FC917870

Overview
NameFC917870
Unique NameFC917870
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length713
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig8188 contig Ccv1_Contig8188:1..713. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC917870 vs. ExPASy Swiss-Prot
Match: MTG1_MOUSE (Mitochondrial GTPase 1 OS=Mus musculus GN=Mtg1 PE=2 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 2.418e-21
Identity = 70/215 (32.56%), Postives = 114/215 (53.02%), Query Frame = 2
Query:    5 WYGPHMAAATRAILYRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFDQQNCPSFGVNSHNKD-NVKEFLKFLQAHVRNLRKSDYDASCDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS-LKIASHPNIYVLDTPGILPPEIHDVEVCSQLALTGAIGDSFLG 634
            W+  HMA   + +   +  VD ++EV DARIPFS     F +L    P      +LVLNKMDLA  T+ ++ +   +++   +    +  KD N+K+ +  +   +R   +  + A      +M++G+PNVGKS+L NSL +    T       + A V  +PG T+ + S +++   P +++LDTPG+L P I  VE   +LAL G + D  +G
Sbjct:   29 WFPGHMAKGLKKMQSSLKSVDCVIEVHDARIPFSGRNPLFQELLGLKP-----HLLVLNKMDLADLTEQQKIVQRLEEKGLSNVLFTNCVKDENIKQIVPKVMELIRCSYRY-HRAETPEYCIMVVGVPNVGKSSLINSLRRQHLRTG------KAARVGGEPGITRAVTSRIQVCERPLVFLLDTPGVLAPRIESVETGLKLALCGTVLDHLVG 231          
BLAST of FC917870 vs. ExPASy Swiss-Prot
Match: RBGA_BACSU (Ribosome biogenesis GTPase A OS=Bacillus subtilis GN=rbgA PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.200e-20
Identity = 69/213 (32.39%), Postives = 103/213 (48.36%), Query Frame = 2
Query:    5 WYGPHMAAATRAILYRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFL----KFLQAHVRNLRKSDYDASCDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDTPGILPPEIHDVEVCSQLALTGAIGDSFL 631
            W+  HMA A R +  ++ L+DI+ E+ DARIP SS    + +     +  RI++LNK D A     ++W   F+ Q   S  +NS N   + + +    + LQ     +R          +  +++GIPNVGKS L N L            K   A    +PG T     +K+     + +LDTPGIL P+  D  V  +LA+TGAI DS +
Sbjct:    5 WFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIED--ILKNKPRIMLLNKADKADAAVTQQWKEHFENQGIRSLSINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPR--AIRALIIGIPNVGKSTLINRL-----------AKKNIAKTGDRPGITTSQQWVKVGK--ELELLDTPGILWPKFEDELVGLRLAVTGAIKDSII 200          
BLAST of FC917870 vs. ExPASy Swiss-Prot
Match: MTG1_HUMAN (Mitochondrial GTPase 1 OS=Homo sapiens GN=MTG1 PE=2 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 1.200e-20
Identity = 71/215 (33.02%), Postives = 112/215 (52.09%), Query Frame = 2
Query:    5 WYGPHMAAATRAILYRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFDQQNCPSFGVNSHNKD-NVKEFLKFLQAHVRNLRKSDYDASCDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS-LKIASHPNIYVLDTPGILPPEIHDVEVCSQLALTGAIGDSFLG 634
            W+  HMA   + +   + LVD I+EV DARIP S     F +     P      +LVLNKMDLA  T+ ++ +   + +   +    +  KD NVK+ +  +   +    +     + +   +M++G+PNVGKS+L NSL    R     KGK     V  +PG T+ + S ++++  P +++LDTPG+L P I  VE   +LAL G + D  +G
Sbjct:   30 WFPGHMAKGLKKMQSSLKLVDCIIEVHDARIPLSGRNPLFQETLGLKP-----HLLVLNKMDLADLTEQQKIMQHLEGEGLKNVIFTNCVKDENVKQIIPMVTELIGRSHRYHRKENLE-YCIMVIGVPNVGKSSLINSL----RRQHLRKGKATR--VGGEPGITRAVMSKIQVSERPLMFLLDTPGVLAPRIESVETGLKLALCGTVLDHLVG 232          
BLAST of FC917870 vs. ExPASy Swiss-Prot
Match: MTG1_BOVIN (Mitochondrial GTPase 1 OS=Bos taurus GN=MTG1 PE=2 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 2.956e-19
Identity = 72/218 (33.03%), Postives = 112/218 (51.38%), Query Frame = 2
Query:    5 WYGPHMAAATRAILYRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFDQQNCPSFGVNSHNKD-NVKEFLKFLQAHVRN---LRKSDYDASCDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS-LKIASHPNIYVLDTPGILPPEIHDVEVCSQLALTGAIGDSFLG 634
            W+  HMA   + +   + LVD I+EV DA+IP S     F +     P      +LVLNKMDLA   + ++ I   +++        +  KD NVK+ +  +   V +     + ++   C    +M++G+PNVGKS+L NSL    R     KGK     V  +PG T+ + S +++   P +++LDTPG+L P I  VE   +LAL G + D  +G
Sbjct:   30 WFPGHMAKGLKKMQSSLRLVDCIIEVHDAQIPLSGRNPLFQETLGLKP-----HLLVLNKMDLADLKEQQKIIQHLEREGIKHVVFTNCVKDENVKQVIPTVTELVGSSYRYHRGEHVEYC----IMVIGVPNVGKSSLINSL----RRQHLRKGKATR--VGGEPGITRAVMSRIQVCERPLMFLLDTPGVLAPRIPSVETGLKLALCGTVLDHLVG 232          
BLAST of FC917870 vs. ExPASy Swiss-Prot
Match: MTG1_SCHPO (Mitochondrial GTPase 1 OS=Schizosaccharomyces pombe GN=mtg1 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.424e-13
Identity = 68/225 (30.22%), Postives = 102/225 (45.33%), Query Frame = 2
Query:    5 WYGPHMAAATRAILYRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFDQQNCPSFGVNSH---NKDNVKEFLKFLQAHV-----------RNLRKSDYDASCD-TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSL-KIASHPNIYVLDTPGILPPEIHDVEVCSQLALTGAIGDSFL 631
            WY  HM    + +       DI +EVRDARIP +S    + +    +   RI+V NK DLA     K  ++    QN      N      + +  E   F+  +V           R +R     AS +  V V  +G+PN GKS++ NSL  +    A  K K   A V   PG TK I  + ++ +  ++Y+LDTPGI+ P I   E   +L+L G + +  +
Sbjct:   17 WYPGHMNKTLKRLKNLTSSNDIFVEVRDARIPLTSRNYVMEDF--LNKKNRIIVYNKCDLADTFHTKAKVSKHRIQNLAQQFQNVECWFKETSTPEKSAFITPYVSKAPYFAKELLRLIRTLVDQASANGRVYVYFVGMPNTGKSSILNSLRNV----ALRKSK--SAIVGNYPGVTKRISEIVRLFNDMDVYMLDTPGIMTPSITKPEDMLKLSLVGCVKEGIV 233          
The following BLAST results are available for this feature:
BLAST of FC917870 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
MTG1_MOUSE2.418e-2132.56Mitochondrial GTPase 1 OS=Mus musculus GN=Mtg1 PE=... [more]
RBGA_BACSU1.200e-2032.39Ribosome biogenesis GTPase A OS=Bacillus subtilis ... [more]
MTG1_HUMAN1.200e-2033.02Mitochondrial GTPase 1 OS=Homo sapiens GN=MTG1 PE=... [more]
MTG1_BOVIN2.956e-1933.03Mitochondrial GTPase 1 OS=Bos taurus GN=MTG1 PE=2 ... [more]
MTG1_SCHPO2.424e-1330.22Mitochondrial GTPase 1 OS=Schizosaccharomyces pomb... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA94CD09RM1 IVIA1 Citrus clementina cDNA clone IC0AAA94CD09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC917870 ID=FC917870; Name=FC917870; organism=Citrus clementina; type=EST; length=713bp
AGGTTGGTACGGCCCTCACATGGCCGCAGCCACTCGTGCCATCCTTTATC
GGATGCCGTTAGTTGATATCATCCTCGAAGTCAGAGACGCTAGGATTCCA
TTTTCATCTGAGTTTGATCAATTAAGGAACCACCACCCTTTTTCTTCATC
TAGGAGAATCCTGGTTCTTAACAAGATGGACCTCGCGAGCCCAACTCAGT
TCAAGGAGTGGATCACCTTTTTCGACCAGCAAAACTGCCCTTCTTTTGGC
GTCAATTCCCATAACAAGGACAATGTCAAGGAGTTTCTTAAATTTTTACA
AGCTCATGTCAGAAATTTAAGGAAAAGTGATTATGATGCTTCTTGTGATA
CCGTAACGGTAATGCTGCTTGGGATTCCTAATGTTGGAAAGTCAGCCCTT
GCCAACTCTTTGCATCAAATCGGCAGGATTACTGCTGCAGAGAAAGGAAA
GCTAAGGCATGCAACTGTGAGTCCACAGCCTGGAGAGACAAAAGATATCT
ACAGTTTGAAGATTGCCAGCCATCCCAATATTTATGTGTTGGACACCCCA
GGCATTTTGCCTCCCGAGATCCATGATGTTGAGGTTTGCTCCCAGCTAGC
TTTAACAGGAGCAATCGGAGACAGCTTCCTTGGGGGAAAAGGAACTCGCT
CAATATTTTCTTGGCATCCTCATTTTCGGTGATGATAATAAGAAGTGGGG
CAAAGTTTTCCAT
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