FC917867

Overview
NameFC917867
Unique NameFC917867
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length870
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6699 contig Ccv1_Contig6699:902..1771. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC917867 vs. ExPASy Swiss-Prot
Match: SRPR_DROME (Signal recognition particle receptor subunit alpha homolog OS=Drosophila melanogaster GN=Gtp-bp PE=1 SV=2)

HSP 1 Score: 175.252 bits (443), Expect = 4.094e-43
Identity = 117/300 (39.00%), Postives = 161/300 (53.67%), Query Frame = 2
Query:   41 TSSNIGAFDVSKLQKLRNK--GGKKTDTVVSKGSNPDPKKKITKKNRVWD---DSPPESKLDFT--DPAGGNGSNIEVEAADHGESM---MDKXXXXXXXXXXXXXXXXGKHNKPDAK-KTGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPYXXXXXXXXXXXKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRL-------------QVPIFEKGYEK 868
            T S +    + K +KLR K    KKT    SK S P+   K  KK RVWD   +S   + LD +   P      NI  E     + +   +D                  +      K K G   S F+ I G   +  ADL+PAL+ ++D L++KNVA EIA KLC+SVAASL+GK++ +F  I+S V+ A+ E+LVRIL+P+R IDI+RD   +K   +PY           KSTNLAK+ +WL+++  +V++AACDTFR+GAVEQLRTH R L              V ++EKGY K
Sbjct:  177 TGSPMDKIIMEKRRKLREKLTPTKKTSPSDSKSSKPE---KAGKKPRVWDLGGNSKDAALLDRSRDSPDDVQYQNINSELVGTMQGVIRDLDVESEDEADNEDASSEGEAEEQVQSKKGKRGGLLSYFKGIVGAKTMSLADLQPALEKMRDHLISKNVASEIAAKLCDSVAASLDGKQMGTFDSIASQVKEALTESLVRILSPKRRIDIIRDALESKRNGRPYTIIFCGVNGVGKSTNLAKICFWLIENDFNVLIAACDTFRAGAVEQLRTHTRHLNALHPAAKHDGRNMVQLYEKGYGK 473          
BLAST of FC917867 vs. ExPASy Swiss-Prot
Match: SRPR_DICDI (Signal recognition particle receptor subunit alpha OS=Dictyostelium discoideum GN=srpr PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 5.912e-42
Identity = 116/310 (37.42%), Postives = 156/310 (50.32%), Query Frame = 2
Query:    2 ESRVTGVANGKENTSSNIGAFDV-----SKLQKLRNKGGKKTDTVVSKGSNPDPKKKIT------------KKNRVWDDSPPESK----LDFTDPAGGNGSNIEVEAADHGESMMDKXXXXXXXXXXXXXXXXGKHNKPDAKKTGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPYXXXXXXXXXXXKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEK 868
            E R    AN   + SS+  + D      S  ++  N   K   T V++  N   KKK+             KK R W+D     K    L+ +D    NG+ I  E        MD                    ++ +AK    F   F  + G   +DK DLEP L   K  L  KNVA ++A+K+ +S+   LEGKKLA+F  ++S+V+  ME+ + RILTP+R+IDILR+V A K +R PY           KSTNLAKV YWL  +    M+AACDTFRSGA+EQL+THA RL V +FE+GY K
Sbjct:  179 ERRKQNKANNINDISSDDDSDDSDSSSGSDSEENSNGATKNQQTDVARIENSGYKKKVKDTPDKQASSSTGKKARTWEDGKLSKKELEALNRSD--NSNGTEIVREKIQKFNIDMD-------------VSSSDDDDEEEAKPVSGFMKYFNVLTGNRVIDKQDLEPILADFKLHLTKKNVAPDVADKIVQSIGTGLEGKKLATFQGVTSVVKQQMEDTITRILTPKRNIDILREVQAVKGKR-PYSIVFSGVNGVGKSTNLAKVCYWLTANGYKCMLAACDTFRSGAIEQLKTHADRLNVHLFERGYSK 472          
BLAST of FC917867 vs. ExPASy Swiss-Prot
Match: SRPR_MOUSE (Signal recognition particle receptor subunit alpha OS=Mus musculus GN=Srpr PE=1 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.720e-41
Identity = 109/304 (35.86%), Postives = 162/304 (53.29%), Query Frame = 2
Query:   14 TGVANGKENTSSNIGAFDVSKLQKLRNKGGKKTDTVVSKGSNPDPKKKITKKNRVWDDSPPESK--LDFTDPAGGNGSNIEVEAADHGESMMDKXXXXXXXXXXXXXXXXG--KHNKPDAKK--TGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPYXXXXXXXXXXXKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRL-------------QVPIFEKGYEK 868
            +G++ G EN   +       K ++   K GK  D       +  PK+K  K  RVW+     +K  LD++ P   NG+     + D                        G  ++ KP A K   G    M + + G  +L + D+E  L  ++D L+ KNVA +IA +LCESVA  LEGK + +F+ ++S V+ A++E+LV+IL P+R +D+LRD+  A+ +++PY           KSTNLAK+++WLL++  SV++AACDTFR+GAVEQLRTH RRL              V +FEKGY K
Sbjct:  192 SGLSAGPENGELSKEELIRRKREEFIQKHGKGLDKSSKSTKSDTPKEKGKKAPRVWELGGCANKEVLDYSTPTT-NGTPEAALSEDINLIRGTGPGGQLQDLDCSSSDDEGATQNTKPSATKGTLGGMFGMLKGLVGSKSLSREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGKVMGTFSTVTSTVKQALQESLVQILQPQRRVDMLRDIMDAQRRQRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAACDTFRAGAVEQLRTHTRRLTALHPPEKHGGRTMVQLFEKGYGK 494          
BLAST of FC917867 vs. ExPASy Swiss-Prot
Match: SRPR_BOVIN (Signal recognition particle receptor subunit alpha OS=Bos taurus GN=SRPR PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 9.439e-40
Identity = 102/273 (37.36%), Postives = 144/273 (52.75%), Query Frame = 2
Query:  125 SKGSNPD-PKKKITKKNRVW--DDSPPESKLDFTDPAGGNGSNIE-------VEAADHGESMMDKXXXXXXXXXXXXXXXXGKHNKPDAKK--TGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPYXXXXXXXXXXXKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRL-------------QVPIFEKGYEK 868
            SK S  D PK+K  K  RVW    S  +  LD++ P                +     G  + D                     KP A K   G    M + + G  +L + D+E  L  ++D L+ KNVA +IA +LCESVA  LEGK + +F+ ++S V+ A++E+LV+IL P+R +D+LRD+  A+  ++PY           KSTNLAK+++WLL++  SV++AACDTFR+GAVEQLRTH RRL              V +FEKGY K
Sbjct:  230 SKSSKSDAPKEKGKKAPRVWALGGSANKEVLDYSTPTTNGAPEAAPPEDINLIRGTGPGRQLQDLDCSSSDDEGAAQ-----NSTKPSATKGTLGGMFGMLKGLVGSKSLTREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGKVMGTFSTVTSTVKQALQESLVQILQPQRRVDMLRDIMDAQRHQRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAACDTFRAGAVEQLRTHTRRLSALHPPEKHGGRTMVQLFEKGYGK 497          
BLAST of FC917867 vs. ExPASy Swiss-Prot
Match: SRPR_HUMAN (Signal recognition particle receptor subunit alpha OS=Homo sapiens GN=SRPR PE=1 SV=2)

HSP 1 Score: 162.925 bits (411), Expect = 2.103e-39
Identity = 104/298 (34.90%), Postives = 154/298 (51.68%), Query Frame = 2
Query:   74 KLQKLRNKGGKKTDTVVSKGSNPDPKKKITKKNRVWDDSPPESK--LDFTDPAG----------------GNGSNIEVEAADHGESMMDKXXXXXXXXXXXXXXXXGKHNKPDAKK--TGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPYXXXXXXXXXXXKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRL-------------QVPIFEKGYEK 868
            K ++   K G+  +       +  PK+K  K  RVW+     +K  LD++ P                  G GS  +++  D   S                        KP A K   G    M + + G  +L + D+E  L  ++D L+ KNVA +IA +LCESVA  LEGK + +F+ ++S V+ A++E+LV+IL P+R +D+LRD+  A+ +++PY           KSTNLAK+++WLL++  SV++AACDTFR+GAVEQLRTH RRL              V +FEKGY K
Sbjct:  213 KREEFIQKHGRGMEKSNKSTKSDAPKEKGKKAPRVWELGGCANKEVLDYSTPTTNGTPEAALSEDINLIRGTGSGGQLQDLDCSSS--------------DDEGAAQNSTKPSATKGTLGGMFGMLKGLVGSKSLSREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGKVMGTFSTVTSTVKQALQESLVQILQPQRRVDMLRDIMDAQRRQRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAACDTFRAGAVEQLRTHTRRLSALHPPEKHGGRTMVQLFEKGYGK 496          
BLAST of FC917867 vs. ExPASy Swiss-Prot
Match: SRPR_CANFA (Signal recognition particle receptor subunit alpha OS=Canis familiaris GN=SRPR PE=2 SV=2)

HSP 1 Score: 160.999 bits (406), Expect = 7.991e-39
Identity = 103/304 (33.88%), Postives = 157/304 (51.64%), Query Frame = 2
Query:   74 KLQKLRNKGGKKTDTVVSKGSNPDPKKKITKKNRVW----------------------DDSPPE--SKLDFTDPAGGNGSNIEVEAADHGESMMDKXXXXXXXXXXXXXXXXGKHNKPDAKK--TGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPYXXXXXXXXXXXKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRL-------------QVPIFEKGYEK 868
            K ++   K G+  +       +  PK+K  K  RVW                      D +PPE  + +  T P GG   +++  ++D  E+  +                    +KP A K   G    M + + G  +L + D+E  L  ++D L+ KNVA +IA +LCESVA  LEGK + +F+ ++S V+ A++E+LV+IL P+R +D+LRD+  A+  ++PY           KSTNLAK+++WLL++  SV++AACDTFR+GAVE +RTH RRL              V +FEKGY K
Sbjct:  213 KREEFIQKHGRGLEKSSKSTKSDAPKEKGKKAPRVWALGGCANKEVLDYSAPTTNGAPDAAPPEDINLIRGTGP-GGQLQDLDCSSSDDEETAQNA-------------------SKPSATKGTLGGMFGMLKGLVGSKSLSREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGKVMGTFSTVTSTVKQALQESLVQILQPQRRVDMLRDIMDAQRHQRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAACDTFRAGAVEHVRTHTRRLSALHPPEKHAGPTMVQLFEKGYGK 496          
BLAST of FC917867 vs. ExPASy Swiss-Prot
Match: SRPR_SCHPO (Signal recognition particle receptor subunit alpha homolog OS=Schizosaccharomyces pombe GN=srp101 PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 3.252e-32
Identity = 89/270 (32.96%), Postives = 130/270 (48.15%), Query Frame = 2
Query:   89 RNKGGKKTDTVVSKGSNPDPKKKITKKNRVWDDSPPESK---LDFTDPAGGNGSNIEVEAADHGESMMDKXXXXXXXXXXXXXXXXGKHNKPDAKKTGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAA-KEQRKPYXXXXXXXXXXXKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQ------VPIFEKGYEK 868
            +N+   K     SK +N   K K  K+ R WDD   E +   L+++  A      ++           +K                  +     K      S+F ++ G   L + DL P LK +++ L  KNVA  IA +LCESV ASL  KK+ SF  + + V  A  + L +ILTP  S+D+L  + +  K + +PY           KST LAK+AYWLL +   +++AACDTFRSGA+EQL  H + LQ      + +F +GY K
Sbjct:  146 KNEYEMKKKGAQSKQTNAPKKGK--KQLRKWDDQITEEEQAALNYSSQASSASQTVDNSQLSSIVGNNNKFQKTGSGDVIISDLEMDPNQTISNKSASSAFSLFSNLIGGKYLKEEDLSPILKQMQEHLTKKNVANSIALELCESVKASLINKKVGSFDTVKNTVNKAFRDRLTQILTPSTSLDLLHSIRSVRKNENRPYTISLIGVNGVGKSTTLAKIAYWLLSNNFRILVAACDTFRSGAIEQLGVHVKNLQSLKGSSIELFAQGYGK 413          
BLAST of FC917867 vs. ExPASy Swiss-Prot
Match: SRPR_YEAST (Signal recognition particle receptor subunit alpha homolog OS=Saccharomyces cerevisiae GN=SRP101 PE=1 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 3.044e-30
Identity = 84/268 (31.34%), Postives = 141/268 (52.61%), Query Frame = 2
Query:   80 QKLRNKGGKKTDTVVSKGSNPDPKKKITKKNRVWDDSPPE--SKLDFTDPAGGNGSNIEVEAADHGESMMDKXXXXXXXXXXXXXXXXGKHNK----PDAKKTGWFSSMF----QSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQR------KPYXXXXXXXXXXXKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRL 835
            +KLR+  GKK  T      N    +K  +   + D+   E  +KLDF+     N S + +++  + +S  D+                   ++     +AK +G+ S+ F    + + G   ++++DL+  L+ L  +L+TKNVA E A+ L + V+  L G K A++T + +  + ++ +AL +ILTP  S+D+LR++ + + ++       PY           KSTNL+K+A+WLLQ+   V++ ACDTFRSGAVEQLR H   L
Sbjct:  189 KKLRDTKGKKQST-----GNVGSGRKWGRDGGMLDEMNHEDAAKLDFSSSNSHNSSQVALDSTINKDSFGDRTEGGDFLIKEIDDLLSSHKDEITSGNEAKNSGYVSTAFGFLQKHVLGNKTINESDLKSVLEKLTQQLITKNVAPEAADYLTQQVSHDLVGSKTANWTSVENTARESLTKALTQILTPGVSVDLLREIQSKRSKKDEEGKCDPYVFSIVGVNGVGKSTNLSKLAFWLLQNNFKVLIVACDTFRSGAVEQLRVHVENL 451          
BLAST of FC917867 vs. ExPASy Swiss-Prot
Match: Y291_METJA (Probable signal recognition particle protein MJ0291 OS=Methanocaldococcus jannaschii GN=MJ0291 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.241e-15
Identity = 50/142 (35.21%), Postives = 80/142 (56.34%), Query Frame = 2
Query:  428 DLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPYXXXXXXXXXXXKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFE 853
            D+E  L+ L+  L+  +VA E+ EKL E++   L G+K++    +  I   A++ A+  IL+  + IDI   +   K + KP            K+T +AK+AY L Q   SV++AA DTFR+GA+EQL  HA+ + V + +
Sbjct:  122 DIEDVLEELEIALLEADVALEVVEKLIENIKNELVGRKISPDDNVEEITINAVKNAIKNILSQEK-IDIEEIIKKNKAEGKPTVIVFVGINGTGKTTTIAKLAYKLKQKGYSVVLAAGDTFRAGAIEQLEQHAKNVGVKVIK 262          
BLAST of FC917867 vs. ExPASy Swiss-Prot
Match: DOCK_SULAC (Probable signal recognition particle protein OS=Sulfolobus acidocaldarius GN=dpa PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.612e-15
Identity = 50/175 (28.57%), Postives = 94/175 (53.71%), Query Frame = 2
Query:  338 GKHNKPDAKKTGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPYXXXXXXXXXXXKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGY 862
            G+ NK + K+     S F  +  K  + + DL   ++ L+ +L+  +V+ E+ EK+ E +  +L GKK++    +  IV   +++++  ILT  +  D++  + ++   +KP+           K+T +AKV   L ++ +S ++AA DTFR+ A EQL  HA +L+V +    Y
Sbjct:   70 GQENKQENKR-----SFFDFLKYKT-IKEDDLNDVIEELRFQLLDSDVSYEVTEKILEDLKNNLIGKKVSRREEVEEIVINTLKKSITEILTKNQKTDLIEKIRSSG--KKPFVIIFFGVNGVGKTTTIAKVVNMLKKNNLSTIIAASDTFRAAAQEQLAYHASKLEVQLIRGKY 236          
The following BLAST results are available for this feature:
BLAST of FC917867 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
SRPR_DROME4.094e-4339.00Signal recognition particle receptor subunit alpha... [more]
SRPR_DICDI5.912e-4237.42Signal recognition particle receptor subunit alpha... [more]
SRPR_MOUSE1.720e-4135.86Signal recognition particle receptor subunit alpha... [more]
SRPR_BOVIN9.439e-4037.36Signal recognition particle receptor subunit alpha... [more]
SRPR_HUMAN2.103e-3934.90Signal recognition particle receptor subunit alpha... [more]
SRPR_CANFA7.991e-3933.88Signal recognition particle receptor subunit alpha... [more]
SRPR_SCHPO3.252e-3232.96Signal recognition particle receptor subunit alpha... [more]
SRPR_YEAST3.044e-3031.34Signal recognition particle receptor subunit alpha... [more]
Y291_METJA1.241e-1535.21Probable signal recognition particle protein MJ029... [more]
DOCK_SULAC3.612e-1528.57Probable signal recognition particle protein OS=Su... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA100AC07RM1 IVIA1 Citrus clementina cDNA clone IC0AAA100AC07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC917867 ID=FC917867; Name=FC917867; organism=Citrus clementina; type=EST; length=870bp
AGAATCTAGGGTAACAGGTGTTGCTAACGGTAAAGAAAATACTAGTTCTA
ATATTGGGGCTTTTGATGTAAGTAAGTTACAGAAGTTAAGAAATAAAGGT
GGTAAGAAAACTGATACTGTTGTTAGCAAGGGTTCAAATCCAGACCCAAA
GAAAAAGATAACAAAGAAGAACAGAGTTTGGGACGATTCGCCTCCAGAGT
CCAAATTGGACTTCACGGATCCTGCAGGTGGAAATGGCAGTAATATCGAG
GTTGAGGCAGCAGATCATGGTGAAAGTATGATGGACAAGGAAGAGGTTTT
CAGCAGTGATAGTGAATCCGAAGAAGATGAAGAAGTGGGTAAGCACAACA
AGCCTGATGCTAAGAAGACGGGCTGGTTTTCATCTATGTTCCAGAGTATT
GCTGGAAAGGCAAACTTGGATAAGGCAGACCTTGAACCCGCTCTGAAAGC
TCTCAAGGATAGGCTCATGACCAAGAATGTTGCTGAGGAGATAGCTGAGA
AACTTTGTGAATCAGTTGCAGCAAGTCTTGAAGGCAAAAAGCTGGCCTCA
TTTACAAGGATTTCTTCAATTGTGCAGGCTGCAATGGAAGAGGCTCTTGT
TCGCATTTTAACTCCTAGGCGTTCCATTGATATATTAAGAGATGTTCACG
CTGCCAAGGAACAACGGAAGCCATATGTAGTTGTTTTCGTTGGTGTTAAT
GGAGTTGGGAAATCTACCAACCTAGCTAAGGTAGCTTACTGGCTTCTTCA
GCACAAGGTCAGTGTTATGATGGCTGCATGTGATACATTCCGCTCTGGCG
CTGTCGAACAGTTGCGAACTCACGCACGCAGGCTCCAGGTCCCTATATTT
GAAAAGGGCTATGAAAAAGA
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