FC917675

Overview
NameFC917675
Unique NameFC917675
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length903
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11373 contig Ccv1_Contig11373:95..996. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC917675 vs. ExPASy Swiss-Prot
Match: NHX1_ARATH (Sodium/hydrogen exchanger 1 OS=Arabidopsis thaliana GN=NHX1 PE=1 SV=2)

HSP 1 Score: 294.278 bits (752), Expect = 5.000e-95
Identity = 145/177 (81.92%), Postives = 163/177 (92.09%), Query Frame = 2
Query:  191 ISSVVRKLQMVNTSDHNSVVSINIFVALLCASIVIGHLLEESRWMNESITALLIGVCAGVIILLTTGGKSSHLFVFSEDLFFIYVLPPIIFNAGFQVKKKQFFRNFITIMLFGAIGTLVSCTIISLGVIQFFKKLDIGTLDIGDYLAIGAIFAATDSVCTLQVLNQDDTPLLYSLVF 721
            + S+V KL  ++TSDH SVV++N+FVALLCA IV+GHLLEE+RWMNESITALLIG+  GV ILL + GKSSHL VFSEDLFFIY+LPPIIFNAGFQVKKKQFFRNF+TIMLFGA+GT++SCTIISLGV QFFKKLDIGT D+GDYLAIGAIFAATDSVCTLQVLNQD+TPLLYSLVF
Sbjct:    2 LDSLVSKLPSLSTSDHASVVALNLFVALLCACIVLGHLLEENRWMNESITALLIGLGTGVTILLISKGKSSHLLVFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFVTIMLFGAVGTIISCTIISLGVTQFFKKLDIGTFDLGDYLAIGAIFAATDSVCTLQVLNQDETPLLYSLVF 178          

HSP 2 Score: 75.8702 bits (185), Expect = 5.000e-95
Identity = 36/48 (75.00%), Postives = 41/48 (85.42%), Query Frame = 3
Query:  723 GEGVVNDATSVVLXHAIQSFDLTHINTRSAFQFIGNFLYLFFTSTLLG 866
            GEGVVNDATSVV+ +AIQSFDLTH+N  +AF  +GNFLYLF  STLLG
Sbjct:  179 GEGVVNDATSVVVFNAIQSFDLTHLNHEAAFHLLGNFLYLFLLSTLLG 226          
BLAST of FC917675 vs. ExPASy Swiss-Prot
Match: NHX2_ARATH (Sodium/hydrogen exchanger 2 OS=Arabidopsis thaliana GN=NHX2 PE=1 SV=2)

HSP 1 Score: 291.967 bits (746), Expect = 1.448e-94
Identity = 145/176 (82.39%), Postives = 162/176 (92.05%), Query Frame = 2
Query:  194 SSVVRKLQMVNTSDHNSVVSINIFVALLCASIVIGHLLEESRWMNESITALLIGVCAGVIILLTTGGKSSHLFVFSEDLFFIYVLPPIIFNAGFQVKKKQFFRNFITIMLFGAIGTLVSCTIISLGVIQFFKKLDIGTLDIGDYLAIGAIFAATDSVCTLQVLNQDDTPLLYSLVF 721
            +S+  K+  V+TSDH SVVS+N+FVALLCA IVIGHLLEE+RWMNESITALLIG+  GV+ILL + GK+SHL VFSEDLFFIY+LPPIIFNAGFQVKKKQFFRNF+TIM FGAIGT+VSCTIISLG IQFFKKLDIGT D+GD+LAIGAIFAATDSVCTLQVLNQD+TPLLYSLVF
Sbjct:    5 ASLTSKMLSVSTSDHASVVSLNLFVALLCACIVIGHLLEENRWMNESITALLIGLGTGVVILLISRGKNSHLLVFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFVTIMAFGAIGTVVSCTIISLGAIQFFKKLDIGTFDLGDFLAIGAIFAATDSVCTLQVLNQDETPLLYSLVF 180          

HSP 2 Score: 76.6406 bits (187), Expect = 1.448e-94
Identity = 37/48 (77.08%), Postives = 41/48 (85.42%), Query Frame = 3
Query:  723 GEGVVNDATSVVLXHAIQSFDLTHINTRSAFQFIGNFLYLFFTSTLLG 866
            GEGVVNDATSVVL +AIQSFDLTH+N  +AFQF+GNF YLF  ST LG
Sbjct:  181 GEGVVNDATSVVLFNAIQSFDLTHLNHEAAFQFLGNFFYLFLLSTGLG 228          
BLAST of FC917675 vs. ExPASy Swiss-Prot
Match: NHX3_ARATH (Sodium/hydrogen exchanger 3 OS=Arabidopsis thaliana GN=NHX3 PE=2 SV=2)

HSP 1 Score: 269.24 bits (687), Expect = 1.910e-85
Identity = 132/177 (74.58%), Postives = 155/177 (87.57%), Query Frame = 2
Query:  191 ISSVVRKLQMVNTSDHNSVVSINIFVALLCASIVIGHLLEESRWMNESITALLIGVCAGVIILLTTGGKSSHLFVFSEDLFFIYVLPPIIFNAGFQVKKKQFFRNFITIMLFGAIGTLVSCTIISLGVIQFFKKLDIGTLDIGDYLAIGAIFAATDSVCTLQVLNQDDTPLLYSLVF 721
            +S+++ K + +  SDH SVVS+N+FVALLCA IV+GHLLEE+RWMNESITAL+IG C G++ILL +GGKSS + VFSEDLFFIY+LPPIIFNAGFQVKKKQFFRNF+TIMLFGAIGTL+S  IIS G    F+K++IG L I DYLAIGAIF+ATDSVCTLQVLNQD+TPLLYSLVF
Sbjct:    5 LSTMLEKTEALFASDHASVVSMNLFVALLCACIVLGHLLEETRWMNESITALIIGSCTGIVILLISGGKSSRILVFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAIGTLISFVIISFGAKHLFEKMNIGDLTIADYLAIGAIFSATDSVCTLQVLNQDETPLLYSLVF 181          

HSP 2 Score: 68.9366 bits (167), Expect = 1.910e-85
Identity = 34/48 (70.83%), Postives = 38/48 (79.17%), Query Frame = 3
Query:  723 GEGVVNDATSVVLXHAIQSFDLTHINTRSAFQFIGNFLYLFFTSTLLG 866
            GEGVVNDATSVVL +AIQ FDLT+IN+  A +F GNF YLF  ST LG
Sbjct:  182 GEGVVNDATSVVLFNAIQRFDLTNINSAIALEFAGNFFYLFILSTALG 229          
BLAST of FC917675 vs. ExPASy Swiss-Prot
Match: NHX4_ARATH (Sodium/hydrogen exchanger 4 OS=Arabidopsis thaliana GN=NHX4 PE=2 SV=2)

HSP 1 Score: 221.09 bits (562), Expect = 2.951e-68
Identity = 104/164 (63.41%), Postives = 131/164 (79.88%), Query Frame = 2
Query:  230 SDHNSVVSINIFVALLCASIVIGHLLEESRWMNESITALLIGVCAGVIILLTTGGKSSHLFVFSEDLFFIYVLPPIIFNAGFQVKKKQFFRNFITIMLFGAIGTLVSCTIISLGVIQFFKKLDIGTLDIGDYLAIGAIFAATDSVCTLQVLNQDDTPLLYSLVF 721
            ++H  V+ I++F+A+LC  +VIGHLLEE+RW+NESITA+L+G  +G +ILL + GKSSH+ VF E+LFFIY+LPPIIFNAGFQVKKK+FF NF+TIM FG IG  +S  IIS G    F KL    L   DYLAIG IF++TD+VCTLQ+L+QD+TPLLYSLVF
Sbjct:   15 AEHPQVIPISVFIAILCLCLVIGHLLEENRWVNESITAILVGAASGTVILLISKGKSSHILVFDEELFFIYLLPPIIFNAGFQVKKKKFFHNFLTIMSFGVIGVFISTVIISFGTWWLFPKLGFKGLSARDYLAIGTIFSSTDTVCTLQILHQDETPLLYSLVF 178          

HSP 2 Score: 59.6918 bits (143), Expect = 2.951e-68
Identity = 30/48 (62.50%), Postives = 34/48 (70.83%), Query Frame = 3
Query:  723 GEGVVNDATSVVLXHAIQSFDLTHINTRSAFQFIGNFLYLFFTSTLLG 866
            GEGVVNDATSVVL +A+Q      +   +A Q  GNFLYLF TSTLLG
Sbjct:  179 GEGVVNDATSVVLFNAVQKIQFESLTGWTALQVFGNFLYLFSTSTLLG 226          
BLAST of FC917675 vs. ExPASy Swiss-Prot
Match: NHE1_DICDI (Sodium/hydrogen exchanger 1 OS=Dictyostelium discoideum GN=nhe1 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.949e-17
Identity = 50/171 (29.24%), Postives = 89/171 (52.05%), Query Frame = 2
Query:  218 MVNTSDHNSVVSINIFVALLCASIVIGHLLEESRWMNESITALLIGVCAGVIILLTTGGKSSHLFVFSEDLFFIYVLPPIIFNAGFQVKKKQFFRNFITIMLFGAIGTLVSCTIISLGV-IQFFKKLDIGTLDIGDYLAIGAIFAATDSVCTL---QVLNQDDTPLLYSLV 718
            + N  + N+++ I + +      IV   +  +  ++ ES+  +  G+  G++         +H+  F  + FF+++LP IIF  G+ + K  FF N   I++F   GT+++  ++  G+ I  +  + I  L + D  A G+I ++TD VCTL   Q LN D  P+LY LV
Sbjct:  112 LANQREANTIIFIIMLILTGSVLIVYFIISLDIPFVPESVAVVTYGIILGIVFRFFYSDIVNHVVSFEPENFFLFILPTIIFETGYSLHKTDFFNNIGPILMFAVFGTIITFLVVGFGIYIVGYFGVSI-ALSLKDSFAFGSIISSTDPVCTLAIFQALNVD--PMLYILV 279          

HSP 2 Score: 25.7942 bits (55), Expect = 4.949e-17
Identity = 15/49 (30.61%), Postives = 24/49 (48.98%), Query Frame = 3
Query:  720 LGEGVVNDATSVVLXHAIQSFDLTHINTRSAFQFIGNFLYLFFTSTLLG 866
            LGE ++NDATS++L   ++       +TR        F  +   S +LG
Sbjct:  280 LGESILNDATSMMLYSVVED-----TSTRDIIISCAMFTVVAIGSVILG 323          
BLAST of FC917675 vs. ExPASy Swiss-Prot
Match: NHX5_ARATH (Sodium/hydrogen exchanger 5 OS=Arabidopsis thaliana GN=NHX5 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 2.037e-16
Identity = 56/163 (34.36%), Postives = 93/163 (57.06%), Query Frame = 2
Query:  248 VSINIFVALLCASIVIGHLLEESR--WMNESITALLIGVCAGVIILLTTGGKSSHL-FVFSEDLFFIYVLPPIIFNAGFQVKKKQFFRNFITIMLFGAIGTLVSCTIISLGVIQFFKKLDI-GTLDIGDYLAIGAIFAATDSVCTLQVLNQDDTPL-LYSLVF 721
            V I + + +L  S V+GH+L   R  ++ E+  +LLIG+  G++  ++    S    F F E+ FF+++LPPIIF +GF ++ K FF NF  I+ F  IGT V+ ++++ G++     + +   L   + L  GA+ +ATD V  L +     T + LY+LVF
Sbjct:   21 VGILLQIMMLVLSFVLGHVLRRHRFHYLPEASGSLLIGLIVGILANISDTETSIRTWFNFHEEFFFLFLLPPIIFQSGFSLQPKPFFSNFGAIVTFAIIGTFVA-SVVTGGLVYLGGSMYLMYKLPFVECLMFGALISATDPVTVLSIFQDVGTDVNLYALVF 182          
BLAST of FC917675 vs. ExPASy Swiss-Prot
Match: SL9A7_MOUSE (Sodium/hydrogen exchanger 7 OS=Mus musculus GN=Slc9a7 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 8.835e-16
Identity = 45/110 (40.91%), Postives = 65/110 (59.09%), Query Frame = 2
Query:  416 FSEDLFFIYVLPPIIFNAGFQVKKKQFFRNFITIMLFGAIGTLVSCTIIS---LGVIQFFKKLDIGTLD----IGDYLAIGAIFAATDSVCTLQVLNQDDTPL-LYSLVF 721
            F  ++FF  +LPPIIF+AG+ +KK+ FFRN  +I+ +  +GT VSC II     GV++  K   +G L       D L  GAI +ATD V  L + N+    + LY+L+F
Sbjct:  178 FDPEVFFNILLPPIIFHAGYSLKKRHFFRNLGSILAYAFLGTAVSCFIIGNLMYGVVKLMK--IVGQLSDKFYYTDCLFFGAIISATDPVTVLAIFNELHADVDLYALLF 285          

HSP 2 Score: 31.9574 bits (71), Expect = 8.835e-16
Identity = 18/53 (33.96%), Postives = 30/53 (56.60%), Query Frame = 3
Query:  723 GEGVVNDATSVVLXHAIQSFDLTHINTR-----SAFQFIGNFLYLFFTSTLLG 866
            GE V+NDA ++VL  +I ++    +NT      + F+ +G FL +F  S  +G
Sbjct:  286 GESVLNDAVAIVLSSSIVAYQPAGLNTHAFDAAAFFKSVGIFLGIFSGSFTMG 338          
BLAST of FC917675 vs. ExPASy Swiss-Prot
Match: SL9A7_HUMAN (Sodium/hydrogen exchanger 7 OS=Homo sapiens GN=SLC9A7 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.148e-15
Identity = 45/110 (40.91%), Postives = 65/110 (59.09%), Query Frame = 2
Query:  416 FSEDLFFIYVLPPIIFNAGFQVKKKQFFRNFITIMLFGAIGTLVSCTIIS---LGVIQFFKKLDIGTLD----IGDYLAIGAIFAATDSVCTLQVLNQDDTPL-LYSLVF 721
            F  ++FF  +LPPIIF+AG+ +KK+ FFRN  +I+ +  +GT VSC II     GV++  K +  G L       D L  GAI +ATD V  L + N+    + LY+L+F
Sbjct:  178 FDPEVFFNILLPPIIFHAGYSLKKRHFFRNLGSILAYAFLGTAVSCFIIGNLMYGVVKLMKIM--GQLSDKFYYTDCLFFGAIISATDPVTVLAIFNELHADVDLYALLF 285          

HSP 2 Score: 31.9574 bits (71), Expect = 1.148e-15
Identity = 18/53 (33.96%), Postives = 30/53 (56.60%), Query Frame = 3
Query:  723 GEGVVNDATSVVLXHAIQSFDLTHINTR-----SAFQFIGNFLYLFFTSTLLG 866
            GE V+NDA ++VL  +I ++    +NT      + F+ +G FL +F  S  +G
Sbjct:  286 GESVLNDAVAIVLSSSIVAYQPAGLNTHAFDAAAFFKSVGIFLGIFSGSFTMG 338          
BLAST of FC917675 vs. ExPASy Swiss-Prot
Match: NHX1_YEAST (Endosomal/prevacuolar sodium/hydrogen exchanger OS=Saccharomyces cerevisiae GN=NHX1 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.252e-15
Identity = 48/170 (28.24%), Postives = 95/170 (55.88%), Query Frame = 2
Query:  227 TSDHNSVVSINIFVALLCASIVIGHLLEESRW--MNESITALLIGVCAGVIILLTTGGKSSHLFVFSEDLFFIYVLPPIIFNAGFQVKKKQFFRNFITIMLFGAIGTLVSCTIISLGVIQFFKKLDIGTLDI--GDYLAIGAIFAATDSVCTLQVLNQDDT-PLLYSLVF 721
            T +  S  ++ I + LL +++   + L + R   ++E++ ++  G+  G+II ++ G        F+   FF  +LPPII N+G+++ +  FF N ++I++F   GT +S  +I + ++  +  L + ++DI   D +++GA  +ATD V  L + N     P LY+++F
Sbjct:   55 TEEMFSSWALFIMLLLLISALWSSYYLTQKRIRAVHETVLSIFYGMVIGLIIRMSPGHYIQDTVTFNSSYFFNVLLPPIILNSGYELNQVNFFNNMLSILIFAIPGTFISAVVIGI-ILYIWTFLGLESIDISFADAMSVGATLSATDPVTILSIFNAYKVDPKLYTIIF 223          
BLAST of FC917675 vs. ExPASy Swiss-Prot
Match: NHX6_ARATH (Sodium/hydrogen exchanger 6 OS=Arabidopsis thaliana GN=NHX6 PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 3.842e-15
Identity = 55/181 (30.39%), Postives = 93/181 (51.38%), Query Frame = 2
Query:  191 ISSVVRKLQMVNTSDHNSVVSINIFVALLCASIVIGHLLEESR--WMNESITALLIGVCAGVIILLTTGGKSSHL-FVFSEDLFFIYVLPPIIFNAGFQVKKKQFFRNFITIMLFGAIGTLVSCTIISLGVIQFFKKLDIGTLDIGDYLAIGAIFAATDSVCTLQVLNQDDTPL-LYSLVF 721
            IS  +   Q        + V I + + +L  S V+GH+L   +  ++ E+  +LLIG+  G +  ++    S    F F ++ FF+++LPPIIF +GF ++ K FF NF  I+ F  +GT V+  +  L V        +  L   + L  G++ +ATD V  L +  +  + + LY+LVF
Sbjct:    7 ISPAIHDPQGQEKQQQAAGVGILLQIMMLVLSFVLGHVLRRHKFYYLPEASASLLIGLIVGGLANISNTETSIRTWFNFHDEFFFLFLLPPIIFQSGFSLQPKPFFSNFGAIVTFSVLGTFVASMVTGLLVYLGGVMFLMYRLPFVECLMFGSLISATDPVTVLSIFQELGSDVNLYALVF 187          
The following BLAST results are available for this feature:
BLAST of FC917675 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
NHX1_ARATH5.000e-9581.92Sodium/hydrogen exchanger 1 OS=Arabidopsis thalian... [more]
NHX2_ARATH1.448e-9482.39Sodium/hydrogen exchanger 2 OS=Arabidopsis thalian... [more]
NHX3_ARATH1.910e-8574.58Sodium/hydrogen exchanger 3 OS=Arabidopsis thalian... [more]
NHX4_ARATH2.951e-6863.41Sodium/hydrogen exchanger 4 OS=Arabidopsis thalian... [more]
NHE1_DICDI4.949e-1729.24Sodium/hydrogen exchanger 1 OS=Dictyostelium disco... [more]
NHX5_ARATH2.037e-1634.36Sodium/hydrogen exchanger 5 OS=Arabidopsis thalian... [more]
SL9A7_MOUSE8.835e-1640.91Sodium/hydrogen exchanger 7 OS=Mus musculus GN=Slc... [more]
SL9A7_HUMAN1.148e-1540.91Sodium/hydrogen exchanger 7 OS=Homo sapiens GN=SLC... [more]
NHX1_YEAST2.252e-1528.24Endosomal/prevacuolar sodium/hydrogen exchanger OS... [more]
NHX6_ARATH3.842e-1530.39Sodium/hydrogen exchanger 6 OS=Arabidopsis thalian... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA21AH10RM1 IVIA1 Citrus clementina cDNA clone IC0AAA21AH10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC917675 ID=FC917675; Name=FC917675; organism=Citrus clementina; type=EST; length=903bp
CGCTGACTCTCTGTTTCTGGGTTTCAATCATTTGGATTTTTTTTTCGGCA
AATGAGAAGCGTTACGGTTTGTGAACTGACTGGCTTGTTTGGAGAAAATC
AGAGTTTTAGAGTTGTGAAGAAGAAGTAAAATTAATCTGTATTGAGCAAT
TGATTGATAAAAGCTGTGGTTGCAAAAAATGGATCAAGCAATAAGTTCTG
TTGTAAGGAAATTGCAAATGGTGAACACGTCTGATCACAACTCGGTGGTT
TCCATAAACATTTTTGTGGCGCTTCTTTGTGCTTCTATTGTGATTGGTCA
CCTTCTTGAAGAAAGCCGGTGGATGAACGAGTCCATTACAGCTCTACTGA
TTGGAGTTTGTGCAGGTGTGATTATTTTGCTGACAACTGGGGGAAAAAGC
TCACATCTGTTTGTCTTCAGTGAAGATCTGTTCTTTATATATGTGTTGCC
CCCCATTATATTTAATGCAGGATTTCAGGTGAAAAAGAAGCAATTTTTCC
GTAACTTCATTACTATCATGCTGTTTGGTGCAATTGGGACATTAGTAAGC
TGTACCATCATATCACTAGGTGTTATTCAGTTCTTTAAGAAATTGGATAT
TGGTACTCTGGATATAGGAGATTATCTAGCAATTGGTGCAATATTTGCTG
CGACAGATTCCGTTTGCACGTTGCAGGTGCTTAATCAGGATGACACACCT
TTGCTCTACAGTCTGGTATTTGGGGGAGGGTGTTGTTAATGATGCTACAT
CTGTGGTTCTTTTNCATGCAATCCAGAGCTTTGACCTCACTCATATAAAT
ACCAGATCAGCATTTCAGTTTATTGGAAACTTCCTTTATCTATTTTTCAC
TAGCACTTTGCTGGGGGGTGATTGGCGGACTGCTTAGTGCTTATGTTATT
AAA
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