FC917623

Overview
NameFC917623
Unique NameFC917623
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length858
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC917623 vs. ExPASy Swiss-Prot
Match: TL19_ARATH (Thylakoid lumenal 19 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=At3g63540 PE=1 SV=2)

HSP 1 Score: 261.151 bits (666), Expect = 5.575e-69
Identity = 122/174 (70.11%), Postives = 142/174 (81.61%), Query Frame = 1 
Query:  193 EPAQTYHLXXXXXXXXXXXXXXXXXXDKKASAEYIYDVPDGWKERLVSKVEKGTNGTDSEFYNPKKRTEKEYLTFLAGFRQLAPKDAVLNNLALSDVDLQDLLASADKVASEEKKDDKGQLYYVYEIDGVGSHSLISVTCANNKLYAHFVNAPTPEWNRDEETLRHVHESFRTV 714
            E  QTY +                  D+K SAEY+YDVP+GWKERLVSKVEKGTNGTDSEFYNPKK+TEKEYLTFLAGFRQLAP+D +LNNLALSDV+LQDL+A ADKV SEE+KD+ GQ+YY+YEIDGVG HSLI+VTC+ N+LYAHFVNAP PEWNRD +TL H+ +SF+TV
Sbjct:   53 EGNQTYKIYYGTAASAANYGGYGGNSDRKTSAEYVYDVPEGWKERLVSKVEKGTNGTDSEFYNPKKKTEKEYLTFLAGFRQLAPRDVILNNLALSDVELQDLIAGADKVVSEERKDETGQVYYLYEIDGVGKHSLITVTCSKNRLYAHFVNAPAPEWNRDHDTLTHLRDSFKTV 226
The following BLAST results are available for this feature:
BLAST of FC917623 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TL19_ARATH5.575e-6970.11Thylakoid lumenal 19 kDa protein, chloroplastic OS... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA6DD03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA6DD03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC917623 ID=FC917623; Name=FC917623; organism=Citrus clementina; type=EST; length=858bp
CGACATTCTATGGCCGCGATACTCTCACCGTCGTCGCCCATCATCTCCTC
GTCCGCCACAACCACCGCCTGCAAAACCCCAACAAAACCACCCCACTCTT
CTCTCTTCACACCCACCAAACAATCTCTCACTTCCCTACTGACGGCTACT
TTAGCAACCACCACGCTCTTAACAGCTTCGCCATCATTAGCTGAGCCTGC
ACAAACATACCACCTCTACTACGGCACAGCCGCCAGCGCAGCAAACTATG
GCGGATACGGCGGTAACTCCGACAAGAAAGCCTCCGCTGAGTACATTTAC
GATGTCCCAGATGGATGGAAAGAGCGTTTGGTGTCGAAGGTTGAGAAGGG
TACAAATGGAACAGACAGTGAGTTTTATAACCCTAAGAAGAGAACTGAGA
AAGAGTACTTGACGTTCTTGGCGGGGTTTCGGCAGCTCGCGCCAAAAGAT
GCTGTGTTGAATAATCTTGCTTTGAGTGATGTGGATTTGCAGGACTTGTT
AGCGAGCGCTGATAAGGTGGCTTCTGAGGAGAAGAAGGATGATAAAGGAC
AGCTTTATTATGTGTATGAGATTGATGGTGTTGGTTCTCATAGCTTGATA
AGTGTTACTTGCGCTAACAATAAGCTTTATGCACATTTTGTTAATGCACC
GACGCCCGAGTGGAATCGAGACGAAGAGACCTTGAGGCATGTTCATGAAT
CTTTTAGGACTGTTCAGTAAGAGTTTGGTGTGGTCATTTAATTGAGTGAA
ATGAAGTTTATTCGATATGTTCGTTTATGTGTAATATTCAGTCTTTTTAA
TCTTCAATTATAAATTTGAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAA
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