FC917847

Overview
NameFC917847
Unique NameFC917847
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length933
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10588 contig Ccv1_Contig10588:78..1010. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC917847 vs. ExPASy Swiss-Prot
Match: FBW4_ARATH (F-box/WD-40 repeat-containing protein At3g52030 OS=Arabidopsis thaliana GN=At3g52030 PE=2 SV=2)

HSP 1 Score: 325.479 bits (833), Expect = 2.721e-88
Identity = 171/300 (57.00%), Postives = 203/300 (67.67%), Query Frame = 3 
Query:  120 TIESLNGDIICIIFSSLGFFDLVRCSAVCNSWNAIINRCKLLQLLYCKLHGFSNTSGSS-------LRLHLEELAMKHHRFALEESRIDIDQWKAHSVGVDQCRMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESK---------------------IVGLVGTRICIWRRNGLRSVFPSLEGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQXXXXXXXXXXXXXXXXXXDQRVATLRST-DCTGIKTLCYNPCSRLVFAG 932
            +IESL+ DI+CIIFS L  FDLV C+ VCNSWNA+I R KLLQ    K+H   + S SS         + +E+ AMKHH+ AL   RI+I++W+AHS  V QCRMK+GL+LTGVGDKVMRLWSL+ YKC+EEYSLP+A+SL+DFDFDESK                     IVGLVGTRI IWRRNG RS+FPS  GTF KGLCMRY DPEAVVGCEDGTARVFDMYS+ CSQIIR    P+T LSLS++Q                  DQ VATL+ST    GI+T+C+N  + L F G
Sbjct:   22 SIESLDADILCIIFSFLDLFDLVHCTVVCNSWNAVIKRLKLLQASCRKMHHLGSDSPSSSTSLDRPAEIDVEDFAMKHHKMALLRGRIEIERWEAHSHRVSQCRMKKGLLLTGVGDKVMRLWSLKSYKCMEEYSLPDASSLIDFDFDESKKLEVVSLAWEYFDSVVVVVVEIVGLVGTRISIWRRNGQRSIFPSRAGTFPKGLCMRYIDPEAVVGCEDGTARVFDMYSKTCSQIIRTQGGPITCLSLSDNQLFLSGSSLGRVTVSDPLMDQPVATLKSTITAGGIQTICFNQGTNLAFIG 321
The following BLAST results are available for this feature:
BLAST of FC917847 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
FBW4_ARATH2.721e-8857.00F-box/WD-40 repeat-containing protein At3g52030 OS... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA100AC03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA100AC03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC917847 ID=FC917847; Name=FC917847; organism=Citrus clementina; type=EST; length=933bp
CCTTCGTCTCTCGTGCCACACTAAGTTGGACAACCGCCGACGGCAGATAG
ACGATGGAGCGCACAAGGTCCAGTAGGCGGTCACCGCCGCCGAAGAAGAG
AAGCTCGAAACCTCGGGCGACAATTGAATCCCTCAACGGCGACATAATCT
GTATAATCTTCTCATCCCTCGGGTTCTTCGATCTCGTTAGATGTTCTGCC
GTTTGCAACTCCTGGAACGCCATTATAAACAGATGTAAGTTACTACAACT
ACTCTATTGCAAGCTACATGGCTTCTCGAATACGTCGGGTTCTTCGTTGA
GGTTGCATTTGGAGGAGCTAGCAATGAAGCACCATCGATTTGCTTTAGAA
GAAAGTCGAATTGATATTGATCAATGGAAAGCTCATTCAGTTGGGGTTGA
TCAGTGCCGAATGAAGAGGGGTTTGATTCTAACTGGTGTAGGTGATAAGG
TTATGCGGCTCTGGTCACTAGAAGGATACAAATGTGTGGAAGAGTATTCA
CTTCCAAATGCAGCTTCACTGGTTGATTTTGATTTTGATGAGAGCAAGAT
TGTTGGTTTGGTTGGCACACGTATATGCATATGGAGGCGCAATGGTTTAA
GGAGTGTATTTCCCTCACTTGAAGGCACATTCATGAAGGGTTTATGTATG
CGATACTTTGATCCAGAGGCTGTAGTTGGATGTGAGGATGGGACTGCTCG
TGTGTTTGACATGTATAGTAGAAAATGCTCTCAAATCATTAGGATGCATT
GTGCACCAGTAACATCTTTATCTTTGAGTGAGGATCAGTTAATTATTAGT
GGATCCTCCCTGGGCAGTATCGCAATAGCTGGTCTCTCCTCTGATCAGCG
GGTAGCTACCCTTAGATCAACTGATTGTACAGGCATAAAGACTTTGTGTT
ACAACCCATGTTCTCGTCTGGTATTTGCTGGAA
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