FC917624

Overview
NameFC917624
Unique NameFC917624
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length805
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC917624 vs. ExPASy Swiss-Prot
Match: COQ2_RAT (Para-hydroxybenzoate--polyprenyltransferase, mitochondrial OS=Rattus norvegicus GN=Coq2 PE=2 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 8.364e-48
Identity = 95/180 (52.78%), Postives = 112/180 (62.22%), Query Frame = 1
Query:  265 PRQARAYAKLARLDKPIGTWLLAWPCMWSITMAAPPGHFPDFKMMXXXXXXXXXXXXXXCTVNDLLDRDIDNMVERTRLRPIASGLLTPXXXXXXXXXXXXXXXXXXXXXNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTLVY 804
            PR  + Y +L RLDKPIGTWLL  PC WSI +AA PG FPD+ M+              CT+ND+ DRD D  VERT  RPIA+G ++                      N +S  +GA+SLLLV +YPLMKR TFWPQ  LGLTFNWGALLGW+AVKGS D AV  P+Y SGV WTL+Y
Sbjct:   68 PRPLQPYLRLMRLDKPIGTWLLYLPCTWSIGLAADPGCFPDWYMLSLFGTGAILMRGAGCTINDMWDRDFDKKVERTANRPIAAGDISAFQSFVFLGAQLTLALGVLLHLNYYSIAMGAASLLLVVTYPLMKRVTFWPQLALGLTFNWGALLGWSAVKGSCDPAVCLPLYFSGVMWTLIY 247          
BLAST of FC917624 vs. ExPASy Swiss-Prot
Match: COQ2_MOUSE (Para-hydroxybenzoate--polyprenyltransferase, mitochondrial OS=Mus musculus GN=Coq2 PE=2 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 3.178e-47
Identity = 94/180 (52.22%), Postives = 111/180 (61.67%), Query Frame = 1
Query:  265 PRQARAYAKLARLDKPIGTWLLAWPCMWSITMAAPPGHFPDFKMMXXXXXXXXXXXXXXCTVNDLLDRDIDNMVERTRLRPIASGLLTPXXXXXXXXXXXXXXXXXXXXXNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTLVY 804
            PR  + Y +L RLDKPIGTWLL  PC WSI +AA PG FPD+ M+              CT+ND+ DRD D  V RT  RPIA+G ++                      N +S  +GA+SLLLV +YPLMKR TFWPQ  LGLTFNWGALLGW+AVKGS D AV  P+Y SGV WTL+Y
Sbjct:   68 PRPLQPYLRLMRLDKPIGTWLLYLPCTWSIGLAADPGCFPDWYMLSLFGTGAILMRGAGCTINDMWDRDFDKKVTRTANRPIAAGDISTFQSFVFLGGQLTLALGVLLCLNYYSIAMGAASLLLVVTYPLMKRITFWPQLALGLTFNWGALLGWSAVKGSCDPAVCLPLYFSGVMWTLIY 247          
BLAST of FC917624 vs. ExPASy Swiss-Prot
Match: COQ2_BOVIN (Para-hydroxybenzoate--polyprenyltransferase, mitochondrial OS=Bos taurus GN=COQ2 PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 7.828e-46
Identity = 91/180 (50.56%), Postives = 110/180 (61.11%), Query Frame = 1
Query:  265 PRQARAYAKLARLDKPIGTWLLAWPCMWSITMAAPPGHFPDFKMMXXXXXXXXXXXXXXCTVNDLLDRDIDNMVERTRLRPIASGLLTPXXXXXXXXXXXXXXXXXXXXXNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTLVY 804
            PR  + Y +L RLDKPIGTWLL  PC WSI +AA PG  PD+ M+              CT+ND+ DRD D  V RT  RPIA+G ++                      N +S  LGA+SLLLV +YPLMKR T+WPQ  LGLTFNWGALLGW+AVKGS D +V  P+Y SG+ WTL+Y
Sbjct:   68 PRPLQPYLRLMRLDKPIGTWLLYLPCTWSIGLAADPGCLPDWYMLSLFGTGAVLMRGAGCTINDMWDRDYDKKVTRTASRPIAAGDISTFRSFVFLGGQLTLALGVLLCLNYYSIALGAASLLLVTTYPLMKRITYWPQLALGLTFNWGALLGWSAVKGSCDPSVCLPLYFSGIMWTLIY 247          
BLAST of FC917624 vs. ExPASy Swiss-Prot
Match: COQ2_HUMAN (Para-hydroxybenzoate--polyprenyltransferase, mitochondrial OS=Homo sapiens GN=COQ2 PE=1 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.335e-45
Identity = 90/180 (50.00%), Postives = 110/180 (61.11%), Query Frame = 1
Query:  265 PRQARAYAKLARLDKPIGTWLLAWPCMWSITMAAPPGHFPDFKMMXXXXXXXXXXXXXXCTVNDLLDRDIDNMVERTRLRPIASGLLTPXXXXXXXXXXXXXXXXXXXXXNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTLVY 804
            PR  + Y +L RLDKPIGTWLL  PC WSI +AA PG FPD+ M+              CT+ND+ D+D D  V RT  RPIA+G ++                      N +S  LGA SLLLV +YPLMKR ++WPQ  LGLTFNWGALLGW+A+KGS D +V  P+Y SGV WTL+Y
Sbjct:   68 PRPLQPYLRLMRLDKPIGTWLLYLPCTWSIGLAAEPGCFPDWYMLSLFGTGAILMRGAGCTINDMWDQDYDKKVTRTANRPIAAGDISTFQSFVFLGGQLTLALGVLLCLNYYSIALGAGSLLLVITYPLMKRISYWPQLALGLTFNWGALLGWSAIKGSCDPSVCLPLYFSGVMWTLIY 247          
BLAST of FC917624 vs. ExPASy Swiss-Prot
Match: COQ2_DROME (Para-hydroxybenzoate--polyprenyltransferase, mitochondrial OS=Drosophila melanogaster GN=Coq2 PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 6.627e-45
Identity = 88/177 (49.72%), Postives = 112/177 (63.28%), Query Frame = 1
Query:  274 ARAYAKLARLDKPIGTWLLAWPCMWSITMAAPPGHFPDFKMMXXXXXXXXXXXXXXCTVNDLLDRDIDNMVERTRLRPIASGLLTPXXXXXXXXXXXXXXXXXXXXXNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTLVY 804
            A+ YA+L R+D+PIGT+LL WPC WSI ++A  G +PD  M+              CT+NDL D+DID  VERTRLRP+ASG ++                      N  S +LGASSL LV +YPLMKR T+WPQ  LG+ FNWGALLGW A +GS++LA   P+Y+SGV WT+VY
Sbjct:   77 AKPYAQLMRIDRPIGTYLLFWPCAWSIALSADAGCWPDLTMLGLFGTGALIMRGAGCTINDLWDKDIDAKVERTRLRPLASGQISQFDAIVFLSAQLSLGLLVLVQLNWQSILLGASSLGLVITYPLMKRVTYWPQLVLGMAFNWGALLGWCATQGSVNLAACLPLYLSGVCWTIVY 253          
BLAST of FC917624 vs. ExPASy Swiss-Prot
Match: COQ2_DROPS (Para-hydroxybenzoate--polyprenyltransferase, mitochondrial OS=Drosophila pseudoobscura pseudoobscura GN=coq2 PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 7.327e-44
Identity = 86/176 (48.86%), Postives = 110/176 (62.50%), Query Frame = 1
Query:  277 RAYAKLARLDKPIGTWLLAWPCMWSITMAAPPGHFPDFKMMXXXXXXXXXXXXXXCTVNDLLDRDIDNMVERTRLRPIASGLLTPXXXXXXXXXXXXXXXXXXXXXNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTLVY 804
            + YA+L R+D+PIGT+LL WPC WSI ++A  G +PD  M+              CT+NDL D+DID  VERTR RP+ASG ++                      N  S +LGASSL LV +YPLMKR T+WPQ  LG+ FNWGALLGW A +GS++LA   P+Y+SGV WT+VY
Sbjct:   84 KPYAQLMRIDRPIGTYLLFWPCAWSIALSADAGCWPDLTMLGLFGTGALIMRGAGCTINDLWDKDIDAKVERTRTRPLASGQISQFDAIVFLSAQLSLGLLVLVQLNWQSILLGASSLGLVITYPLMKRVTYWPQLVLGMAFNWGALLGWCATQGSVNLAACLPLYLSGVCWTIVY 259          
BLAST of FC917624 vs. ExPASy Swiss-Prot
Match: COQ2_CAEEL (Para-hydroxybenzoate--polyprenyltransferase, mitochondrial OS=Caenorhabditis elegans GN=coq-2 PE=2 SV=2)

HSP 1 Score: 174.866 bits (442), Expect = 4.749e-43
Identity = 85/180 (47.22%), Postives = 102/180 (56.67%), Query Frame = 1
Query:  265 PRQARAYAKLARLDKPIGTWLLAWPCMWSITMAAPPGHFPDFKMMXXXXXXXXXXXXXXCTVNDLLDRDIDNMVERTRLRPIASGLLTPXXXXXXXXXXXXXXXXXXXXXNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTLVY 804
            P   + Y +L R+DKPIGTWLL WPC WSI MA P G  P   M+              C +NDL D+D D  VERT+LRP+A G LT                      N +S  +GASS+ LV  YPL KRFT+WPQ  LGLTFNWGALLGW A+KG L  +  F MY + + WTL+Y
Sbjct:   59 PPNLKPYLQLMRVDKPIGTWLLYWPCTWSIAMATPAGQLPSIYMLSLFGAGAFLMRSAGCVINDLWDKDFDKKVERTKLRPLACGSLTEKQAIGLLAGLLSSSLAILLQLNWYSVAVGASSMALVVGYPLAKRFTYWPQFVLGLTFNWGALLGWCALKGDLSSSAPFWMYAAALQWTLIY 238          
BLAST of FC917624 vs. ExPASy Swiss-Prot
Match: COQ2_AEDAE (Para-hydroxybenzoate--polyprenyltransferase, mitochondrial OS=Aedes aegypti GN=coq2 PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.805e-42
Identity = 83/174 (47.70%), Postives = 106/174 (60.92%), Query Frame = 1
Query:  283 YAKLARLDKPIGTWLLAWPCMWSITMAAPPGHFPDFKMMXXXXXXXXXXXXXXCTVNDLLDRDIDNMVERTRLRPIASGLLTPXXXXXXXXXXXXXXXXXXXXXNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTLVY 804
            YA+L R+D+PIG+WLL WPC WSI ++AP G +PD   +              CT+ND+ DRDID  V RTR RP+ +G LT                      N +S +LGASSL LV  YPLMKR T WPQ  LG+TFNWGALLGW+A +GS+  +   P+Y++GV WT+VY
Sbjct:  119 YARLMRIDRPIGSWLLFWPCGWSIALSAPAGCWPDLWTLTLFGAGAFIMRGAGCTINDMWDRDIDGKVARTRNRPLVAGELTSADAWFFLGAQLGVGLLILLELNWYSIVLGASSLGLVIIYPLMKRITHWPQLVLGMTFNWGALLGWSATQGSVMWSACLPLYVAGVCWTIVY 292          
BLAST of FC917624 vs. ExPASy Swiss-Prot
Match: COQ2_DICDI (Para-hydroxybenzoate--polyprenyltransferase, mitochondrial OS=Dictyostelium discoideum GN=coq2 PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 4.161e-39
Identity = 82/187 (43.85%), Postives = 109/187 (58.29%), Query Frame = 1
Query:  247 WIDLYLPRQARAYAKLARLDKPIGTWLLAWPCMWSITMAAPPGHFPDFKMMXXXXXXXXXXXXXXCTVNDLLDRDIDNMVERTRLRPIASGLLTPXXXXXXXXXXXXXXXXXXXXXNNFSRI-LGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTLVY 804
            WI  + P   + Y +L+R+DKPIG WLL +PC WSI++AAP G FPD K M              C +ND+ D   D+ VERT+ RPIAS  LT                       N+  I L ASSL +V  YP MKRFT++PQ  LGL FNWGAL G++A+ GS + ++V P+Y++G+ WT+VY
Sbjct:  160 WISKF-PNSVQPYLRLSRVDKPIGVWLLLYPCCWSISLAAPAGSFPDLKTMLVFGIGAYVMRSAGCVINDMADYKFDSKVERTKTRPIASKQLTHKQSLIFLGGQLLASFGLILSSLNYYTIALCASSLPIVVLYPFMKRFTYYPQFVLGLAFNWGALAGYSAIAGSCNWSIVAPLYLAGISWTMVY 345          
BLAST of FC917624 vs. ExPASy Swiss-Prot
Match: COQ2_YEAST (Para-hydroxybenzoate--polyprenyltransferase, mitochondrial OS=Saccharomyces cerevisiae GN=COQ2 PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.653e-27
Identity = 72/190 (37.89%), Postives = 97/190 (51.05%), Query Frame = 1
Query:  262 LPRQARAYAKLARLDKPIGTWLLAWPCMWSI---------TMAAPPGHFPDFKMMXXXXXXXXXXXXXXCTVNDLLDRDIDNMVERTRLRPIASGLLTPXXXXXXXXXXXXXXXXXXXXXNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTLVY 804
            LP++   YA+L RL+KP+GTWLL  PC WSI         T++A  G      M+              CT+ND LDR +D  V R+  RPIASG ++P                           LG +SL +VF+YPL KRFT++PQA L   FNWGALLG+ A+ G +    + P+Y+S   W + Y
Sbjct:   76 LPKKWIPYAELMRLEKPVGTWLLYLPCSWSILMGAMMQGATLSATAG------MLGIFGVGALVMRGAGCTINDFLDRKLDQRVIRSVERPIASGRVSPRRALVFLGAQTLVGMGVLSLLPAQCWWLGLASLPIVFTYPLFKRFTYYPQAALSACFNWGALLGFPAM-GVMSWPTMIPLYLSSYLWCMTY 258          
The following BLAST results are available for this feature:
BLAST of FC917624 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 235
Match NameE-valueIdentityDescription
COQ2_RAT8.364e-4852.78Para-hydroxybenzoate--polyprenyltransferase, mitoc... [more]
COQ2_MOUSE3.178e-4752.22Para-hydroxybenzoate--polyprenyltransferase, mitoc... [more]
COQ2_BOVIN7.828e-4650.56Para-hydroxybenzoate--polyprenyltransferase, mitoc... [more]
COQ2_HUMAN1.335e-4550.00Para-hydroxybenzoate--polyprenyltransferase, mitoc... [more]
COQ2_DROME6.627e-4549.72Para-hydroxybenzoate--polyprenyltransferase, mitoc... [more]
COQ2_DROPS7.327e-4448.86Para-hydroxybenzoate--polyprenyltransferase, mitoc... [more]
COQ2_CAEEL4.749e-4347.22Para-hydroxybenzoate--polyprenyltransferase, mitoc... [more]
COQ2_AEDAE1.805e-4247.70Para-hydroxybenzoate--polyprenyltransferase, mitoc... [more]
COQ2_DICDI4.161e-3943.85Para-hydroxybenzoate--polyprenyltransferase, mitoc... [more]
COQ2_YEAST3.653e-2737.89Para-hydroxybenzoate--polyprenyltransferase, mitoc... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA33CD02RM1 IVIA1 Citrus clementina cDNA clone IC0AAA33CD02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC917624 ID=FC917624; Name=FC917624; organism=Citrus clementina; type=EST; length=805bp
CGCGTTTTCCGGAGGAGCAGATACCTAAAACCATCGTTGTCTCTTCTCCT
CAGCGGCAACAACAATCCATCTAATCCAGTCCTAAACCCTAAACTTAGCC
CTCATGTAGCCAAATTGACGAATCATTACCGTTGGATGCCAAATTCTGAA
CAAAATTTCAGATACGTATGGGTAGCAAGCATCTGTACAACACCGTCGCA
GTCAAGTGTTGAGAAAGAGACTAGTAGTAGTAATGAGAAATCATCGTGGA
TTGACTTGTATTTGCCGAGACAAGCGAGGGCTTATGCGAAGCTGGCTCGG
CTTGATAAGCCGATCGGGACGTGGCTGCTGGCTTGGCCTTGTATGTGGTC
AATTACAATGGCGGCGCCACCTGGACACTTTCCGGATTTCAAAATGATGG
CGCTCTTTGGCTGTGGCGCTCTCCTTCTACGCGGGGCCGGGTGTACCGTT
AATGACCTCCTTGATAGGGATATTGATAATATGGTGGAACGCACAAGGTT
AAGGCCCATTGCGAGTGGTCTTCTAACACCGTTTCAAGGACTTTCTTTTC
TTGGGTTTCAATTGCTTTTAGGTCTTGGGATTCTTCTCCAGTTGAATAAT
TTTAGCCGCATTCTGGGGGCTTCATCTTTGCTGTTAGTCTTCTCCTACCC
CCTCATGAAGAGGTTTACTTTTTGGCCTCAAGCCTATCTAGGTTTGACCT
TCAACTGGGGAGCCTTATTAGGATGGGCTGCAGTCAAAGGGAGTTTAGAT
CTGGCTGTTGTGTTCCCAATGTACATTTCTGGAGTTTTTTGGACTCTCGT
GTATG
back to top