FC917868

Overview
NameFC917868
Unique NameFC917868
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length835
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC917868_ssr490 microsatellite FC917868_ssr490:490..504. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig3463 contig Ccv1_Contig3463:1..835. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC917868 vs. ExPASy Swiss-Prot
Match: PTR2_ARATH (Peptide transporter PTR2 OS=Arabidopsis thaliana GN=PTR2 PE=1 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 3.474e-52
Identity = 115/272 (42.28%), Postives = 147/272 (54.04%), Query Frame = 3
Query:   45 ISEVLEAERPLVEDDVV---------DGCVDYKGRPVNNRSKYGGWRSALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIXXXXXXXXXXXXXXXXXXXXXXXXECQNTSC-SANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPQESKLKSSFFNWWYFGMCMGTFVTLTVLNYIQDNLNWILGFGIPCILMVVALVVFLLGTKIYRYSLKGEEKSPFLRIGQV 830
            +  + E  RPL+E+ ++         DG VD+ G P   + K G W++  FI+G E  ER AYYG++ NLITYLT  L Q   +AA NV  W G   L PL GA LAD++ GRY  I                          EC    C SA   Q   FF  LYLIALG GG KPCV +FGADQFD    +E   K+SFFNW+YF + +G  V+ ++L +IQ+N  W LGFGIP + M +A+  F  GT +YR+   G   SP  RI QV
Sbjct:    1 MGSIEEEARPLIEEGLILQEVKLYAEDGSVDFNGNPPL-KEKTGNWKACPFILGNECCERLAYYGIAGNLITYLTTKLHQGNVSAATNVTTWQGTCYLTPLIGAVLADAYWGRYWTIACFSGIYFIGMSALTLSASVPALKPAECIGDFCPSATPAQYAMFFGGLYLIALGTGGIKPCVSSFGADQFDDTDSRERVRKASFFNWFYFSINIGALVSSSLLVWIQENRGWGLGFGIPTVFMGLAIASFFFGTPLYRFQKPG--GSPITRISQV 269          
BLAST of FC917868 vs. ExPASy Swiss-Prot
Match: PTR1_ARATH (Peptide transporter PTR1 OS=Arabidopsis thaliana GN=PTR1 PE=2 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 4.538e-52
Identity = 107/245 (43.67%), Postives = 134/245 (54.69%), Query Frame = 3
Query:   96 DGCVDYKGRPVNNRSKYGGWRSALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIXXXXXXXXXXXXXXXXXXXXXXXXECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPQESKLKSSFFNWWYFGMCMGTFVTLTVLNYIQDNLNWILGFGIPCILMVVALVVFLLGTKIYRYSLKGEEKSPFLRIGQV 830
            DG VD    P N + K G W++  FI+G E  ER AYYG+ +NL+ YL   L Q  ATAA NV  WSG   + PL GAF+AD++LGRY  I                           C   +C  N  Q   FF +LY+IALG GG KPCV +FGADQFD     E   KSSFFNW+YF + +G  +  TVL +IQ N+ W  GFG+P + MV+A+  F  G++ YR    G   SP  RI QV
Sbjct:   10 DGTVDIHKNPAN-KEKTGNWKACRFILGNECCERLAYYGMGTNLVNYLESRLNQGNATAANNVTNWSGTCYITPLIGAFIADAYLGRYWTIATFVFIYVSGMTLLTLSASVPGLKPGNCNADTCHPNSSQTAVFFVALYMIALGTGGIKPCVSSFGADQFDENDENEKIKKSSFFNWFYFSINVGALIAATVLVWIQMNVGWGWGFGVPTVAMVIAVCFFFFGSRFYRLQRPG--GSPLTRIFQV 251          
BLAST of FC917868 vs. ExPASy Swiss-Prot
Match: PTR3A_ARATH (Peptide transporter PTR3-A OS=Arabidopsis thaliana GN=PTR3-A PE=2 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.784e-48
Identity = 100/254 (39.37%), Postives = 140/254 (55.12%), Query Frame = 3
Query:   81 EDDVVDGCVDYKGRPVNNRSKYGGWRSALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIXXXXXXXXXXXXXXXXXXXXXXXXECQNTSCS----ANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPQESKLKSSFFNWWYFGMCMGTFVTLTVLNYIQDNLNWILGFGIPCILMVVALVVFLLGTKIYRYSLKGEEKSPFLRIGQV 830
            +D   DG VD +G PV  RS  G W++  F++  E+ ER AYYG+SSNL  Y+T  L Q T  ++ NV  W G + L P+ GA++ D+ LGRY   +I                        EC  T+      A+  Q+  FF +LY +A+G GG KP +   GADQFD   P+E   K SFFNWW F +  GT    TVL Y+QDN+ W LG+G+P + + +++ +FLLGT  YR+ L     SPF ++ +V
Sbjct:    8 DDYTKDGTVDLQGNPVR-RSIRGRWKACSFVVVYEVFERMAYYGISSNLFIYMTTKLHQGTVKSSNNVTNWVGTSWLTPILGAYVGDALLGRYITFVISCAIYFSGMMVLTLSVTIPGIKPPECSTTNVENCEKASVLQLAVFFGALYTLAIGTGGTKPNISTIGADQFDVFDPKEKTQKLSFFNWWMFSIFFGTLFANTVLVYVQDNVGWTLGYGLPTLGLAISITIFLLGTPFYRHKL--PTGSPFTKMARV 258          
BLAST of FC917868 vs. ExPASy Swiss-Prot
Match: PTR3B_ARATH (Peptide transporter PTR3-B OS=Arabidopsis thaliana GN=PTR3-B PE=2 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.670e-46
Identity = 95/254 (37.40%), Postives = 141/254 (55.51%), Query Frame = 3
Query:   81 EDDVVDGCVDYKGRPVNNRSKYGGWRSALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIXXXXXXXXXXXXXXXXXXXXXXXXECQNTSCS----ANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPQESKLKSSFFNWWYFGMCMGTFVTLTVLNYIQDNLNWILGFGIPCILMVVALVVFLLGTKIYRYSLKGEEKSPFLRIGQV 830
            +D   DG VD +G  V  RS+ G W++  F++  E+ ER AYYG+SSNL+ Y+T  L Q T  ++ NV  W G + L P+ GA++AD+  GRY   +I                        +C   +      A+  Q+  FF +LY +A+G GG KP +   GADQFD   P++   K SFFNWW F +  GTF   TVL Y+QDN+ W +G+G+  + +  ++ +FLLGT++YR+ L     SPF ++ +V
Sbjct:    8 DDYTKDGTVDLRGNRVR-RSQTGRWKACSFVVVYEVFERMAYYGISSNLVIYMTTKLHQGTVKSSNNVTNWVGTSWLTPILGAYVADAHFGRYITFVISSAIYLLGMALLTLSVSLPGLKPPKCSTANVENCEKASVIQLAVFFGALYTLAIGTGGTKPNISTIGADQFDEFDPKDKIHKHSFFNWWMFSIFFGTFFATTVLVYVQDNVGWAIGYGLSTLGLAFSIFIFLLGTRLYRHKL--PMGSPFTKMARV 258          
BLAST of FC917868 vs. ExPASy Swiss-Prot
Match: PTR5_ARATH (Peptide transporter PTR5 OS=Arabidopsis thaliana GN=PTR5 PE=2 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 3.721e-46
Identity = 102/255 (40.00%), Postives = 139/255 (54.51%), Query Frame = 3
Query:   78 VEDD----VVDGCVDYKGRPVNNRSKYGGWRSALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIXXXXXXXXXXXXXXXXXXXXXXXXECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPQESKLKSSFFNWWYFGMCMGTFVTLTVLNYIQDNLNWILGFGIPCILMVVALVVFLLGTKIYRYSLKGEEKSPFLRIGQV 830
            +EDD      DG +D   +P N ++K G W++  FI+G E  ER AYYG+S+NLI YL   +     +A+++V+ WSG     PL GAF+AD++LGRY  I                           C   +C A   Q    F +LYLIALG GG KPCV +FGADQFD    +E + KSSFFNW+YF + +G  +  +VL +IQ N+ W  G G+P + M +A+V F  G+  YR    G   SP  R+ QV
Sbjct:    1 MEDDKDIYTKDGTLDIHKKPAN-KNKTGTWKACRFILGTECCERLAYYGMSTNLINYLEKQMNMENVSASKSVSNWSGTCYATPLIGAFIADAYLGRYWTIA-SFVVIYIAGMTLLTISASVPGLTPTCSGETCHATAGQTAITFIALYLIALGTGGIKPCVSSFGADQFDDTDEKEKESKSSFFNWFYFVINVGAMIASSVLVWIQMNVGWGWGLGVPTVAMAIAVVFFFAGSNFYRLQKPG--GSPLTRMLQV 251          
BLAST of FC917868 vs. ExPASy Swiss-Prot
Match: CHL1_ARATH (Nitrate/chlorate transporter OS=Arabidopsis thaliana GN=CHL1 PE=1 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 5.754e-39
Identity = 92/237 (38.82%), Postives = 129/237 (54.43%), Query Frame = 3
Query:   84 DDVVDGCVDYKGRPVNNRSKYGGWRSALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIXXXXXXXXXXXXXXXXXXXXXXXXECQNTSCS----ANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPQESKLKSSFFNWWYFGMCMGTFVTLTVLNYIQDNLNWILGFGIPCILMVVALVVFLLGTKIYRY 782
            DD++    D++GRP + RSK GGW SA  I+ +E  ER    G+  NL+TYLTG +    ATAA  V  + G + +L L G F+AD+FLGRY  I I                         C  T+ S    A+  Q+   + +LYL ALG GG K  V  FG+DQFD   P+E    + FFN ++F + +G+ + +TVL Y+QD++    G+GI    +V+AL VFL GT  YR+
Sbjct:    9 DDILLDAWDFQGRPAD-RSKTGGWASAAMILCIEAVERLTTLGIGVNLVTYLTGTMHLGNATAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFAAIQATGVSILTLSTIIPGLRPPRCNPTTSSHCEQASGIQLTVLYLALYLTALGTGGVKASVSGFGSDQFDETEPKERSKMTYFFNRFFFCINVGSLLAVTVLVYVQDDVGRKWGYGICAFAIVLALSVFLAGTNRYRF 244          
BLAST of FC917868 vs. ExPASy Swiss-Prot
Match: PTR2X_ARATH (Probable peptide transporter At1g52190 OS=Arabidopsis thaliana GN=At1g52190 PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.738e-30
Identity = 75/233 (32.19%), Postives = 117/233 (50.21%), Query Frame = 3
Query:  147 GGWRSALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIXXXXXXXXXXXXXXXXXXXXXXXXECQNTSC-----SANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDS-QHPQESKLKSSFFNWWYFGMCMGTFVTLTVLNYIQDNLNWILGFGIPCILMVVALVVFLLGTKIYRYSLKGEEKSPFLRIGQ 827
            GG  +  FII  E  E+ A YG+  N+I YL        A     +  WS  ++  PL GAFL+DS+LGR+  I I                         C  T+      S+   Q+   + +  LI++G GG +PC  AFGADQ D+ ++P+  ++  SFF W+Y    +   +  T + YIQ++L W +GFG+P +LM++A ++F+L + +  Y  +G  KS F  + Q
Sbjct:   23 GGIITMPFIIANEAFEKVASYGLLPNMIMYLIRDYRFGVAKGTNVLFMWSAASNFTPLLGAFLSDSYLGRFLTISIASLSSFLGMVLLWLTAMLPQVKPSPCDPTAAGSHCGSSTASQLALLYSAFALISIGSGGIRPCSLAFGADQLDNKENPKNERVLESFFGWYYASSAVAVLIAFTGIVYIQEHLGWKIGFGVPAVLMLIAALLFILASPL--YVTRGVTKSLFTGLAQ 253          
BLAST of FC917868 vs. ExPASy Swiss-Prot
Match: S15A2_HUMAN (Solute carrier family 15 member 2 OS=Homo sapiens GN=SLC15A2 PE=2 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 1.288e-22
Identity = 66/212 (31.13%), Postives = 105/212 (49.53%), Query Frame = 3
Query:  159 SALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIXXXXXXXXXXXXXXXXXXXXXXXXECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPQESKLKSSFFNWWYFGMCMGTFVTLTVLNYIQDNLN------WILGFGIPCILMVVALVVFLLGTKIY 776
            S  FI+  E  ERF+YYG+ + LI Y    L  +  T+    +A+S +    P+ GA +ADS+LG+++ II                                       +     L LIALG GG KPCV AFG DQF+ +H +E   ++ +F+ +Y  +  G+ ++  +   ++ ++       + L FG+P +LMV+ALVVF +G+KIY
Sbjct:   45 SIAFIVVNEFCERFSYYGMKAVLILYFLYFLHWNEDTSTSIYHAFSSLCYFTPILGAAIADSWLGKFKTIIYLSLVYVLGHVIKSLGALPIL-----------GGQVVHTVLSLIGLSLIALGTGGIKPCVAAFGGDQFEEKHAEE---RTRYFSVFYLSINAGSLISTFITPMLRGDVQCFGEDCYALAFGVPGLLMVIALVVFAMGSKIY 242          
BLAST of FC917868 vs. ExPASy Swiss-Prot
Match: PEPT1_DROME (Peptide transporter family 1 OS=Drosophila melanogaster GN=yin PE=1 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 2.197e-22
Identity = 64/215 (29.77%), Postives = 104/215 (48.37%), Query Frame = 3
Query:  156 RSALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIXXXXXXXXXXXXXXXXXXXXXXXXECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPQESKLKSSFFNWWYFGMCMGTFVTLTVLNYIQDNLN-------WILGFGIPCILMVVALVVFLLGTKIYR 779
            +S  FII  E  ERF YYG+ + L+ YLT  L  +  TA    + ++ +  + PL GA +AD +LG+Y+ I+                         +                   L LIA+G GG KPCV AFG DQF    P +S   + FF+ +YF +  G+ ++ T    ++ +++       + L FG+P ILM+ ++++F+ G ++YR
Sbjct:   34 KSVAFIISNEFCERFNYYGMRTILVLYLTNKLGYNEETATVLFHTFTMLVYIFPLIGALIADGWLGKYKTILYLSLVYSLGAMVVSFGAVPLSGMPTKAVTV-------------VGLLLIAIGTGGIKPCVSAFGGDQFSL--PAQSFQLAKFFSLFYFAINAGSLISTTFTPILRADVHCFGDQDCFSLAFGVPAILMIFSVIIFMAGKRLYR 233          
BLAST of FC917868 vs. ExPASy Swiss-Prot
Match: S15A2_MOUSE (Solute carrier family 15 member 2 OS=Mus musculus GN=Slc15a2 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.893e-22
Identity = 66/213 (30.99%), Postives = 105/213 (49.30%), Query Frame = 3
Query:  159 SALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIXXXXXXXXXXXXXXXXXXXXXXXXECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPQESKLKSSFFNWWYFGMCMGTFVTLTVLNYIQDNLN------WILGFGIPCILMVVALVVFLLGTKIYR 779
            S  FI+  E  ERF+YYG+ + L  Y    L  +  T+    +A+S +    P+ GA +ADS+LG+++ II                                       I     L LIALG GG KPCV AFG DQF+ +H   ++ ++ +F+ +Y  +  G+ ++  +   ++ ++       + L FGIP +LMV+ALVVF +G+K+YR
Sbjct:   45 SIAFIVVNEFCERFSYYGMKAVLTLYFLYFLHWNEDTSTSVYHAFSSLCYFTPILGAAIADSWLGKFKTIIYLSLVYVLGHVFKSLGAIPIL-----------GGKMLHTILSLVGLSLIALGTGGIKPCVAAFGGDQFEEEH---AEARTRYFSVFYLSINAGSLISTFITPMLRGDVKCFGEDCYALAFGIPGLLMVLALVVFAMGSKMYR 243          
The following BLAST results are available for this feature:
BLAST of FC917868 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
PTR2_ARATH3.474e-5242.28Peptide transporter PTR2 OS=Arabidopsis thaliana G... [more]
PTR1_ARATH4.538e-5243.67Peptide transporter PTR1 OS=Arabidopsis thaliana G... [more]
PTR3A_ARATH1.784e-4839.37Peptide transporter PTR3-A OS=Arabidopsis thaliana... [more]
PTR3B_ARATH1.670e-4637.40Peptide transporter PTR3-B OS=Arabidopsis thaliana... [more]
PTR5_ARATH3.721e-4640.00Peptide transporter PTR5 OS=Arabidopsis thaliana G... [more]
CHL1_ARATH5.754e-3938.82Nitrate/chlorate transporter OS=Arabidopsis thalia... [more]
PTR2X_ARATH3.738e-3032.19Probable peptide transporter At1g52190 OS=Arabidop... [more]
S15A2_HUMAN1.288e-2231.13Solute carrier family 15 member 2 OS=Homo sapiens ... [more]
PEPT1_DROME2.197e-2229.77Peptide transporter family 1 OS=Drosophila melanog... [more]
S15A2_MOUSE4.893e-2230.99Solute carrier family 15 member 2 OS=Mus musculus ... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA27DG12RM1 IVIA1 Citrus clementina cDNA clone IC0AAA27DG12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC917868 ID=FC917868; Name=FC917868; organism=Citrus clementina; type=EST; length=835bp
CTGCAACGGAAGGGTGAAGGCCATCAGCAAAGAGAGTGATGGCGATTTCA
GAGGTGTTGGAGGCCGAAAGGCCGCTTGTAGAAGACGACGTCGTCGATGG
CTGCGTTGACTACAAAGGTCGTCCCGTCAATAACCGATCCAAATACGGCG
GATGGAGATCCGCTTTATTCATAATTGGAGTGGAAATGGCTGAGAGATTC
GCCTATTATGGAGTTTCCTCCAATCTTATAACGTATTTGACTGGGCCGCT
TGCTCAGTCGACCGCCACTGCTGCTGAAAACGTCAACGCCTGGTCTGGCG
TGGCCTCGTTGCTCCCTCTTTTTGGCGCTTTCCTTGCCGATTCTTTTCTT
GGCCGCTACCGCGCCATAATCATTGCTTCCCTTATCTACGTCCTGGGACT
GGGCTTGTTGACTTTGTCAGCTGTGTTGCTTTCGGGCAGCACTTCTGAGT
GCCAAAATACATCATGTTCTGCTAATCAGTTCCAAGTAATCTTCTTCTTC
TTCTCTCTGTATCTGATAGCACTTGGGCAAGGTGGGCATAAACCTTGCGT
TCAGGCTTTTGGTGCCGATCAGTTTGATAGTCAACACCCTCAGGAATCCA
AACTCAAAAGTTCCTTCTTCAATTGGTGGTATTTTGGAATGTGTATGGGC
ACCTTTGTGACGCTTACAGTCTTAAACTACATTCAGGACAACCTTAATTG
GATTCTTGGGTTTGGAATTCCATGTATTCTAATGGTCGTTGCACTGGTTG
TTTTCTTGCTTGGAACTAAAATTTATCGATACAGCTTAAAAGGGGAGGAG
AAAAGCCCCTTTTTGAGGATAGGTCAGGTGTTTGT
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