FC917638

Overview
NameFC917638
Unique NameFC917638
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length781
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC917638 vs. ExPASy Swiss-Prot
Match: Y5957_ARATH (Uncharacterized protein At5g39570 OS=Arabidopsis thaliana GN=At5g39570 PE=1 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 1.038e-39
Identity = 103/220 (46.82%), Postives = 119/220 (54.09%), Query Frame = 1 
Query:  130 ITLTYGRPLPPSDETCYPSSSASDGDFDYARPKFSSHSEPSAYADEALNNEYSSYARPKXXXXXXXXXXXXXXXXXXXXXXXAYGIQPGMGRXXXXXXXXXXXXXXXXXAKRPDSQEYGSGYGKRPESE-EYGSGYGRKPDSEVYGSGYGRRPESG-ESGFGGRTESEYGGS-AYGRKPEYESGYGQKPEYESGFGGKPGY-ESGYGSKPEFESGYGRKP 777
            IT+ YGRP+PPSDETCYP SS  D DF+Y RP+F+   EPSAY DEALN EYSSY+RPK                        YG + G GR                   R   Q YGSGYG R E+E EYGSG G + + E     YGRRPESG  SG+GGR+ESEY    +YGR  E E GY +KP Y      + GY +  YG   E E GY RKP
Sbjct:   28 ITVIYGRPIPPSDETCYPLSSGVDDDFEYERPEFTQIHEPSAYGDEALNTEYSSYSRPK-PRPAFRPDSGGGGHVQGERPNPGYGSESGYGRKPESEYGSGYGGQTEVEYGRRPEQSYGSGYGGRTETESEYGSGGGGRTEVE-----YGRRPESGLGSGYGGRSESEYERKPSYGRSEEQEEGY-RKPSYGRSEEQEEGYRKPSYGRSEEQEEGY-RKP 239
The following BLAST results are available for this feature:
BLAST of FC917638 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y5957_ARATH1.038e-3946.82Uncharacterized protein At5g39570 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA33CD05RM1 IVIA1 Citrus clementina cDNA clone IC0AAA33CD05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC917638 ID=FC917638; Name=FC917638; organism=Citrus clementina; type=EST; length=781bp
CAAAAACTAAATAAAACAAAACAAAATCGCGATCGGAACAGAGAAACAAT
GCCGTACTACGCTGACAATGACGATGACGTTACTGATTTCGACGATTACG
ATCCAACACCCTACGATGGTGGATACGACATCACTTTGACTTACGGCCGT
CCTCTGCCACCGTCCGATGAGACTTGTTACCCATCATCGTCGGCGTCAGA
TGGGGACTTCGACTACGCTCGTCCCAAGTTCTCGTCGCACTCGGAGCCTT
CAGCCTACGCTGACGAAGCTCTCAATAACGAGTACAGCTCCTACGCCCGA
CCAAAGCCTCGTCCCGGTTTCGTACCCGGGTCAGGGGGTGGGTCGGGTTA
TGGAGGAAGGCCCCAGCCGCAGCCGGCGTATGGGATTCAGCCTGGAATGG
GAAGGCCCGAACCTTATGGGTCGGGGAGGTCTGAATCTGAATATGGTTCT
GGGTATGCGAAGAGGCCTGATTCGCAGGAATATGGATCTGGGTACGGAAA
GAGACCCGAGTCGGAGGAATATGGATCTGGGTACGGCAGGAAACCTGATT
CCGAGGTGTATGGCTCTGGATATGGGCGGAGACCCGAGTCGGGTGAATCC
GGATTTGGTGGTAGGACTGAGTCCGAGTATGGAGGATCAGCGTATGGACG
AAAACCCGAATATGAGTCCGGTTATGGCCAGAAACCGGAATATGAATCTG
GCTTTGGTGGAAAACCAGGGTACGAGTCTGGATATGGAAGCAAACCCGAA
TTTGAATCCGGATATGGTAGGAAACCCGAGT
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