FC917667

Overview
NameFC917667
Unique NameFC917667
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length850
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14691 contig Ccv1_Contig14691:1247..2096. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC917667 vs. ExPASy Swiss-Prot
Match: EIF3A_TOBAC (Eukaryotic translation initiation factor 3 subunit A OS=Nicotiana tabacum GN=TIF3A1 PE=2 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 2.293e-59
Identity = 138/282 (48.94%), Postives = 162/282 (57.45%), Query Frame = 3
Query:    3 LNKVRALIYPPANKALKLGEMLAGLGEIVDKEHKRLLARKSIIEKRKXXXXXXXXXXXXXXXXXXLKQQKITEEAEQKRLAAEFEHRKNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVTKQTLMERALTEQLRERQEMEKKLQKLAKTMDYLERAKREEAAPLIDAAFQQRLEEEKVLHEREQQLEVELSRQRHDGDLREKYRLSRMLDNKNTFQXXXXXXXXXXXXXXXXXXXXXISLIIXXXXXXXXXXXXXIFYVRTEEEKIKRLRE 848
            L+K R +IYPPA KA KLGE L+ L EIV+KEHKRLLARKSIIEKRK                     QK+TEEAEQKR+AAE+E R+N                                        +TK+ +ME AL EQLRERQEMEKKL K AK+MD+LERAKREEAAPLI++AF+QRL EE  LHEREQQ E+ELSRQRH GDL EK RL+RML+NK   Q                     IS II             IF++R+EEE+ KRL+E
Sbjct:  529 LSKARTMIYPPAKKAAKLGEALSNLAEIVEKEHKRLLARKSIIEKRKEEQERLLLEMERVEETKRRDVQKMTEEAEQKRIAAEYEQRRNQRILKEIEDRELEEAQALLHEAEKRSKRKKKPVLEGEK--MTKKVIMELALNEQLRERQEMEKKLLKFAKSMDHLERAKREEAAPLIESAFKQRLAEEAALHEREQQQEIELSRQRHAGDLEEKRRLARMLENKRILQEKVVSSREAEFTRMKRERQERISQIIQSRKQEREARRKMIFFLRSEEERQKRLQE 808          
BLAST of FC917667 vs. ExPASy Swiss-Prot
Match: EIF3A_ARATH (Eukaryotic translation initiation factor 3 subunit A OS=Arabidopsis thaliana GN=TIF3A1 PE=1 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 7.375e-58
Identity = 135/282 (47.87%), Postives = 164/282 (58.16%), Query Frame = 3
Query:    3 LNKVRALIYPPANKALKLGEMLAGLGEIVDKEHKRLLARKSIIEKRKXXXXXXXXXXXXXXXXXXLKQQKITEEAEQKRLAAEFEHRKNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVTKQTLMERALTEQLRERQEMEKKLQKLAKTMDYLERAKREEAAPLIDAAFQQRLEEEKVLHEREQQLEVELSRQRHDGDLREKYRLSRMLDNKNTFQXXXXXXXXXXXXXXXXXXXXXISLIIXXXXXXXXXXXXXIFYVRTEEEKIKRLRE 848
            L+KVRA++YP  +KA KL  ++  L + V+KEHKRLLARKSIIEKRK                  LK QK+TEEAEQKRLAAE   R+                                         VTKQ++ ERALTEQL+ERQEMEKKLQKLAKTMDYLERAKREEAAPLI+AA+Q+RL EE+  +EREQQ EVELS++RH+ DL+EK RLSRML NK  FQ                     IS II             I+Y++ EEE+I++L+E
Sbjct:  529 LSKVRAMLYPVPSKASKLAGVIPNLADTVEKEHKRLLARKSIIEKRKEDQERQQLEMEREEEQKRLKLQKLTEEAEQKRLAAELAERRKQRILREIEEKELEEAQALLEETEKRMKKGKKKPLLDGEK-VTKQSVKERALTEQLKERQEMEKKLQKLAKTMDYLERAKREEAAPLIEAAYQRRLVEEREFYEREQQREVELSKERHESDLKEKNRLSRMLGNKEIFQAQVISRRQAEFDRIRTEREERISKIIREKKQERDIKRKQIYYLKIEEERIRKLQE 809          
BLAST of FC917667 vs. ExPASy Swiss-Prot
Match: EIF3A_MAIZE (Eukaryotic translation initiation factor 3 subunit A OS=Zea mays GN=TIF3A1 PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.907e-46
Identity = 117/282 (41.49%), Postives = 143/282 (50.71%), Query Frame = 3
Query:    3 LNKVRALIYPPANKALKLGEMLAGLGEIVDKEHKRLLARKSIIEKRKXXXXXXXXXXXXXXXXXXLKQQKITEEAEQKRLAAEFEHRKNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVTKQTLMERALTEQLRERQEMEKKLQKLAKTMDYLERAKREEAAPLIDAAFQQRLEEEKVLHEREQQLEVELSRQRHDGDLREKYRLSRMLDNKNTFQXXXXXXXXXXXXXXXXXXXXXISLIIXXXXXXXXXXXXXIFYVRTEEEKIKRLRE 848
            LNK R  I PP  K  KLGE L  L  IV+ EHKRLLARKSIIEKRK                  +  QK T + E+ RL  E   R+                                         +TK+  ME A  EQL+ER EMEKKLQK AKTMDYLERAKR+E APLI+ AFQ+RLEEEK+LHE+EQ  E+ELS+Q H  DL+EK RLSRML++KN  Q                     ++ +I             +FY+  EE++I+ LRE
Sbjct:  527 LNKARIHICPPVKKPSKLGESLISLAAIVENEHKRLLARKSIIEKRKEELERQILEKEKEEEKKRMSSQKKTVDEERVRLLNEQRQREQDRIRREIEEKNKAEAKKMLEDLNKAGKKHVVVEGE-----LTKEAYMELARNEQLKERHEMEKKLQKFAKTMDYLERAKRQEEAPLIEQAFQKRLEEEKILHEQEQLREIELSKQHHASDLQEKNRLSRMLEHKNALQERIIQERAAEFGRLKKERDERMNRLISSRKHERETVRKLMFYLNLEEQRIEMLRE 803          
The following BLAST results are available for this feature:
BLAST of FC917667 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
EIF3A_TOBAC2.293e-5948.94Eukaryotic translation initiation factor 3 subunit... [more]
EIF3A_ARATH7.375e-5847.87Eukaryotic translation initiation factor 3 subunit... [more]
EIF3A_MAIZE2.907e-4641.49Eukaryotic translation initiation factor 3 subunit... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA33CD10RM1 IVIA1 Citrus clementina cDNA clone IC0AAA33CD10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC917667 ID=FC917667; Name=FC917667; organism=Citrus clementina; type=EST; length=850bp
CTTTAAATAAAGTGCGGGCCTTGATATATCCTCCTGCAAATAAGGCATTA
AAGCTAGGTGAAATGTTGGCTGGTTTAGGGGAGATTGTAGATAAGGAACA
TAAGAGGCTTCTTGCGCGGAAATCAATCATTGAGAAAAGGAAGGAAGAGC
ATGAACGCCAACTTATTGAAATGGAACGTGAAGAAGAGTCTAGGAGGCTA
AAGCAACAGAAGATAACAGAGGAGGCTGAGCAGAAGAGGCTTGCTGCTGA
ATTTGAGCATAGGAAAAATCAAAGGATCCTCAGAGAAATAGAGGAGCGTG
AACTTGAAGAAGCGCAAGCACTGCTTGAAGAAGCTGAGAAGCGCAATAAA
AAGAAGGGAGGCAAAAAGCCAATCTTAGAGGGGGAAAAAGTGACAAAACA
AACTTTGATGGAGCGAGCCCTGACCGAGCAGCTGAGGGAGAGGCAAGAGA
TGGAGAAAAAGTTACAAAAACTAGCCAAGACAATGGATTATTTGGAAAGA
GCAAAAAGAGAAGAGGCTGCCCCCTTGATTGATGCTGCTTTCCAACAACG
GTTGGAGGAGGAGAAGGTGCTTCATGAACGTGAACAACAGCTAGAGGTTG
AGTTGAGCCGGCAGCGACATGATGGAGACCTGAGGGAAAAGTATAGGCTT
TCAAGGATGTTGGACAACAAGAACACATTCCAGGAAAGAGTGCTGAACCG
TCGAAGAGTTGAGGTCGACAGGCGCAAAGTGGAGAGGGAGGAAAGAATCA
GCCTAATTATTAAGGCCCGAAAACAGGAGAGGGAGGCTAAGAGAAAGAAG
ATATTCTACGTTAGGACCGAAGAAGAGAAAATAAAAAGGCTGCGTGAGGA
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