FC917652

Overview
NameFC917652
Unique NameFC917652
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length915
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11324 contig Ccv1_Contig11324:132..1047. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC917652 vs. ExPASy Swiss-Prot
Match: PGSA_PSEFL (CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase OS=Pseudomonas fluorescens GN=pgsA PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.712e-24
Identity = 59/119 (49.58%), Postives = 77/119 (64.71%), Query Frame = 3
Query:  462 LTLPTILTLGRVAAVPLLICTFYVDSWWGRTTTTSIFIAAAVTDWLDGYIARKMRLGSTFGAFLDPVADKLMVAATLVLLCTKPLELPVFGQVPWLLTVPAIAIIGREITMSAVREWAA 818
            + +P ++T+ RV  +P+ I  FY+   W     +S+F  AA TDWLDGY+AR++   + FGAFLDPVADKLMVA  LVLL  +   L       W LT+PA  IIGREI +SA+REW A
Sbjct:    1 MNIPNLITVLRVLLIPIFILLFYLPYNWSYMAASSVFAFAAATDWLDGYLARRLEQSTPFGAFLDPVADKLMVAVALVLLVQEHGNL-------W-LTLPAAVIIGREIVVSALREWMA 111          
BLAST of FC917652 vs. ExPASy Swiss-Prot
Match: PGSA_ERWCT (CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase OS=Erwinia carotovora subsp. atroseptica GN=pgsA PE=3 SV=3)

HSP 1 Score: 112.079 bits (279), Expect = 4.626e-24
Identity = 61/136 (44.85%), Postives = 83/136 (61.03%), Query Frame = 3
Query:  468 LPTILTLGRVAAVPLLICTFYVDSWWGRTTTTSIFIAAAVTDWLDGYIARKMRLGSTFGAFLDPVADKLMVAATLVLLCTKPLELPVFGQVPWLLTVPAIAIIGREITMSAVREWAASQNTKLLEAVAVNNLGKWK 875
            +PT+LTL RVA +P  +  FY+   W       IF+ AAVTDW DG++AR+ +  + FGAFLDPVADK+MVA  LVL+              W +T+PA  +I REI +SA+REW A    +   +VAV+ +GK K
Sbjct:    5 IPTLLTLFRVALIPFFVLAFYLPFVWAPLLCALIFVFAAVTDWFDGFLARRWKQTTRFGAFLDPVADKVMVAVALVLVAEY--------YHSWWITLPAATMIAREIIISALREWMAEIGKR--SSVAVSWIGKVK 130          
BLAST of FC917652 vs. ExPASy Swiss-Prot
Match: PGSA_HAEIN (CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase OS=Haemophilus influenzae GN=pgsA PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 6.042e-24
Identity = 63/136 (46.32%), Postives = 82/136 (60.29%), Query Frame = 3
Query:  468 LPTILTLGRVAAVPLLICTFYVDSWWGRTTTTSIFIAAAVTDWLDGYIARKMRLGSTFGAFLDPVADKLMVAATLVLLCTKPLELPVFGQVPWLLTVPAIAIIGREITMSAVREWAASQNTKLLEAVAVNNLGKWK 875
            +P  LT+ RV  +P  +  FY+        TT IF  A VTDWLDGY+ARK +  + FGAFLDPVADK+MV A LVL+        V  Q  + +T+PAI +I REI +SA+REW A    +    +AV+  GKWK
Sbjct:    5 IPIFLTIFRVILIPFFVIAFYLPIESSPFITTLIFFIAGVTDWLDGYLARKWKQTTRFGAFLDPVADKVMVVAALVLI--------VEHQHTFWITIPAIIMISREIIISALREWMAELGER--SKIAVSWWGKWK 130          
BLAST of FC917652 vs. ExPASy Swiss-Prot
Match: PGSA_PHOLL (CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase OS=Photorhabdus luminescens subsp. laumondii GN=pgsA PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 7.891e-24
Identity = 61/138 (44.20%), Postives = 82/138 (59.42%), Query Frame = 3
Query:  462 LTLPTILTLGRVAAVPLLICTFYVDSWWGRTTTTSIFIAAAVTDWLDGYIARKMRLGSTFGAFLDPVADKLMVAATLVLLCTKPLELPVFGQVPWLLTVPAIAIIGREITMSAVREWAASQNTKLLEAVAVNNLGKWK 875
            L +PT LTL R+A +P  +  FY+   W       IFI AA TDW DG++AR  +  + FGAFLDPVADK+MVAA LVL+              W +T+PA  +I REI +S++REW A    +   +VAV+ +GK K
Sbjct:    3 LNIPTWLTLFRIALIPFFVLAFYLPFTWAPMVCAIIFIVAAATDWFDGFLARLWKQTTRFGAFLDPVADKIMVAAALVLVSEH--------YHTWWITLPAATMIAREIIISSLREWMAELGKR--SSVAVSWMGKVK 130          
BLAST of FC917652 vs. ExPASy Swiss-Prot
Match: PGSA_SODGM (CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase OS=Sodalis glossinidius (strain morsitans) GN=pgsA PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.296e-23
Identity = 61/138 (44.20%), Postives = 82/138 (59.42%), Query Frame = 3
Query:  462 LTLPTILTLGRVAAVPLLICTFYVDSWWGRTTTTSIFIAAAVTDWLDGYIARKMRLGSTFGAFLDPVADKLMVAATLVLLCTKPLELPVFGQVPWLLTVPAIAIIGREITMSAVREWAASQNTKLLEAVAVNNLGKWK 875
            L +PT LTL RV  +P  +  FY+   W       IF+ AAVTDW DG++AR+ +  + FGAFLDPVADK+MVA  LVL+              W +T+PA  +I REI +SA+REW A    +   +VAV+ +GK K
Sbjct:    3 LNIPTWLTLFRVVMIPFFVLAFYLPFKWAPLCCALIFVLAAVTDWFDGFLARRWKQTTRFGAFLDPVADKVMVAMALVLVAEH--------FHSWWITLPAATMIAREIIISALREWMAEIGKR--SSVAVSWIGKVK 130          
BLAST of FC917652 vs. ExPASy Swiss-Prot
Match: PGSA_SALCH (CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase OS=Salmonella choleraesuis GN=pgsA PE=3 SV=3)

HSP 1 Score: 108.997 bits (271), Expect = 3.916e-23
Identity = 58/136 (42.65%), Postives = 82/136 (60.29%), Query Frame = 3
Query:  468 LPTILTLGRVAAVPLLICTFYVDSWWGRTTTTSIFIAAAVTDWLDGYIARKMRLGSTFGAFLDPVADKLMVAATLVLLCTKPLELPVFGQVPWLLTVPAIAIIGREITMSAVREWAASQNTKLLEAVAVNNLGKWK 875
            +PT+LTL RV  +P L+  FY+   W    +  IF  AA+TDW DG++AR+    + FGAFLDPVADK++VA  +VL+              W +T+PA  +I REI +SA+REW A    +   +VAV+ +GK K
Sbjct:    5 IPTLLTLFRVILIPFLVVVFYLPFAWAPMVSALIFCIAAITDWFDGFLARRWNQSTRFGAFLDPVADKVLVAIAMVLVTEH--------YHSWWVTLPAATMIAREIIISALREWMAELGKR--SSVAVSWIGKVK 130          
BLAST of FC917652 vs. ExPASy Swiss-Prot
Match: PGSA_YERPS (CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase OS=Yersinia pseudotuberculosis GN=pgsA PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 8.724e-23
Identity = 59/138 (42.75%), Postives = 81/138 (58.70%), Query Frame = 3
Query:  462 LTLPTILTLGRVAAVPLLICTFYVDSWWGRTTTTSIFIAAAVTDWLDGYIARKMRLGSTFGAFLDPVADKLMVAATLVLLCTKPLELPVFGQVPWLLTVPAIAIIGREITMSAVREWAASQNTKLLEAVAVNNLGKWK 875
            L +PT LTL RV  +P  +  FY+   W       IF+ AA TDW DG++AR+ +  + FGAFLDPVADK+MVA  LVL+              W +T+PA  +I REI +S++REW A    +   +VAV+ +GK K
Sbjct:    3 LNIPTWLTLFRVVLIPFFVLAFYLPFVWAPMVCAIIFVFAAATDWFDGFLARRWKQTTRFGAFLDPVADKVMVAVALVLVAEH--------YHSWWITLPAATMIAREIIISSLREWMAEIGKR--SSVAVSWVGKVK 130          
BLAST of FC917652 vs. ExPASy Swiss-Prot
Match: PGSA_YERPP (CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase OS=Yersinia pestis (strain Pestoides F) GN=pgsA PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 8.724e-23
Identity = 59/138 (42.75%), Postives = 81/138 (58.70%), Query Frame = 3
Query:  462 LTLPTILTLGRVAAVPLLICTFYVDSWWGRTTTTSIFIAAAVTDWLDGYIARKMRLGSTFGAFLDPVADKLMVAATLVLLCTKPLELPVFGQVPWLLTVPAIAIIGREITMSAVREWAASQNTKLLEAVAVNNLGKWK 875
            L +PT LTL RV  +P  +  FY+   W       IF+ AA TDW DG++AR+ +  + FGAFLDPVADK+MVA  LVL+              W +T+PA  +I REI +S++REW A    +   +VAV+ +GK K
Sbjct:    3 LNIPTWLTLFRVVLIPFFVLAFYLPFVWAPMVCAIIFVFAAATDWFDGFLARRWKQTTRFGAFLDPVADKVMVAVALVLVAEH--------YHSWWITLPAATMIAREIIISSLREWMAEIGKR--SSVAVSWVGKVK 130          
BLAST of FC917652 vs. ExPASy Swiss-Prot
Match: PGSA_YERPN (CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=pgsA PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 8.724e-23
Identity = 59/138 (42.75%), Postives = 81/138 (58.70%), Query Frame = 3
Query:  462 LTLPTILTLGRVAAVPLLICTFYVDSWWGRTTTTSIFIAAAVTDWLDGYIARKMRLGSTFGAFLDPVADKLMVAATLVLLCTKPLELPVFGQVPWLLTVPAIAIIGREITMSAVREWAASQNTKLLEAVAVNNLGKWK 875
            L +PT LTL RV  +P  +  FY+   W       IF+ AA TDW DG++AR+ +  + FGAFLDPVADK+MVA  LVL+              W +T+PA  +I REI +S++REW A    +   +VAV+ +GK K
Sbjct:    3 LNIPTWLTLFRVVLIPFFVLAFYLPFVWAPMVCAIIFVFAAATDWFDGFLARRWKQTTRFGAFLDPVADKVMVAVALVLVAEH--------YHSWWITLPAATMIAREIIISSLREWMAEIGKR--SSVAVSWVGKVK 130          
BLAST of FC917652 vs. ExPASy Swiss-Prot
Match: PGSA_YERPE (CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase OS=Yersinia pestis GN=pgsA PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 8.724e-23
Identity = 59/138 (42.75%), Postives = 81/138 (58.70%), Query Frame = 3
Query:  462 LTLPTILTLGRVAAVPLLICTFYVDSWWGRTTTTSIFIAAAVTDWLDGYIARKMRLGSTFGAFLDPVADKLMVAATLVLLCTKPLELPVFGQVPWLLTVPAIAIIGREITMSAVREWAASQNTKLLEAVAVNNLGKWK 875
            L +PT LTL RV  +P  +  FY+   W       IF+ AA TDW DG++AR+ +  + FGAFLDPVADK+MVA  LVL+              W +T+PA  +I REI +S++REW A    +   +VAV+ +GK K
Sbjct:    3 LNIPTWLTLFRVVLIPFFVLAFYLPFVWAPMVCAIIFVFAAATDWFDGFLARRWKQTTRFGAFLDPVADKVMVAVALVLVAEH--------YHSWWITLPAATMIAREIIISSLREWMAEIGKR--SSVAVSWVGKVK 130          
The following BLAST results are available for this feature:
BLAST of FC917652 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
PGSA_PSEFL2.712e-2449.58CDP-diacylglycerol--glycerol-3-phosphate 3-phospha... [more]
PGSA_ERWCT4.626e-2444.85CDP-diacylglycerol--glycerol-3-phosphate 3-phospha... [more]
PGSA_HAEIN6.042e-2446.32CDP-diacylglycerol--glycerol-3-phosphate 3-phospha... [more]
PGSA_PHOLL7.891e-2444.20CDP-diacylglycerol--glycerol-3-phosphate 3-phospha... [more]
PGSA_SODGM2.296e-2344.20CDP-diacylglycerol--glycerol-3-phosphate 3-phospha... [more]
PGSA_SALCH3.916e-2342.65CDP-diacylglycerol--glycerol-3-phosphate 3-phospha... [more]
PGSA_YERPS8.724e-2342.75CDP-diacylglycerol--glycerol-3-phosphate 3-phospha... [more]
PGSA_YERPP8.724e-2342.75CDP-diacylglycerol--glycerol-3-phosphate 3-phospha... [more]
PGSA_YERPN8.724e-2342.75CDP-diacylglycerol--glycerol-3-phosphate 3-phospha... [more]
PGSA_YERPE8.724e-2342.75CDP-diacylglycerol--glycerol-3-phosphate 3-phospha... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA55AA04RM1 IVIA1 Citrus clementina cDNA clone IC0AAA55AA04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC917652 ID=FC917652; Name=FC917652; organism=Citrus clementina; type=EST; length=915bp
TAACAATGGCAGCTTCGCTCTGCGCTACCCCATACAAACAACTCGTTTTT
CGCCACATCACCACCCGTAAAATATCTTCTCCAAAACTCTACCCCTCTCC
CTTTACCTCTCTCTCCGGGTGCAGGATACCCCCGTGCGCACTCCCCGTCC
CCTCCCCCTCCCCCTCCGCGCACGTTAGCCTGCAACCCCATAACAGCCTT
AGCCTAAGCCTTCCCTTCTCTGGCTTCCGCTACCGTAGCCCCAAACTATA
TATCTCTTCTCGCACCGGTGACACCACCACTCGATCCTCGACGAATAAAG
CCGAAGTTACCGGGTCGGATCCGGAATCTCCTTCGGATCCCGGGTCGGGT
CTCGTCGCTGACATGGATCATCAGGACAATGTCAAGGCCGTTAATGGCGG
TTGGTATTGCGATCAAACGCCGTCACCATCAATTCAGCAACACCAACCGT
CTAATAAGATTCTCACTTTGCCTACAATCTTAACGCTCGGCCGCGTAGCT
GCCGTTCCGCTTCTCATTTGCACTTTTTACGTGGATAGTTGGTGGGGGAG
GACAACGACTACAAGTATTTTTATTGCTGCAGCAGTCACAGATTGGCTCG
ATGGCTACATTGCTCGAAAGATGAGATTAGGCTCTACCTTTGGTGCATTT
TTGGATCCAGTAGCCGATAAGCTTATGGTTGCTGCTACATTGGTACTACT
GTGTACGAAACCTTTGGAATTGCCGGTGTTTGGGCAAGTGCCTTGGTTAC
TGACTGTACCTGCAATTGCAATTATTGGTAGAGAGATAACAATGTCTGCA
GTCAGAGAATGGGCTGCTTCTCAGAATACTAAGCTTTTAGAGGCTGTCGC
TGTAAATAACCTTGGCAAGTGGAAACTGCAACACAGATGATTGCACTATC
CATCCTTCTCACTAC
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