FC917639

Overview
NameFC917639
Unique NameFC917639
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length890
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC917639 vs. ExPASy Swiss-Prot
Match: CHMP1_DICDI (Charged multivesicular body protein 1 OS=Dictyostelium discoideum GN=chmp1 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 4.290e-19
Identity = 47/98 (47.96%), Postives = 65/98 (66.33%), Query Frame = 3
Query:  105 NQIMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSL 398
            NQ+  LKFTSK L++Q                     GNMDGARIYA+N+IR++ + +NYLRLASR+DAV +R++T  +M ++  SMANIVKS+E S+
Sbjct:    3 NQLFQLKFTSKQLEKQSKKSEQSEKAQKIKLKKAIEQGNMDGARIYAQNAIREKNQSLNYLRLASRIDAVASRVETAIRMKSVTGSMANIVKSMEKSM 100          
BLAST of FC917639 vs. ExPASy Swiss-Prot
Match: CHM1B_HUMAN (Charged multivesicular body protein 1b OS=Homo sapiens GN=CHMP1B PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.062e-13
Identity = 41/108 (37.96%), Postives = 63/108 (58.33%), Query Frame = 3
Query:   81 MGNTEKLLNQIMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLAT 404
            M N EK    + +LKF +K L R                      GNM+ ARI+AEN+IR++ + +N+LR+++R+DAV AR+ T   M  + KSMA +VKS++++L T
Sbjct:    1 MSNMEK---HLFNLKFAAKELSRSAKKCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIRQKNQAVNFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLKT 105          
BLAST of FC917639 vs. ExPASy Swiss-Prot
Match: CHM1B_BOVIN (Charged multivesicular body protein 1b OS=Bos taurus GN=CHMP1B PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.517e-13
Identity = 41/108 (37.96%), Postives = 63/108 (58.33%), Query Frame = 3
Query:   81 MGNTEKLLNQIMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLAT 404
            M N EK    + +LKF +K L R                      GNM+ ARI+AEN+IR++ + +N+LR+++R+DAV AR+ T   M  + KSMA +VKS++++L T
Sbjct:    1 MSNMEK---HLFNLKFAAKELGRSAKKCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIRQKNQAVNFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLKT 105          
BLAST of FC917639 vs. ExPASy Swiss-Prot
Match: CHM1B_CHICK (Charged multivesicular body protein 1b OS=Gallus gallus GN=CHMP1B PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 6.000e-13
Identity = 40/106 (37.74%), Postives = 62/106 (58.49%), Query Frame = 3
Query:   81 MGNTEKLLNQIMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSL 398
            M N EK    + +LKF +K L R                      GNM+ ARI+AEN+IR++ + +N+LR+++R+DAV AR+ T   M  + KSMA +VKS++++L
Sbjct:    1 MSNMEK---HLFNLKFAAKELNRNSKRCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIRQKNQAINFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATL 103          
BLAST of FC917639 vs. ExPASy Swiss-Prot
Match: CHM1B_DANRE (Charged multivesicular body protein 1b OS=Danio rerio GN=chmp1b PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.836e-13
Identity = 39/106 (36.79%), Postives = 62/106 (58.49%), Query Frame = 3
Query:   81 MGNTEKLLNQIMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSL 398
            M + EK    + +LKF +K LQR                      GNM+ ARI+AEN+IR++ + +N+LR+++R+DAV AR+ T   M  + KSMA +VK ++++L
Sbjct:    1 MSSMEK---HLFNLKFAAKELQRNSKKCDKEEKAEKVKVKKAIQKGNMEVARIHAENAIRQKNQSVNFLRMSARVDAVAARVQTAVTMNQVTKSMAGVVKGMDATL 103          
BLAST of FC917639 vs. ExPASy Swiss-Prot
Match: CH1B1_MOUSE (Charged multivesicular body protein 1b-1 OS=Mus musculus GN=Chmp1b1 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.836e-13
Identity = 40/106 (37.74%), Postives = 62/106 (58.49%), Query Frame = 3
Query:   81 MGNTEKLLNQIMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSL 398
            M N EK    + +LKF +K L R                      GNM+ ARI+AEN+IR++ + +N+LR+++R+DAV AR+ T   M  + KSMA +VKS++++L
Sbjct:    1 MSNMEK---HLFNLKFAAKELNRSSKKCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIRQKNQGVNFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATL 103          
BLAST of FC917639 vs. ExPASy Swiss-Prot
Match: CH1B2_MOUSE (Charged multivesicular body protein 1b-2 OS=Mus musculus GN=Chmp1b2 PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.978e-12
Identity = 39/106 (36.79%), Postives = 61/106 (57.55%), Query Frame = 3
Query:   81 MGNTEKLLNQIMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSL 398
            M N EK    + +LKF +K L R                      GN + ARI+AEN+IR++ + +N+LR+++R+DAV AR+ T   M  + KSMA +VKS++++L
Sbjct:    1 MSNMEK---HLFNLKFAAKELNRNAKKCDKEEKAEKAKIKKAIQKGNTEVARIHAENAIRQKNQAINFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATL 103          
BLAST of FC917639 vs. ExPASy Swiss-Prot
Match: CHM1A_PONAB (Charged multivesicular body protein 1a OS=Pongo abelii GN=CHMP1A PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.132e-11
Identity = 35/98 (35.71%), Postives = 58/98 (59.18%), Query Frame = 3
Query:  111 IMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLAT 404
            +  LKFT+K L++                       N++ AR+YAEN+IRK+ E +N+LR+ASR+DAV +++ T   M  + K+MA + K+L+ +L+T
Sbjct:    5 LFQLKFTAKQLEKLAKKAEKDSKAEQAKVKKALLQKNVECARVYAENAIRKKNEGVNWLRMASRVDAVASKVQTAVTMKGVTKNMAQVTKALDKALST 102          
BLAST of FC917639 vs. ExPASy Swiss-Prot
Match: CHM1A_HUMAN (Charged multivesicular body protein 1a OS=Homo sapiens GN=CHMP1A PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.132e-11
Identity = 35/98 (35.71%), Postives = 58/98 (59.18%), Query Frame = 3
Query:  111 IMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLAT 404
            +  LKFT+K L++                       N++ AR+YAEN+IRK+ E +N+LR+ASR+DAV +++ T   M  + K+MA + K+L+ +L+T
Sbjct:    5 LFQLKFTAKQLEKLAKKAEKDSKAEQAKVKKALLQKNVECARVYAENAIRKKNEGVNWLRMASRVDAVASKVQTAVTMKGVTKNMAQVTKALDKALST 102          
BLAST of FC917639 vs. ExPASy Swiss-Prot
Match: CHM1B_XENTR (Charged multivesicular body protein 1b OS=Xenopus tropicalis GN=chmp1b PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.930e-11
Identity = 38/106 (35.85%), Postives = 61/106 (57.55%), Query Frame = 3
Query:   81 MGNTEKLLNQIMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSL 398
            M + EK    + +LKF +K L R                      GN + ARI+AEN+IR++ + +N+LR+++R+DAV AR+ T   M  + KSMA +VKS++++L
Sbjct:    1 MSSMEK---NLFNLKFAAKELHRNAKKCEKEEKTEKAKIKKAIQKGNTEIARIHAENAIRQKNQGINFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDTTL 103          
The following BLAST results are available for this feature:
BLAST of FC917639 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
CHMP1_DICDI4.290e-1947.96Charged multivesicular body protein 1 OS=Dictyoste... [more]
CHM1B_HUMAN2.062e-1337.96Charged multivesicular body protein 1b OS=Homo sap... [more]
CHM1B_BOVIN3.517e-1337.96Charged multivesicular body protein 1b OS=Bos taur... [more]
CHM1B_CHICK6.000e-1337.74Charged multivesicular body protein 1b OS=Gallus g... [more]
CHM1B_DANRE7.836e-1336.79Charged multivesicular body protein 1b OS=Danio re... [more]
CH1B1_MOUSE7.836e-1337.74Charged multivesicular body protein 1b-1 OS=Mus mu... [more]
CH1B2_MOUSE2.978e-1236.79Charged multivesicular body protein 1b-2 OS=Mus mu... [more]
CHM1A_PONAB1.132e-1135.71Charged multivesicular body protein 1a OS=Pongo ab... [more]
CHM1A_HUMAN1.132e-1135.71Charged multivesicular body protein 1a OS=Homo sap... [more]
CHM1B_XENTR1.930e-1135.85Charged multivesicular body protein 1b OS=Xenopus ... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA67BH03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA67BH03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC917639 ID=FC917639; Name=FC917639; organism=Citrus clementina; type=EST; length=890bp
CAAAAAGTCGTCTTCGATCAAAATCCCCAATTCTTTGAAACCCTTGCTTG
ATTCAATTCTCAGATCCGAAACATTTCGCGATGGGAAACACGGAGAAGCT
GTTGAATCAGATCATGGACTTGAAATTCACCTCAAAATCTCTTCAACGCC
AGGCGAGAAAATGCGAGAAGGAAGAGAAAGCCGAGAAATTGAAGGTGAAA
AAGGCCATCGAGAAAGGCAACATGGACGGCGCCAGAATCTACGCCGAGAA
CTCCATCCGCAAGCGCACCGAACAGATGAATTATCTCCGCCTCGCTTCTC
GTCTCGACGCCGTCGTGGCTCGTCTCGACACCCAGGCCAAAATGACCACC
ATTAATAAGTCCATGGCTAACATCGTCAAGTCCCTTGAATCCTCTCTCGC
TACCGGTACATAAAAATATTTCTTTTTTTTTTGTCAATTTGTTTTCCCAA
GTTCCGTGATTTAGTGAATTATGTTGAATATGAATATTGATGCGATATAC
CATTGCTGGTGCTTTTGTTTTGGTTGGTTTTTCAGGTGATCGTATATTTT
CAAAAGTTGAATTGTTTATTGAGTGATCATGCATTTTTCCTAAAGGAAAA
AATGATTTTATTTTATTTATTTTATTTTTTTGTTAGCTTTGTTAGATATC
AAAAGCATTGTATGGTTGCAGAGAGAAAATTCAAAAGTAAACTTCATCCT
GAATATTATTAGTTGATATAGATGGCTCCAGGCTCTGGCGAAAAATATGC
AATTTGGCTCTGCAATCTTTAAAGATTTGGCCTTAATGATTACTGCACCT
TTGTAGTGTAGAACTTTGCTTTGGGAACACCTGTGAAAAGATTGCTTTCC
NATTCCTGAAGTCATTTTACCCTTCAATGTTCCTTGATAA
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