FC917833

Overview
NameFC917833
Unique NameFC917833
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length770
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC917833_ssr327 microsatellite FC917833_ssr327:327..338. BLAST: Citrus ESTs to Prunus persica proteins V1
FC917833_ssr47 microsatellite FC917833_ssr47:47..58. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9006 contig Ccv1_Contig9006:1..770. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC917833 vs. ExPASy Swiss-Prot
Match: Y4990_ARATH (Uncharacterized protein At4g19900 OS=Arabidopsis thaliana GN=At4g19900 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.032e-20
Identity = 46/76 (60.53%), Postives = 60/76 (78.95%), Query Frame = 3 
Query:  546 SSSSYYFDHLSGSIRRAFNKRSIDDWDFDYSGFTTLQSNVEDK-SKTAFGSDDFPVDDEVRRKMTLVKDIEDALLL 770
            SSS +YFDH++G IRRAFNKRSID+WD+DY+GF+    +  DK S+ AFGSDD P+D+ +RRK+  V  +EDALLL
Sbjct:  123 SSSGFYFDHVNGVIRRAFNKRSIDEWDYDYTGFSIDSDSSGDKSSRAAFGSDDVPLDESIRRKIVEVTSVEDALLL 198
The following BLAST results are available for this feature:
BLAST of FC917833 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y4990_ARATH4.032e-2060.53Uncharacterized protein At4g19900 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAQ5YN03RM1 IVIA1 Citrus clementina cDNA clone KN0AAQ5YN03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC917833 ID=FC917833; Name=FC917833; organism=Citrus clementina; type=EST; length=770bp
CAATATATTATATATATCATCAATGAGTATTAAAAAAAAATAGTAATTAT
TTATTTATTATTCATAATTTTTCCTGAAAGATTTAAAATAATAACAATTA
ATTAGTAAGTTAAGTTAAGCGCCTTTCCTTGCTTCAACTCAATTCAATCA
ATTCATCAGTTCAGTTCGCTGAGTGAAGAAAGCGTTTGATTACAAGCTGT
CAAAACTCAGCTCAGGCTAGCAATGTCTATAATCCTTCGACAACGTTAAT
TGAAAAGATGCTACGAACACTAAGGGCACGGCGGCGGCCCCGTTACGGAG
CGCAAGTATGCGCCTTGATCGCCGCACTCCTCCTCCTCCTTTCTGTATCT
CTTCTCCACACTCGCCTCTCCCAGCCCAACCAAATTCTCCGTCACCACCA
ACTTGCGTCAGACGACGCCGTTTTCATCGATCCCCTCCTCTCCGATTCCG
ACGACTCCAATGACAACAACGTGGACAAGATCGACGAGCTGGACACCCTC
GACGACAACGACGTCGTTGTCGACAACGAAGAGAAGCCCAAGATGTCTTC
ATCTAGTTATTACTTCGATCACCTGTCTGGCTCCATAAGACGCGCATTCA
ACAAGAGATCAATCGATGACTGGGATTTTGACTACTCGGGATTTACTACT
CTACAGTCGAATGTCGAGGATAAAAGTAAGACCGCGTTTGGATCAGATGA
TTTTCCCGTCGATGATGAGGTGAGGAGAAAGATGACTTTAGTGAAGGATA
TTGAGGATGCGTTGCTGTTG
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