FC917684

Overview
NameFC917684
Unique NameFC917684
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length876
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC917684_ssr109 microsatellite FC917684_ssr109:109..120. BLAST: Citrus ESTs to Prunus persica proteins V1
FC917684_ssr416 microsatellite FC917684_ssr416:416..427. BLAST: Citrus ESTs to Prunus persica proteins V1
FC917684_ssr826 microsatellite FC917684_ssr826:826..849. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig11847 contig Ccv1_Contig11847:15..890. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC917684 vs. ExPASy Swiss-Prot
Match: SCR_PEA (Protein SCARECROW OS=Pisum sativum GN=SCR PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 7.847e-26
Identity = 93/267 (34.83%), Postives = 128/267 (47.94%), Query Frame = 2
Query:   65 EGKMVRKRTASEMEVQQQQLYSGSSDYYR-SRLPRRNNPIN-QAPTATPSAIPNYSTMS---------SFNDNVNMSTLTLPPSSLINN---------------------VTSGASGFLXXXXXXXXXXXXNFSCIDNLSXXXXXXXXXXXXXAVCGFSGLPLFPPADHHQRNRNAASIGLIPAAPSCTSANNLASSMEDSSATA-WIDGIIKDLIHNSANVSIPQLIHNVREIIFPCNPNLAALLEYRLRSLNSEP---LLERSRN 757
            E K++RKR ASEME+Q     + ++DY+R SR     + +N   P  T   +   +T +         + N+N N        +S+INN                     VT+  S  L            + S  +                 +CGFSGLPLFP  ++     N  S        +     + + SME++SAT  WIDGI+KDLIH S +VSIPQLI+NVREII+PCNPNLA +LE+RLR L +EP   + ER RN
Sbjct:   48 ERKLLRKRMASEMELQLHN-NNNNNDYHRFSRRTNNTSSLNCSLPATTQKGVTTTTTTTLASSGNNNNNNNNNNNYHYHNNNNNSIINNNNNNVALSRDNVAIQNFPTVTVTTNYSTMLLPSSCSSNLNNSSTSAANYTHYQQPLVEEQNTLPEICGFSGLPLFPSQNNQTNRTNNNSSNNRNNTNTVVDVVSSSPSMEETSATTNWIDGILKDLIHTSNSVSIPQLINNVREIIYPCNPNLALVLEHRLRLL-TEPNTCVPERKRN 312          
BLAST of FC917684 vs. ExPASy Swiss-Prot
Match: SCR_IPONI (Protein SCARECROW OS=Ipomoea nil GN=SCR PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.480e-24
Identity = 98/251 (39.04%), Postives = 124/251 (49.40%), Query Frame = 2
Query:   71 KMVRKRTASEMEVQQQQLYSGSSDYYRSRLPRRNNPI------------------NQAPTATPSAI--PNYSTMSSFNDNVNMSTLTL--PPSSLINNVTSGASGFLXXXXXXXXXXXXNFSCIDNLSXXXXXXXXXXXXXAVCGFSGLPLFPPADHHQRNRNAASIGLIPAAPSCTSANNLASSMEDSS---------ATAWIDGIIKDLIHNSANVSIPQLIHNVREIIFPCNPNLAALLEYRLRSLNS 730
            KMVRKR ASEME+Q   +  G S++   R  RRN P+                  N    +   ++  PN+  ++      N ST+ +  PP+S   +VTS +                + + ++ L               +C FSGLPLFP      R RNAA   L PA P   +A+  A  +  SS         A AWIDGIIKDLIH S +VSIPQLI NVREII PCNPNLAALLEYRLRSL +
Sbjct:   58 KMVRKRAASEMELQ---IGGGISEH--GRFLRRNAPLLGDLRVCGTNFGGGAGGDNGGGNSLGVSVSHPNHVVVN------NYSTMQIAPPPTSTNLSVTSTSDA-------------THLAYMEQLPPNEPQAPLP-----LCVFSGLPLFPAPS---RARNAAGAALQPA-PLPVTASGSAIGVNSSSGGGMGDNGTAMAWIDGIIKDLIHISTHVSIPQLIQNVREIIHPCNPNLAALLEYRLRSLTT 275          
BLAST of FC917684 vs. ExPASy Swiss-Prot
Match: SCR_ARATH (Protein SCARECROW OS=Arabidopsis thaliana GN=SCR PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.809e-22
Identity = 66/133 (49.62%), Postives = 82/133 (61.65%), Query Frame = 2
Query:  428 AVCGFSGLPLFPPADHHQRNRNAASIGLIPAAPSCTSANNLASSMEDSSATAWIDGIIKDLIHNSANVSIPQLIHNVREIIFPCNPNLAALLEYRLRSLNSEPLLERSRNKDAALPLHMLQRANYYINNNNTP 826
            +VCGFSGLP+FP +D   RN       ++   P      +  SS   +S T W+D II+DLIH+S +VSIPQLI NVR+IIFPCNPNL ALLEYRLRSL    LL+ S + D   P        Y I+NN +P
Sbjct:  102 SVCGFSGLPVFP-SDRGGRNV------MMSVQPM-----DQDSSSSSASPTVWVDAIIRDLIHSSTSVSIPQLIQNVRDIIFPCNPNLGALLEYRLRSL---MLLDPSSSSD---PSPQTFEPLYQISNNPSP 216          
BLAST of FC917684 vs. ExPASy Swiss-Prot
Match: SCR2_ORYSJ (Protein SCARECROW 2 OS=Oryza sativa subsp. japonica GN=SCR2 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 8.140e-15
Identity = 49/98 (50.00%), Postives = 64/98 (65.31%), Query Frame = 2
Query:  449 LPLFPPADHHQRNRNAASIGLIPAAPSCTSANNLASSMEDSSATAWIDGIIKDLIHNS-ANVSIPQLIHNVREIIFPCNPNLAALLEYRLRS-LNSEP 736
            LP   PA HH          +  AAP+  +   +A+      +TAW+DGII+D+I +S A VS+ QLIHNVREII PCNP+LA++LE RLRS LNS+P
Sbjct:  103 LPTQLPAFHHT--------DMDLAAPAPPAPQQVAAGEGGPPSTAWVDGIIRDIIASSGAAVSVAQLIHNVREIIRPCNPDLASILELRLRSLLNSDP 192          
BLAST of FC917684 vs. ExPASy Swiss-Prot
Match: SCR2_ORYSI (Protein SCARECROW 2 OS=Oryza sativa subsp. indica GN=SCR2 PE=3 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 8.140e-15
Identity = 49/98 (50.00%), Postives = 64/98 (65.31%), Query Frame = 2
Query:  449 LPLFPPADHHQRNRNAASIGLIPAAPSCTSANNLASSMEDSSATAWIDGIIKDLIHNS-ANVSIPQLIHNVREIIFPCNPNLAALLEYRLRS-LNSEP 736
            LP   PA HH          +  AAP+  +   +A+      +TAW+DGII+D+I +S A VS+ QLIHNVREII PCNP+LA++LE RLRS LNS+P
Sbjct:  103 LPTQLPAFHHT--------DMDLAAPAPPAPQQVAAGEGGPPSTAWVDGIIRDIIASSGAAVSVAQLIHNVREIIRPCNPDLASILELRLRSLLNSDP 192          
BLAST of FC917684 vs. ExPASy Swiss-Prot
Match: SCR_MAIZE (Protein SCARECROW OS=Zea mays GN=SCR PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.813e-14
Identity = 49/90 (54.44%), Postives = 61/90 (67.78%), Query Frame = 2
Query:  461 PPADHHQRNRNAASIGLIPAAPSCTSANNLASSMEDSSATAWIDGIIKDLIHNS--ANVSIPQLIHNVREIIFPCNPNLAALLEYRLRSL 724
            PPA  H    +A  +  +PA P+  +A+  A     +S TAW+DGII+D+I +S  A VSI QLIHNVREII PCNP LA+LLE RLRSL
Sbjct:  108 PPAFQH----HAPEVD-VPAHPA-PAAHAQAGGEATASTTAWVDGIIRDIIGSSGGAAVSITQLIHNVREIIHPCNPGLASLLELRLRSL 191          
BLAST of FC917684 vs. ExPASy Swiss-Prot
Match: SCR1_ORYSJ (Protein SCARECROW 1 OS=Oryza sativa subsp. japonica GN=SCR1 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.175e-13
Identity = 50/98 (51.02%), Postives = 62/98 (63.27%), Query Frame = 2
Query:  449 LPLFPPADHHQRNRNAASIGLIPAAPSCTSANNLASSMEDSSATAWIDGIIKDLIHNS-ANVSIPQLIHNVREIIFPCNPNLAALLEYRLRS-LNSEP 736
            LP   PA HH     AA     PA P       +A+      +TAW+DGII+D+I +S A VS+ QLIHNVREII PCNP+LA++LE RLRS L S+P
Sbjct:  100 LPTQLPAFHHTDMDLAA-----PAPPP--PQQQVAAGEGGPPSTAWVDGIIRDIIASSGAAVSVAQLIHNVREIIRPCNPDLASILELRLRSLLTSDP 190          
BLAST of FC917684 vs. ExPASy Swiss-Prot
Match: SCR1_ORYSI (Protein SCARECROW 1 OS=Oryza sativa subsp. indica GN=SCR1 PE=3 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 1.175e-13
Identity = 50/98 (51.02%), Postives = 62/98 (63.27%), Query Frame = 2
Query:  449 LPLFPPADHHQRNRNAASIGLIPAAPSCTSANNLASSMEDSSATAWIDGIIKDLIHNS-ANVSIPQLIHNVREIIFPCNPNLAALLEYRLRS-LNSEP 736
            LP   PA HH     AA     PA P       +A+      +TAW+DGII+D+I +S A VS+ QLIHNVREII PCNP+LA++LE RLRS L S+P
Sbjct:  100 LPTQLPAFHHTDMDLAA-----PAPPP--PQQQVAAGEGGPPSTAWVDGIIRDIIASSGAAVSVAQLIHNVREIIRPCNPDLASILELRLRSLLTSDP 190          
The following BLAST results are available for this feature:
BLAST of FC917684 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
SCR_PEA7.847e-2634.83Protein SCARECROW OS=Pisum sativum GN=SCR PE=2 SV=... [more]
SCR_IPONI1.480e-2439.04Protein SCARECROW OS=Ipomoea nil GN=SCR PE=1 SV=1[more]
SCR_ARATH1.809e-2249.62Protein SCARECROW OS=Arabidopsis thaliana GN=SCR P... [more]
SCR2_ORYSJ8.140e-1550.00Protein SCARECROW 2 OS=Oryza sativa subsp. japonic... [more]
SCR2_ORYSI8.140e-1550.00Protein SCARECROW 2 OS=Oryza sativa subsp. indica ... [more]
SCR_MAIZE1.813e-1454.44Protein SCARECROW OS=Zea mays GN=SCR PE=2 SV=1[more]
SCR1_ORYSJ1.175e-1351.02Protein SCARECROW 1 OS=Oryza sativa subsp. japonic... [more]
SCR1_ORYSI1.175e-1351.02Protein SCARECROW 1 OS=Oryza sativa subsp. indica ... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA79DD12RM1 IVIA1 Citrus clementina cDNA clone IC0AAA79DD12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC917684 ID=FC917684; Name=FC917684; organism=Citrus clementina; type=EST; length=876bp
TGATGATCATCAGAGTCCAACAATAATGACAAGCGCCTCCAATAGCACCA
GCGGCAGCAATAACGAGGGTAAGATGGTGAGAAAGAGGACGGCTTCGGAG
ATGGAGGTGCAGCAGCAGCAGCTGTATAGTGGGAGTAGTGATTATTATCG
TAGCAGGTTGCCCAGAAGAAATAACCCAATCAATCAAGCCCCCACCGCCA
CCCCATCAGCAATCCCCAACTACTCCACTATGTCGTCTTTCAATGATAAT
GTCAATATGAGTACGCTAACGCTGCCACCTTCTTCCCTCATCAACAACGT
GACGTCAGGTGCTTCTGGATTTTTGTCTACTGCTACATCAGCAGCAACGA
GAACCACTACAAACTTTAGTTGCATTGACAATCTTTCCCCTCATAATAAT
CACCAACAGCCGCAGCCTCCTCCTCCTGCTGTTTGTGGCTTCTCGGGTCT
GCCTTTGTTCCCACCGGCTGATCATCACCAGAGAAATCGAAACGCGGCGT
CCATCGGCTTGATTCCGGCCGCCCCCAGTTGTACTAGTGCTAATAATCTT
GCTTCTTCTATGGAGGATAGCTCGGCCACGGCTTGGATCGACGGCATCAT
AAAGGACCTTATCCATAATTCAGCCAACGTGTCGATTCCTCAACTCATCC
ACAACGTCAGGGAGATCATCTTCCCTTGTAACCCTAATCTTGCTGCCCTC
CTCGAGTACCGCCTCCGCTCTCTTAATTCTGAGCCACTATTGGAGAGATC
AAGGAACAAAGACGCGGCGTTGCCTTTGCATATGCTGCAAAGGGCAAACT
ACTATATCAATAATAACAATACTCCGCAGCAGCAGCAGCAGCAGCAGCAA
GGCTCTTCTGGGCTTACTCTTCATCT
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