FC917639
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC917639 vs. ExPASy Swiss-Prot
Match: CHMP1_DICDI (Charged multivesicular body protein 1 OS=Dictyostelium discoideum GN=chmp1 PE=3 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 4.290e-19 Identity = 47/98 (47.96%), Postives = 65/98 (66.33%), Query Frame = 3 Query: 105 NQIMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSL 398 NQ+ LKFTSK L++Q GNMDGARIYA+N+IR++ + +NYLRLASR+DAV +R++T +M ++ SMANIVKS+E S+ Sbjct: 3 NQLFQLKFTSKQLEKQSKKSEQSEKAQKIKLKKAIEQGNMDGARIYAQNAIREKNQSLNYLRLASRIDAVASRVETAIRMKSVTGSMANIVKSMEKSM 100
BLAST of FC917639 vs. ExPASy Swiss-Prot
Match: CHM1B_HUMAN (Charged multivesicular body protein 1b OS=Homo sapiens GN=CHMP1B PE=1 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 2.062e-13 Identity = 41/108 (37.96%), Postives = 63/108 (58.33%), Query Frame = 3 Query: 81 MGNTEKLLNQIMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLAT 404 M N EK + +LKF +K L R GNM+ ARI+AEN+IR++ + +N+LR+++R+DAV AR+ T M + KSMA +VKS++++L T Sbjct: 1 MSNMEK---HLFNLKFAAKELSRSAKKCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIRQKNQAVNFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLKT 105
BLAST of FC917639 vs. ExPASy Swiss-Prot
Match: CHM1B_BOVIN (Charged multivesicular body protein 1b OS=Bos taurus GN=CHMP1B PE=2 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 3.517e-13 Identity = 41/108 (37.96%), Postives = 63/108 (58.33%), Query Frame = 3 Query: 81 MGNTEKLLNQIMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLAT 404 M N EK + +LKF +K L R GNM+ ARI+AEN+IR++ + +N+LR+++R+DAV AR+ T M + KSMA +VKS++++L T Sbjct: 1 MSNMEK---HLFNLKFAAKELGRSAKKCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIRQKNQAVNFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLKT 105
BLAST of FC917639 vs. ExPASy Swiss-Prot
Match: CHM1B_CHICK (Charged multivesicular body protein 1b OS=Gallus gallus GN=CHMP1B PE=2 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 6.000e-13 Identity = 40/106 (37.74%), Postives = 62/106 (58.49%), Query Frame = 3 Query: 81 MGNTEKLLNQIMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSL 398 M N EK + +LKF +K L R GNM+ ARI+AEN+IR++ + +N+LR+++R+DAV AR+ T M + KSMA +VKS++++L Sbjct: 1 MSNMEK---HLFNLKFAAKELNRNSKRCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIRQKNQAINFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATL 103
BLAST of FC917639 vs. ExPASy Swiss-Prot
Match: CHM1B_DANRE (Charged multivesicular body protein 1b OS=Danio rerio GN=chmp1b PE=2 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 7.836e-13 Identity = 39/106 (36.79%), Postives = 62/106 (58.49%), Query Frame = 3 Query: 81 MGNTEKLLNQIMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSL 398 M + EK + +LKF +K LQR GNM+ ARI+AEN+IR++ + +N+LR+++R+DAV AR+ T M + KSMA +VK ++++L Sbjct: 1 MSSMEK---HLFNLKFAAKELQRNSKKCDKEEKAEKVKVKKAIQKGNMEVARIHAENAIRQKNQSVNFLRMSARVDAVAARVQTAVTMNQVTKSMAGVVKGMDATL 103
BLAST of FC917639 vs. ExPASy Swiss-Prot
Match: CH1B1_MOUSE (Charged multivesicular body protein 1b-1 OS=Mus musculus GN=Chmp1b1 PE=1 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 7.836e-13 Identity = 40/106 (37.74%), Postives = 62/106 (58.49%), Query Frame = 3 Query: 81 MGNTEKLLNQIMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSL 398 M N EK + +LKF +K L R GNM+ ARI+AEN+IR++ + +N+LR+++R+DAV AR+ T M + KSMA +VKS++++L Sbjct: 1 MSNMEK---HLFNLKFAAKELNRSSKKCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIRQKNQGVNFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATL 103
BLAST of FC917639 vs. ExPASy Swiss-Prot
Match: CH1B2_MOUSE (Charged multivesicular body protein 1b-2 OS=Mus musculus GN=Chmp1b2 PE=2 SV=2) HSP 1 Score: 72.7886 bits (177), Expect = 2.978e-12 Identity = 39/106 (36.79%), Postives = 61/106 (57.55%), Query Frame = 3 Query: 81 MGNTEKLLNQIMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSL 398 M N EK + +LKF +K L R GN + ARI+AEN+IR++ + +N+LR+++R+DAV AR+ T M + KSMA +VKS++++L Sbjct: 1 MSNMEK---HLFNLKFAAKELNRNAKKCDKEEKAEKAKIKKAIQKGNTEVARIHAENAIRQKNQAINFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATL 103
BLAST of FC917639 vs. ExPASy Swiss-Prot
Match: CHM1A_PONAB (Charged multivesicular body protein 1a OS=Pongo abelii GN=CHMP1A PE=2 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 1.132e-11 Identity = 35/98 (35.71%), Postives = 58/98 (59.18%), Query Frame = 3 Query: 111 IMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLAT 404 + LKFT+K L++ N++ AR+YAEN+IRK+ E +N+LR+ASR+DAV +++ T M + K+MA + K+L+ +L+T Sbjct: 5 LFQLKFTAKQLEKLAKKAEKDSKAEQAKVKKALLQKNVECARVYAENAIRKKNEGVNWLRMASRVDAVASKVQTAVTMKGVTKNMAQVTKALDKALST 102
BLAST of FC917639 vs. ExPASy Swiss-Prot
Match: CHM1A_HUMAN (Charged multivesicular body protein 1a OS=Homo sapiens GN=CHMP1A PE=1 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 1.132e-11 Identity = 35/98 (35.71%), Postives = 58/98 (59.18%), Query Frame = 3 Query: 111 IMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLAT 404 + LKFT+K L++ N++ AR+YAEN+IRK+ E +N+LR+ASR+DAV +++ T M + K+MA + K+L+ +L+T Sbjct: 5 LFQLKFTAKQLEKLAKKAEKDSKAEQAKVKKALLQKNVECARVYAENAIRKKNEGVNWLRMASRVDAVASKVQTAVTMKGVTKNMAQVTKALDKALST 102
BLAST of FC917639 vs. ExPASy Swiss-Prot
Match: CHM1B_XENTR (Charged multivesicular body protein 1b OS=Xenopus tropicalis GN=chmp1b PE=2 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.930e-11 Identity = 38/106 (35.85%), Postives = 61/106 (57.55%), Query Frame = 3 Query: 81 MGNTEKLLNQIMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSL 398 M + EK + +LKF +K L R GN + ARI+AEN+IR++ + +N+LR+++R+DAV AR+ T M + KSMA +VKS++++L Sbjct: 1 MSSMEK---NLFNLKFAAKELHRNAKKCEKEEKTEKAKIKKAIQKGNTEIARIHAENAIRQKNQGINFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDTTL 103 The following BLAST results are available for this feature:
BLAST of FC917639 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 14
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Sequences
The
following sequences are available for this feature:
EST sequence >FC917639 ID=FC917639; Name=FC917639; organism=Citrus clementina; type=EST; length=890bpback to top |