FC917857

Overview
NameFC917857
Unique NameFC917857
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length904
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10484 contig Ccv1_Contig10484:5..908. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: ISW2_ARATH (Putative chromatin-remodeling complex ATPase chain OS=Arabidopsis thaliana GN=At3g06400 PE=2 SV=2)

HSP 1 Score: 311.612 bits (797), Expect = 3.914e-84
Identity = 160/213 (75.12%), Postives = 170/213 (79.81%), Query Frame = 1
Query:  274 ADISKRXXXXXXXXXXXXXXXXXXXXXXXNAAIDADMNNRGKGRLKYLLQQTELFSHFAKGDQSASQKKAKGRGRHASKLTXXXXXXXXXXXXXDGLS---NTRLVTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENLLVA 903
            A+ISKR                       NA+IDADMNN+GKGRLKYLLQQTELF+HFAK D S+SQKKAKGRGRHASK+T             DGL+   NTRL+TQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLL YLHE+RGI GPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRE+LLVA
Sbjct:   74 AEISKREKARLKEMQKLKKQKIQEMLESQNASIDADMNNKGKGRLKYLLQQTELFAHFAKSDGSSSQKKAKGRGRHASKITEEEEDEEYLKEEEDGLTGSGNTRLLTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLAYLHEYRGINGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIREDLLVA 286          
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: ISW2_ORYSJ (Probable chromatin-remodeling complex ATPase chain OS=Oryza sativa subsp. japonica GN=Os01g0367900 PE=2 SV=2)

HSP 1 Score: 292.352 bits (747), Expect = 2.458e-78
Identity = 144/182 (79.12%), Postives = 159/182 (87.36%), Query Frame = 1
Query:  361 NAAIDADMNNRGKGRLKYLLQQTELFSHFAKGDQSASQKKAKGRGRHASKLTXXXXXXXXXXXXXDGLSN---TRLVTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENLL 897
            NAA+DADMNN+GKGRLKYLLQQTE+F+HFAKG+QS  +KK +GRGRHASK+T             D L+    TRL++QPSCI+GKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNW+ EI+RFCP+LRAVKFLGNPEER HIRENLL
Sbjct:  146 NAAVDADMNNKGKGRLKYLLQQTEIFAHFAKGNQS-KEKKPRGRGRHASKMTEEEEDEEYLKEEEDALAGSGGTRLLSQPSCIKGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWIKEIQRFCPILRAVKFLGNPEERNHIRENLL 326          
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: ISWI_DROME (Chromatin-remodeling complex ATPase chain Iswi OS=Drosophila melanogaster GN=Iswi PE=1 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 3.360e-35
Identity = 85/191 (44.50%), Postives = 113/191 (59.16%), Query Frame = 1
Query:  370 IDADMNNRGKGRLKYLLQQTELFSHFAKGDQSASQKKAKGRGR-------------HASKLTXXXXXXXXXXXXXDGLSNTRLVTQPSCIQ-GKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENLLV 900
            I+AD + R      +LL+QTE+F+HF   + + S  K KGR +             H  + T                   R    P+ I+ G+MRDYQ+ GLNW+I LYENGINGILADEMGLGKTLQTISLLGYL  F+   GPH+V+ PKSTL NW+NE +++CP LRAV  +G+ + R     ++L+
Sbjct:   39 IEADRSRR----FDFLLKQTEIFTHFMT-NSAKSPTKPKGRPKKIKDKDKEKDVADHRHRKTEQEEDEELLAEDSATKEIFRFDASPAYIKSGEMRDYQIRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYLKHFKNQAGPHIVIVPKSTLQNWVNEFKKWCPSLRAVCLIGDQDTRNTFIRDVLM 224          
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: SMCA5_HUMAN (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 OS=Homo sapiens GN=SMARCA5 PE=1 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 4.389e-35
Identity = 88/186 (47.31%), Postives = 113/186 (60.75%), Query Frame = 1
Query:  403 RLKYLLQQTELFSHF----AKGDQSASQKKAKGR--------------GRHASKLTXXXXXXXXXXXXXDGLSN-TRLVTQPSCIQ-GKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEER-RHIRENLL 897
            R +YLL+QTELF+HF    A+   ++  K   GR              G +  + T                +  TR    PS ++ GK+RDYQ+ GLNWLI LYENGINGILADEMGLGKTLQTISLLGY+  +R I GPHMV+ PKSTL NWM+E +R+ P LR+V  +G+ E+R   +R+ LL
Sbjct:   91 RFEYLLKQTELFAHFIQPAAQKTPTSPLKMKPGRPRIKKDEKQNLLSVGDYRHRRTEQEEDEELLTESSKATNVCTRFEDSPSYVKWGKLRDYQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIPGPHMVLVPKSTLHNWMSEFKRWVPTLRSVCLIGDKEQRAAFVRDVLL 276          
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: SMCA5_MOUSE (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 OS=Mus musculus GN=Smarca5 PE=1 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 9.777e-35
Identity = 87/186 (46.77%), Postives = 113/186 (60.75%), Query Frame = 1
Query:  403 RLKYLLQQTELFSHF----AKGDQSASQKKAKGR--------------GRHASKLTXXXXXXXXXXXXXDGLSN-TRLVTQPSCIQ-GKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEER-RHIRENLL 897
            R +YLL+QTELF+HF    A+   ++  K   GR              G +  + T                +  TR    PS ++ GK+RDYQ+ GLNWLI LYENGINGILADEMGLGKTLQTISLLGY+  +R I GPHMV+ PKSTL NWM+E +++ P LR+V  +G+ E+R   +R+ LL
Sbjct:   90 RFEYLLKQTELFAHFIQPAAQKTPTSPLKMKPGRPRVKKDEKQNLLSVGDYRHRRTEQEEDEELLTESSKATNVCTRFEDSPSYVKWGKLRDYQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIPGPHMVLVPKSTLHNWMSEFKKWVPTLRSVCLIGDKEQRAAFVRDVLL 275          
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: SMCA1_MOUSE (Probable global transcription activator SNF2L1 OS=Mus musculus GN=Smarca1 PE=1 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.844e-33
Identity = 84/186 (45.16%), Postives = 111/186 (59.68%), Query Frame = 1
Query:  403 RLKYLLQQTELFSHFAKGDQSAS------QKKAKGRGRHASKLTXXXXXXXXXXXXXDG-----LSNTRLVTQ--------PSCIQG-KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEER-RHIRENLL 897
            R ++LL+QTELF+HF +     S       K A+ R +   K +                    LS +R  +         PS ++G  +RDYQ+ GLNWLI LYENG+NGILADEMGLGKTLQTI+LLGYL  +R I GPHMV+ PKSTL NWMNE +R+ P LR + F+G+ + R   IR+ ++
Sbjct:   98 RFEFLLKQTELFAHFIQPSAQKSPTSPLNMKLARPRVKKDDKQSLISVGDYRHRRTEQEEDEELLSESRKTSNVCVRFEVSPSYVKGGPLRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKSTLHNWMNEFKRWVPSLRVICFVGDKDVRAAFIRDEMM 283          
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: SMCA1_HUMAN (Probable global transcription activator SNF2L1 OS=Homo sapiens GN=SMARCA1 PE=1 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 3.145e-33
Identity = 85/186 (45.70%), Postives = 113/186 (60.75%), Query Frame = 1
Query:  403 RLKYLLQQTELFSHF----AKGDQSASQKKAKGRGR-----HASKLTXXXXXXXXXXXXXDG--LSNTRLVTQ--------PSCIQG-KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEER-RHIRENLL 897
            R ++LL+QTELF+HF    A+   ++      GR R       S ++             D   LS +R  +         PS ++G  +RDYQ+ GLNWLI LYENG+NGILADEMGLGKTLQTI+LLGYL  +R I GPHMV+ PKSTL NWMNE +R+ P LR + F+G+ + R   IR+ ++
Sbjct:   94 RFEFLLKQTELFAHFIQPSAQKSPTSPLNMKLGRPRIKKDEKQSLISAGDYRHRRTEQEEDEELLSESRKTSNVCIRFEVSPSYVKGGPLRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKSTLHNWMNEFKRWVPSLRVICFVGDKDARAAFIRDEMM 279          
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: INO80_CRYNE (Putative DNA helicase INO80 OS=Cryptococcus neoformans GN=INO80 PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.979e-28
Identity = 57/107 (53.27%), Postives = 78/107 (72.90%), Query Frame = 1
Query:  568 NTRLVTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRE 888
            N+  +TQP  +  ++++YQL GL WL  LYE GINGILADEMGLGKT+Q+ISLL YL E   + GP +V+AP STL NW  E+ RF P L+A+ + G+P++R  +R+
Sbjct:  857 NSVTITQPKMLMAQLKEYQLKGLTWLGNLYEQGINGILADEMGLGKTIQSISLLAYLAEHHNLWGPFLVIAPASTLHNWQQELARFVPRLKALPYWGSPKDRETLRK 963          
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: ISW1_CAEEL (Chromatin-remodeling complex ATPase chain isw-1 OS=Caenorhabditis elegans GN=isw-1 PE=1 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 6.786e-28
Identity = 74/184 (40.22%), Postives = 103/184 (55.98%), Query Frame = 1
Query:  403 RLKYLLQQTELFSH-FAKGDQSAS-----QKKAKGR--------GRHASKLTXXXXXXXXXXXXXDGLSNTRLVT---QPSCIQ-GKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENLLV 900
            R + LLQ+TE FSH  + GD   +       K +GR        G H  + T             D + +  LV     P  I+ G+MRDYQ+ GLNWL  L  N INGILADEMGLGKTLQTIS++GY+  ++    PH+V+ PKSTL NW NE +++CP + AV  +G+   R  +  ++++
Sbjct:   48 RFERLLQKTENFSHCLSSGDAKLATGAPVDTKKRGRPSKKNGIDGDHRHRKTEQEEDEEMVA---DAIKSDDLVIFDKSPFYIENGEMRDYQVRGLNWLASLQHNKINGILADEMGLGKTLQTISMIGYMKHYKNKASPHLVIVPKSTLQNWANEFKKWCPSINAVVLIGDEAARNQVLRDVIL 228          
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: INO80_EMENI (Putative DNA helicase ino80 OS=Emericella nidulans GN=ino80 PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 6.786e-28
Identity = 54/103 (52.43%), Postives = 78/103 (75.73%), Query Frame = 1
Query:  580 VTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRE 888
            ++QP+ +  K+++YQL GLNWL+ LYE GINGILADEMGLGKT+Q+IS++ YL E   I GP +V+AP STL NW  EI +F P ++ + + GN ++R+ +R+
Sbjct:  788 ISQPTMLTAKLKEYQLKGLNWLVNLYEQGINGILADEMGLGKTIQSISVMAYLAEVHNIWGPFLVIAPASTLHNWQQEITKFVPNIKVLPYWGNAKDRKILRK 890          
The following BLAST results are available for this feature:
BLAST of FC917857 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 120
Match NameE-valueIdentityDescription
ISW2_ARATH3.914e-8475.12Putative chromatin-remodeling complex ATPase chain... [more]
ISW2_ORYSJ2.458e-7879.12Probable chromatin-remodeling complex ATPase chain... [more]
ISWI_DROME3.360e-3544.50Chromatin-remodeling complex ATPase chain Iswi OS=... [more]
SMCA5_HUMAN4.389e-3547.31SWI/SNF-related matrix-associated actin-dependent ... [more]
SMCA5_MOUSE9.777e-3546.77SWI/SNF-related matrix-associated actin-dependent ... [more]
SMCA1_MOUSE1.844e-3345.16Probable global transcription activator SNF2L1 OS=... [more]
SMCA1_HUMAN3.145e-3345.70Probable global transcription activator SNF2L1 OS=... [more]
INO80_CRYNE3.979e-2853.27Putative DNA helicase INO80 OS=Cryptococcus neofor... [more]
ISW1_CAEEL6.786e-2840.22Chromatin-remodeling complex ATPase chain isw-1 OS... [more]
INO80_EMENI6.786e-2852.43Putative DNA helicase ino80 OS=Emericella nidulans... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA27DG10RM1 IVIA1 Citrus clementina cDNA clone IC0AAA27DG10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC917857 ID=FC917857; Name=FC917857; organism=Citrus clementina; type=EST; length=904bp
AAGAAACCCTCGTTTTGAGGAAAATATTCAAAGAGCGCAATGGCGAAACC
CTCTAAGGCGCGGGAATCGTCCGATGATGCCTTGTCCAACGGCTCCAGTT
CGTCGGAGGAAGAGCAAATCAACGATCAGATCAACGAAGACGACGAGGAG
GAGCTCGAAGCCGTGGCTCGCTCTGCTGATGCTGACTCTGACGACGATAA
CTCTCCGGCGTCCGAAGACGAGGCCGCTGCCGACGGAGACGACGTTGAAG
AGGATGACGACAGTGGGGCTAATGCAGATATTAGCAAGCGTGAAAAGCAG
AGACTAAAAGAAATGCAGAAATTGAAGAAACAAAAGATTCAGGAACTATT
GGATAAACAAAATGCTGCTATTGATGCTGATATGAACAATAGGGGGAAGG
GCCGATTGAAGTATCTATTGCAGCAAACAGAGTTGTTTTCTCATTTTGCG
AAAGGCGATCAATCTGCATCTCAGAAGAAGGCAAAAGGAAGGGGACGCCA
TGCATCTAAACTCACTGAAGAGGAAGAAGATGAAGAATACCTCAAGGAAG
AAGAAGATGGTTTGTCAAACACGCGGCTGGTAACACAACCGTCTTGTATT
CAGGGAAAAATGAGGGATTACCAACTTGCTGGATTGAACTGGCTTATACG
GTTATATGAGAATGGGATAAATGGAATTCTTGCTGATGAAATGGGTCTTG
GTAAAACCTTGCAAACCATATCCTTGTTGGGCTACCTTCATGAGTTCAGA
GGAATTACTGGCCCTCATATGGTGGTTGCTCCAAAATCTACCCTTGGTAA
CTGGATGAACGAAATTCGTCGTTTCTGCCCAGTTTTACGTGCTGTGAAGT
TTCTTGGAAATCCTGAAGAAAGGAGACATATACGTGAAAATTTACTGGTT
GCTG
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