGATTCATTGGCGGCCTTGTTGATATTGAAGATCGATTAGCTGTTGAG
ATTTATGATCCCCATTCGGATTCTTGGGAGTTATGTCCCCCTTTGCCTGC
CGACTTCAGGTCTGGATATTCAAGCCAATATTTATCCTCTGCTTTGTTCC
GAGGGAGATTCTATGTTTTTGGTATCTATTCCTTTTCTGTTTCGTCTTTT
GATTTGAAAAAACATGTTTGGAGTGAGGTTCAGACTCTTAGGCCACCTGG
GGTTATGTTTTCTTTCTTGATTGCTTCTCAAATATGCTTGTTTTGGCTGG
GA
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