FC917690

Overview
NameFC917690
Unique NameFC917690
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length909
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5697 contig Ccv1_Contig5697:4..912. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC917690 vs. ExPASy Swiss-Prot
Match: CH10C_ARATH (20 kDa chaperonin, chloroplastic OS=Arabidopsis thaliana GN=CPN21 PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 1.169e-11
Identity = 35/46 (76.09%), Postives = 39/46 (84.78%), Query Frame = 3 
Query:  771 LMAVQYTSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEV 908
            ++A +YTSIKPLGDRVLVKIK  EEKT GGI LPS AQ+KPQ GEV
Sbjct:   54 VVAPKYTSIKPLGDRVLVKIKEAEEKTLGGILLPSTAQSKPQGGEV 99
[Close]
BLAST of FC917690 vs. ExPASy Swiss-Prot
Match: CH10C_SPIOL (20 kDa chaperonin, chloroplastic OS=Spinacia oleracea GN=CPN21 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.402e-11
Identity = 32/42 (76.19%), Postives = 37/42 (88.10%), Query Frame = 3 
Query:  783 QYTSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEV 908
            +YTS+KPLGDRVL+K K VEEKT  GIFLP+AAQ KPQ+GEV
Sbjct:   60 KYTSVKPLGDRVLIKTKIVEEKTTSGIFLPTAAQKKPQSGEV 101
The following BLAST results are available for this feature:
BLAST of FC917690 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
CH10C_ARATH1.169e-1176.0920 kDa chaperonin, chloroplastic OS=Arabidopsis th... [more]
CH10C_SPIOL3.402e-1176.1920 kDa chaperonin, chloroplastic OS=Spinacia olera... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA55AA10RM1 IVIA1 Citrus clementina cDNA clone IC0AAA55AA10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC917690 ID=FC917690; Name=FC917690; organism=Citrus clementina; type=EST; length=909bp
TCGACTCTTCTTCAAATTTCAACTAGAAACCTTATCAAACTACTCGCTCG
CTTCTCGCTTATCATTTCCAATCAGAATCTCTCTCGCTCTCTCTGCATCT
GCAAGGTACAGTTTCTTTTCCATTGGTTGTTTTATTTTTAAATGACTGAA
AAGTCAGCTCTGAGACTGTGCTGTATGTTGAATTGAAACGAACAGCAGAT
GGCGACAGCTCAGCTAACAGCGTCATCAATTAAGGTTCCAGCAAGGAGCT
TGACTTCATTCGATGGTCTCAGACCGTCTTCCGTCAAGTTCGCTTCCGTC
GGAGGTGCTGCCAGCCAACGCTCTTTCCGTCGCTTGGTCGTTAAAGCCGC
TGCAGTCGTGGCTCCCAAGGTAATTTTATCCTTTAATAAAAGCAGCATTG
ATAATTCTAAAATTTACTTATTTTTTCGAATGTCTGGCCTCATGTTTTTA
GTGCTTGATGAATTGATGCATTATCGATTTTTCATGAATTTTTGGGAGAT
GATTTTTTAATACATTTTGATTTGTTTTTAACTGAAGGCACTTCCATGAC
TAATTTGGCTCTAAAACCCACTGATAAATTGGTTTGTATTTCACTTTAAA
TGAGTCTTGCATTTGTTTCTTTAGTCTGGTAGTGTGCATTATATTTTTGT
TCTGACTGTGCGTGTTATATTTTCAATTCCGTGTGAATGTTGCACATCTA
TCTCTTCTGTTAATGTTAGTAAATGATCAGATGATTTGAGCTTGTTTGCT
TGTCATTCAATTATTTTGATCTTATGGCTGTGCAGTACACTTCAATTAAA
CCTTTGGGTGATAGAGTGCTGGTGAAAATCAAGACTGTAGAGGAGAAAAC
TGATGGTGGTATTTTTCTGCCATCTGCAGCTCAAACAAAGCCTCAAGCAG
GTGAGGTGG
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