FC917648

Overview
NameFC917648
Unique NameFC917648
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length919
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11537 contig Ccv1_Contig11537:734..1652. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC917648 vs. ExPASy Swiss-Prot
Match: GBA2_HUMAN (Non-lysosomal glucosylceramidase OS=Homo sapiens GN=GBA2 PE=1 SV=2)

HSP 1 Score: 280.796 bits (717), Expect = 7.527e-75
Identity = 144/312 (46.15%), Postives = 186/312 (59.62%), Query Frame = 2
Query:    2 YNTYDVHFYSSFALVMLFPKLELSIQRDFAAAVMMHDPGTMKIMSDGKWVARKFLGAVPHDIGL--DDPWFEINSYNLFNSSRWKDLNSKFVLQVYRDFVATGDKTFARAVWPSVYIAMAYMEQFDKDGDGMIENEGFPDQTYDAWSANGVSAYCGGLWVXXXXXXXXXXNDVGDHASASYFWVRYQKAKAVYDS-LWNGSYFNYDNSDGSSSTSIQADQLAGQWYARACGL----LPIADEAKVKKALTKIYDFNVLKVKGGMCGAMNGMQPDGRIDMSGLQAREIWPGVTYGLAASMIQEEMVDMAFQTA 916
            YNTYDVHFY+SFAL+ML+PKLELS+Q D A A +  D    + +  G     K    +PHDIG   D+PW  +N+Y + +++ WKDLN KFVLQVYRD+  TGD+ F + +WP     M    +FDKD DG+IEN G+ DQTYD W   G SAYCGGLW+             G       F     + +  Y+  LWNG Y+NYD+S    S S+ +DQ AGQW+ +ACGL      +     V +AL  I++ NV    GG  GA+NGMQP G  D S +Q+ E+W GV YGLAA+MIQE +    FQTA
Sbjct:  534 YNTYDVHFYASFALIMLWPKLELSLQYDMALATLREDLTRRRYLMSGVMAPVKRRNVIPHDIGDPDDEPWLRVNAYLIHDTADWKDLNLKFVLQVYRDYYLTGDQNFLKDMWPVCLAVMESEMKFDKDHDGLIENGGYADQTYDGWVTTGPSAYCGGLWLAAVAVMVQMAALCGAQDIQDKFSSILSRGQEAYERLLWNGRYYNYDSSSRPQSRSVMSDQCAGQWFLKACGLGEGDTEVFPTQHVVRALQTIFELNVQAFAGGAMGAVNGMQPHGVPDKSSVQSDEVWVGVVYGLAATMIQEGLTWEGFQTA 845          
BLAST of FC917648 vs. ExPASy Swiss-Prot
Match: GBA2_RAT (Non-lysosomal glucosylceramidase OS=Rattus norvegicus GN=Gba2 PE=2 SV=2)

HSP 1 Score: 277.715 bits (709), Expect = 6.372e-74
Identity = 148/316 (46.84%), Postives = 188/316 (59.49%), Query Frame = 2
Query:    2 YNTYDVHFYSSFALVMLFPKLELSIQRDFAAAVMMHDPGTMKIMSDGKWVARKFLGAVPHDIGL--DDPWFEINSYNLFNSSRWKDLNSKFVLQVYRDFVATGDKTFARAVWPSVYIAMAYMEQFDKDGDGMIENEGFPDQTYDAWSANGVSAYCGGLW-----VXXXXXXXXXXNDVGDHASASYFWVRYQKAKAVYDSLWNGSYFNYDNSDGSSSTSIQADQLAGQWYARACGL----LPIADEAKVKKALTKIYDFNVLKVKGGMCGAMNGMQPDGRIDMSGLQAREIWPGVTYGLAASMIQEEMVDMAFQTA 916
            YNTYDVHFY+SFALVML+PKLELS+Q D A A    D    + +  G     K    +PHDIG   D+PW  +N+Y + +++ WKDLN KFVLQVYRD+  TGD+ F + +WP     M    +FDKD DG+IEN G+ DQTYD W   G SAYCGGLW     V           DV D  S+    +  +  +A    LWNG Y+NYD+S    S S+ +DQ AGQW+ RACGL      +     V +AL  I++ NV    GG  GA+NGMQP G  D S +Q+ E+W GV YGLAA+MIQE +    F+TA
Sbjct:  525 YNTYDVHFYASFALVMLWPKLELSLQYDMALATFKEDLTRRRYLMSGVVAPVKRRNVIPHDIGDPDDEPWLRVNAYLIHDTADWKDLNLKFVLQVYRDYYLTGDQGFLKDMWPVCLAVMESEMKFDKDQDGLIENGGYADQTYDGWVTTGPSAYCGGLWLAAVAVMVQMAVLCGAQDVQDKFSS----ILCRGREAYERLLWNGRYYNYDSSSQPQSRSVMSDQCAGQWFLRACGLGEGDTEVFPTLHVVRALKTIFELNVQAFAGGAMGAVNGMQPHGVPDRSSVQSDEVWVGVVYGLAATMIQEGLTWEGFRTA 836          
BLAST of FC917648 vs. ExPASy Swiss-Prot
Match: GBA2_MOUSE (Non-lysosomal glucosylceramidase OS=Mus musculus GN=Gba2 PE=2 SV=2)

HSP 1 Score: 276.944 bits (707), Expect = 1.087e-73
Identity = 145/312 (46.47%), Postives = 185/312 (59.29%), Query Frame = 2
Query:    2 YNTYDVHFYSSFALVMLFPKLELSIQRDFAAAVMMHDPGTMKIMSDGKWVARKFLGAVPHDIGL--DDPWFEINSYNLFNSSRWKDLNSKFVLQVYRDFVATGDKTFARAVWPSVYIAMAYMEQFDKDGDGMIENEGFPDQTYDAWSANGVSAYCGGLWVXXXXXXXXXXNDVGDHASASYFWVRYQKAKAVYDS-LWNGSYFNYDNSDGSSSTSIQADQLAGQWYARACGL----LPIADEAKVKKALTKIYDFNVLKVKGGMCGAMNGMQPDGRIDMSGLQAREIWPGVTYGLAASMIQEEMVDMAFQTA 916
            YNTYDVHFY+SFALVML+PKLELS+Q D A A +  D    + +  G     K    +PHDIG   D+PW  +N+Y + +++ WKDLN KFVLQ+YRD+  TGD+ F   +WP     M    +FDKD DG+IEN G+ DQTYDAW   G SAYCGGLW+             G       F     + +  Y+  LWNG Y+NYD+S    S SI +DQ AGQW+ RACGL      +     V +AL  I++ NV    GG  GA+NGM P G  D S +Q+ E+W GV YGLAA+MIQE +    F+TA
Sbjct:  525 YNTYDVHFYASFALVMLWPKLELSLQYDMALATLKEDLTRRRYLMSGVVAPVKRRNVIPHDIGDPDDEPWLRVNAYLIHDTADWKDLNLKFVLQIYRDYYLTGDQGFLEDMWPVCLAVMESEMKFDKDQDGLIENGGYADQTYDAWVTTGPSAYCGGLWLAAVAVMVQMAVLCGAQDVQERFASILCRGREAYERLLWNGRYYNYDSSSHPQSRSIMSDQCAGQWFLRACGLGEGDTEVFPTLHVVRALQTIFELNVQAFAGGAMGAVNGMHPHGVPDRSSVQSDEVWVGVVYGLAATMIQEGLTWEGFRTA 836          
BLAST of FC917648 vs. ExPASy Swiss-Prot
Match: C3390_DROME (Non-lysosomal glucosylceramidase OS=Drosophila melanogaster GN=CG33090 PE=1 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 3.092e-36
Identity = 85/210 (40.48%), Postives = 114/210 (54.29%), Query Frame = 2
Query:  314 FARAVWPSVYIAMAYMEQFDKDGDGMIENEGFPDQTYDAWSANGVSAYCGGLWVXXXXXXXXXXNDVGDHASASYFWVRYQKAK-AVYDSLWNGSYFNYDNSDGSSSTSIQADQLAGQWYARACGL-LPIADEAKVKKALTKIYDFNVLKVKGGMCGAMNGM-------QPDGRIDMSGLQAREIWPGVTYGLAASMIQEEMVDMAFQTA 916
            + +A++ S    M    ++DKD DG+IEN   PDQTYD+W  +G SAYC GLW+            +        +    +K K ++ + LWNGSY+ +D S     T I ADQL G WY ++CG    I  +  V+ AL +IYD NV+    G  GA NG           G +D S +QA E+WPGV Y LAA+MIQE M + AFQTA
Sbjct:  687 YLKAMYASCKAIMERTIEYDKDNDGLIENTKMPDQTYDSWVMDGPSAYCSGLWLAALQAMSAMATILDQPNDCLRYQDILEKGKRSLEEKLWNGSYYRFDLSHSHRDT-IMADQLCGHWYLKSCGFDYEIYPKENVRTALKRIYDNNVMGFHEGNIGAANGFIANASEPTKPGHVDNSNIQAEEVWPGVVYALAATMIQEGMFEEAFQTA 895          

HSP 2 Score: 104.76 bits (260), Expect = 7.393e-22
Identity = 54/124 (43.55%), Postives = 80/124 (64.52%), Query Frame = 2
Query:    2 YNTYDVHFYSSFALVMLFPKLELSIQRDFAAAVMMHDPGTMKIMSDGKWVARKFLGAVPHDIGLDD--PWFEINSYNLFNSSRWKDLNSKFVLQVYRDFVATGDKTFARAVWPSVYIAMAYMEQ 367
            YNTYDVHFY+S AL  L+P L++S+Q DF  A+      T K++ DGK + RK    VPHD+G  D  P+  IN YN+ + + WKDLN+KFVLQVYRD+    +   A++   S + ++ ++++
Sbjct:  518 YNTYDVHFYASPALAHLWPNLQVSLQYDFKDAIAAELNDTRKMLYDGKVMPRKVKNCVPHDLGDPDEEPFTLINCYNIHDVNDWKDLNTKFVLQVYRDYYVLNELAQAQSDNASKFSSIEFIDK 641          
The following BLAST results are available for this feature:
BLAST of FC917648 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
GBA2_HUMAN7.527e-7546.15Non-lysosomal glucosylceramidase OS=Homo sapiens G... [more]
GBA2_RAT6.372e-7446.84Non-lysosomal glucosylceramidase OS=Rattus norvegi... [more]
GBA2_MOUSE1.087e-7346.47Non-lysosomal glucosylceramidase OS=Mus musculus G... [more]
C3390_DROME3.092e-3640.48Non-lysosomal glucosylceramidase OS=Drosophila mel... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA79DD06RM1 IVIA1 Citrus clementina cDNA clone IC0AAA79DD06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC917648 ID=FC917648; Name=FC917648; organism=Citrus clementina; type=EST; length=919bp
GTATAATACATACGATGTCCATTTCTATTCATCTTTTGCACTGGTCATGC
TATTCCCCAAACTAGAACTTAGCATTCAGAGAGACTTTGCAGCAGCAGTA
ATGATGCATGATCCTGGTACAATGAAAATTATGAGTGATGGAAAGTGGGT
TGCTCGAAAATTTCTCGGTGCTGTTCCCCATGATATTGGGCTTGATGACC
CATGGTTTGAAATAAATAGTTATAACCTGTTCAATTCATCTCGGTGGAAA
GACTTGAATTCTAAATTTGTTCTCCAAGTTTACAGGGATTTTGTAGCCAC
TGGTGATAAAACTTTTGCAAGGGCTGTTTGGCCCTCGGTTTATATTGCTA
TGGCTTATATGGAACAGTTTGATAAGGATGGGGATGGAATGATTGAGAAT
GAAGGGTTTCCTGATCAGACTTATGATGCATGGTCAGCTAACGGGGTCAG
TGCTTATTGCGGTGGGCTGTGGGTGGCTGCCCTTCAGGCTGCCTCAGCCT
TGGCAAATGACGTTGGTGACCATGCATCTGCCAGTTACTTCTGGGTTAGA
TATCAGAAAGCAAAAGCTGTATATGACAGTCTATGGAATGGTTCCTACTT
TAATTATGACAACAGTGATGGTAGTTCAAGCACATCCATTCAGGCCGATC
AATTGGCTGGGCAATGGTATGCAAGAGCATGCGGTCTTTTGCCAATTGCT
GATGAAGCTAAAGTGAAGAAAGCACTTACGAAAATTTACGACTTCAATGT
CTTAAAGGTGAAAGGAGGAATGTGTGGAGCAATGAACGGTATGCAACCTG
ATGGAAGAATTGATATGTCTGGCTTGCAGGCAAGAGAAATATGGCCTGGA
GTTACATACGGCCTTGCTGCTTCTATGATTCAAGAGGAGATGGTGGATAT
GGCATTTCAGACGGCTGCT
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