FC917776

Overview
NameFC917776
Unique NameFC917776
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length771
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6006 contig Ccv1_Contig6006:1..771. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC917776 vs. ExPASy Swiss-Prot
Match: THRC1_ARATH (Threonine synthase 1, chloroplastic OS=Arabidopsis thaliana GN=TS1 PE=1 SV=1)

HSP 1 Score: 324.709 bits (831), Expect = 3.459e-88
Identity = 167/214 (78.04%), Postives = 173/214 (80.84%), Query Frame = 2
Query:  224 DENIRDEARRQRSTTNNTFSAKYVPFNAGPDSPEFYSLDEIVYRSRSGGLLDVQHDMESLKKFDGAYWRDLFDSRV--------------------------------GNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISIAQLVQPIANGAFV 769
            ++NIRDEARR RS   N FSAKYVPFNA P S E YSLDEIVYRSRSGGLLDV+HDME+LK+FDGAYWRDLFDSRV                                GNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYCASAGIPSIVFLPANKIS+AQLVQPIANGAFV
Sbjct:   61 EDNIRDEARRNRSNAVNPFSAKYVPFNAAPGSTESYSLDEIVYRSRSGGLLDVEHDMEALKRFDGAYWRDLFDSRVGKSTWPYGSGVWSKKEWVLPEIDDDDIVSAFEGNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISMAQLVQPIANGAFV 274          
BLAST of FC917776 vs. ExPASy Swiss-Prot
Match: THRC_SOLTU (Threonine synthase, chloroplastic OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 313.153 bits (801), Expect = 1.041e-84
Identity = 163/214 (76.17%), Postives = 172/214 (80.37%), Query Frame = 2
Query:  224 DENIRDEARRQRSTTNNTFSAKYVPFNAGPDSPEFYSLDEIVYRSRSGGLLDVQHDMESLKKFDGAYWRDLFDSRV--------------------------------GNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISIAQLVQPIANGAFV 769
            DENIR+EARR  S+ N  FSA+YVPFNAGP+S E+YSLDEIVYRSRSGGLLDVQHDM++LKKFDG YWR LFDSRV                                GNSNLFWAERFGKQFLGM DLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKM +PVVGVGCASTGDTSAALSAYCASAGIPSIVFLPANKIS+AQLVQPIANGAFV
Sbjct:   56 DENIREEARRHCSSHN--FSARYVPFNAGPNSDEWYSLDEIVYRSRSGGLLDVQHDMDALKKFDGQYWRSLFDSRVGKTTWPYGSGVWSKKEWVLPEIDSDDIVSAFEGNSNLFWAERFGKQFLGMTDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMHKPVVGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISMAQLVQPIANGAFV 267          
BLAST of FC917776 vs. ExPASy Swiss-Prot
Match: THRC2_ARATH (Threonine synthase 2, chloroplastic OS=Arabidopsis thaliana GN=TS2 PE=1 SV=1)

HSP 1 Score: 292.738 bits (748), Expect = 1.457e-78
Identity = 161/270 (59.63%), Postives = 181/270 (67.04%), Query Frame = 2
Query:   56 MASCSLFHPQTKIKPFNQNHPRLTYRPPTVISCSFXXXXXXXXXXXXXXXXXXXXXDENIRDEARRQRSTTNNTFSAKYVPFNAGPDSPEFYSLDEIVYRSRSGGLLDVQHDMESLKKFDGAYWRDLFDSRV--------------------------------GNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISIAQLVQPIANGAFV 769
            MAS SL H  T    +  +H   + +P +  S +                      DENIRDEARR+     N  SA+YVPFNA P S E YSLDEIVYRS+SG LLDVQHD  +LK++DG +WR+LFDSRV                                GNSNLFWAERFGKQ+L MNDLWVKHCGISHTGSFKDLGM+VLVSQVNRLRKM +PV+GVGCASTGDTSAALSAYCASAGIPSIVFLPA+KIS+AQLVQPIANGAFV
Sbjct:    1 MASFSLPHSAT----YFPSHSETSLKPHSAASFTVRCTSASPAVPPQTPQKPRRSPDENIRDEARRRPHQLQN-LSARYVPFNAPPSSTESYSLDEIVYRSQSGALLDVQHDFAALKRYDGEFWRNLFDSRVGKTNWPYGSGVWSKKEWVLPEIDDDDIVSAFEGNSNLFWAERFGKQYLQMNDLWVKHCGISHTGSFKDLGMSVLVSQVNRLRKMNKPVIGVGCASTGDTSAALSAYCASAGIPSIVFLPADKISMAQLVQPIANGAFV 265          
BLAST of FC917776 vs. ExPASy Swiss-Prot
Match: THRC_METJA (Probable threonine synthase OS=Methanocaldococcus jannaschii GN=thrC PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.457e-19
Identity = 65/167 (38.92%), Postives = 94/167 (56.29%), Query Frame = 2
Query:  329 YSLDEIVYRSRSGGLLDVQHDMESLK---------KFDGAYWRDLF------DSRV-----GNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISIAQLVQPIANGAFV 769
            Y +DEI+Y    GGLL++ +D E +K         K +   WR L       +S++     G + L+      K+ LG+ +L+VK+ G + TGSFKD GMTV V++ N L      V  VGCASTG+TSA+L+AY A +G   IV LP  K+++ +L Q +  GA V
Sbjct:   12 YDVDEIIYTCECGGLLEIIYDYEEIKDKVSEEKLRKREIGVWRYLEYLPVKDESKIVSLCEGGTPLYRCNNLEKE-LGIKELYVKNEGANPTGSFKDRGMTVGVTRANELG-----VEVVGCASTGNTSASLAAYSARSGKKCIVLLPEGKVALGKLAQAMFYGAKV 172          
The following BLAST results are available for this feature:
BLAST of FC917776 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
THRC1_ARATH3.459e-8878.04Threonine synthase 1, chloroplastic OS=Arabidopsis... [more]
THRC_SOLTU1.041e-8476.17Threonine synthase, chloroplastic OS=Solanum tuber... [more]
THRC2_ARATH1.457e-7859.63Threonine synthase 2, chloroplastic OS=Arabidopsis... [more]
THRC_METJA4.457e-1938.92Probable threonine synthase OS=Methanocaldococcus ... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA58BF11RM1 IVIA1 Citrus clementina cDNA clone IC0AAA58BF11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC917776 ID=FC917776; Name=FC917776; organism=Citrus clementina; type=EST; length=771bp
CGAGCTCCAGCACAAAGATACCCAAAACGACAGCCGCTGTGAGCATTTAT
CGAACATGGCATCTTGCTCACTGTTTCACCCCCAAACCAAAATCAAACCG
TTCAATCAAAACCACCCTCGCCTCACATACCGTCCGCCCACCGTTATCTC
TTGCAGCTTCTCCACATCCAATCCCTCCTCTCCTCCTCCACCAGCAGCGG
CTTCAAAAAATCGCCGCGCAGCCGATGAGAACATTCGTGACGAAGCTCGA
CGACAACGTTCCACTACAAATAACACTTTTTCCGCGAAGTACGTACCCTT
CAATGCGGGTCCTGATTCACCCGAGTTCTACTCGCTCGACGAGATTGTCT
ACCGGAGCCGCTCCGGCGGCCTTCTCGACGTTCAGCACGACATGGAGTCG
TTGAAGAAATTCGACGGCGCCTACTGGAGAGACCTCTTCGACTCTCGCGT
GGGGAACTCCAACTTGTTCTGGGCGGAGCGTTTTGGCAAACAGTTCCTGG
GCATGAATGATTTGTGGGTTAAACACTGCGGTATTAGCCACACTGGGAGT
TTCAAAGACTTGGGCATGACCGTTTTGGTCAGCCAAGTCAACAGACTTCG
TAAAATGAAACGACCCGTCGTCGGAGTCGGCTGTGCATCCACCGGTGACA
CATCAGCTGCTCTATCTGCTTATTGTGCCTCAGCAGGTATTCCTTCCATT
GTGTTTTTACCTGCCAATAAGATTTCAATAGCTCAATTGGTGCAGCCAAT
TGCCAATGGGGCTTTTGTTTT
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