FC917873

Overview
NameFC917873
Unique NameFC917873
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length895
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC917873_ssr188 microsatellite FC917873_ssr188:188..199. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig912 contig Ccv1_Contig912:8..902. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC917873 vs. ExPASy Swiss-Prot
Match: ZNHI1_HUMAN (Zinc finger HIT domain-containing protein 1 OS=Homo sapiens GN=ZNHIT1 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.228e-15
Identity = 54/165 (32.73%), Postives = 76/165 (46.06%), Query Frame = 1
Query:   43 ERRMSTRTRKVAPRMAAALASADNRTQAALARLEALENDNAGIETVEINXXXXXXXXXXXXXEGYMQKRHSKGTKRKTRQAKALEDARKAPRSFLELLHEANLESLPPHVPSYLRAAVGPPSKTSRRHFCTVCGFSANYTCVKCGMRFCCIRCQNIHDDTRCLKF 537
            E++ S R++    R     A+   R      +LEALENDN                      +   Q      T +K ++ +      +  ++F  LL E NL       P+YL A  GPPS+  +R FC VCGF + YTCV CG R+C +RC   H +TRCLK+
Sbjct:    3 EKKTSVRSQDPGQRRVLDRAARQRRINR---QLEALENDN---------FQDDPHAGLPQLGKRLPQFDDDADTGKKKKKTRGDHFKLRFRKNFQALLEEQNLSVAEG--PNYLTACAGPPSRP-QRPFCAVCGFPSPYTCVSCGARYCTVRCLGTHQETRCLKW 152          
BLAST of FC917873 vs. ExPASy Swiss-Prot
Match: ZNHI1_BOVIN (Zinc finger HIT domain-containing protein 1 OS=Bos taurus GN=ZNHIT1 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.228e-15
Identity = 54/165 (32.73%), Postives = 76/165 (46.06%), Query Frame = 1
Query:   43 ERRMSTRTRKVAPRMAAALASADNRTQAALARLEALENDNAGIETVEINXXXXXXXXXXXXXEGYMQKRHSKGTKRKTRQAKALEDARKAPRSFLELLHEANLESLPPHVPSYLRAAVGPPSKTSRRHFCTVCGFSANYTCVKCGMRFCCIRCQNIHDDTRCLKF 537
            E++ S R++    R     A+   R      +LEALENDN                      +   Q      T +K ++ +      +  ++F  LL E NL       P+YL A  GPPS+  +R FC VCGF + YTCV CG R+C +RC   H +TRCLK+
Sbjct:    3 EKKTSVRSQDPGQRRVLDRAARQRRINR---QLEALENDN---------FQDDPHAGLPQLGKRLPQFDDDADTGKKKKKTRGDHFKLRFRKNFQALLEEQNLSVAEG--PNYLTACAGPPSRP-QRPFCAVCGFPSPYTCVSCGARYCTVRCLGTHQETRCLKW 152          
BLAST of FC917873 vs. ExPASy Swiss-Prot
Match: ZNHI1_MOUSE (Zinc finger HIT domain-containing protein 1 OS=Mus musculus GN=Znhit1 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.909e-15
Identity = 53/165 (32.12%), Postives = 77/165 (46.67%), Query Frame = 1
Query:   43 ERRMSTRTRKVAPRMAAALASADNRTQAALARLEALENDNAGIETVEINXXXXXXXXXXXXXEGYMQKRHSKGTKRKTRQAKALEDARKAPRSFLELLHEANLESLPPHVPSYLRAAVGPPSKTSRRHFCTVCGFSANYTCVKCGMRFCCIRCQNIHDDTRCLKF 537
            E++ + R++    R     A+   R      +LEALENDN                      +   Q      T +K ++ +      +  ++F  LL E NL +     P+YL A  GPPS+  +R FC VCGF + YTCV CG R+C +RC   H +TRCLK+
Sbjct:    3 EKKPAVRSQDPGQRRVLDRAARQRRINR---QLEALENDN---------FQDDPHAGLPQLGKRLPQFDDDADTGKKKKKTRGDHFKLRFRKNFQALLEEQNLSA--SEGPNYLTACAGPPSRP-QRPFCAVCGFPSPYTCVSCGARYCTVRCLGTHQETRCLKW 152          
BLAST of FC917873 vs. ExPASy Swiss-Prot
Match: ZNHI1_DICDI (Zinc finger HIT domain-containing protein 1 homolog OS=Dictyostelium discoideum GN=znhit1 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.723e-13
Identity = 43/136 (31.62%), Postives = 70/136 (51.47%), Query Frame = 1
Query:  133 ARLEALENDNA----GIETVEINXXXXXXXXXXXXXEGYMQKRHSKGTKRKTRQAKALEDARKAPRSFLELLHEANLESLPPHVPSYLRAAVGPPSKTSRRHFCTVCGFSANYTCVKCGMRFCCIRCQNIHDDTRC 528
            ARLE+L++DN     G    E +                 +KR     ++K  + K++        +F ++L ++ LE+ P HVP+Y+ +    PS    RHFC++CG+   YTC +C  R+C I+C N H++TRC
Sbjct:   43 ARLESLDDDNEQQPIGSRGDEEDNDYNDDENEIVYTTPVNKKRLFIAREKKKNEKKSMN------LNFNDVLEKSYLETFPDHVPTYI-SVQSKPSIFPPRHFCSICGYIGAYTCKQCSSRYCSIKCFNYHNETRC 171          
The following BLAST results are available for this feature:
BLAST of FC917873 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
ZNHI1_HUMAN2.228e-1532.73Zinc finger HIT domain-containing protein 1 OS=Hom... [more]
ZNHI1_BOVIN2.228e-1532.73Zinc finger HIT domain-containing protein 1 OS=Bos... [more]
ZNHI1_MOUSE2.909e-1532.12Zinc finger HIT domain-containing protein 1 OS=Mus... [more]
ZNHI1_DICDI2.723e-1331.62Zinc finger HIT domain-containing protein 1 homolo... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAQ5YN10RM1 IVIA1 Citrus clementina cDNA clone KN0AAQ5YN10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC917873 ID=FC917873; Name=FC917873; organism=Citrus clementina; type=EST; length=895bp
TCGATGATTAAATTTTGAAGGAAAAAGAAAAATATGGAAGATGAACGGCG
CATGTCAACTAGAACTCGAAAAGTGGCTCCCAGAATGGCCGCCGCTCTTG
CCAGCGCCGACAATCGAACTCAGGCAGCTCTTGCTCGGCTTGAAGCACTT
GAGAATGATAATGCTGGAATTGAAACTGTTGAAATCAATGATGATGATGG
TGAAGCTTCTCTTGATGACGACGACGATGAAGGATATATGCAAAAGAGGC
ATTCGAAGGGCACAAAACGTAAAACCCGGCAAGCCAAAGCGCTTGAGGAT
GCTAGGAAGGCCCCAAGATCATTCCTTGAGCTCTTGCACGAGGCAAATCT
TGAATCCTTGCCTCCCCATGTTCCATCTTATTTGAGGGCAGCTGTGGGGC
CTCCAAGTAAAACTTCTCGCCGTCATTTCTGCACCGTTTGTGGTTTTTCT
GCCAACTACACCTGTGTCAAGTGTGGAATGCGCTTCTGTTGCATTCGTTG
CCAGAATATTCATGATGACACTCGTTGCCTCAAATTCGTTGCTTGAGCAG
TCAGAGACTTCAGCCAGTGACGTGAATTTGTACAAAGTAGAATCAAAACT
TGAAGGTTTCTTGTTCTAATTTGTTGTACAGATATTGTTAATTTGATTTT
CAATAGACAACAGCTTCTTTAGTAGAAATGCTTTGCACTGTTTCTTAATC
TTCTTCACGTGTTTATAGGCAAAGAAAAGTTTTTATCTATTTGTTCCCTA
TTTCACAGAAAATCCATCTTCTTAATTATGCTACATTCATTTTGCATGTT
CCAGGTTGTAGCAGGGTTTCTTTTTAGTCATCGACAAGTGTAATCTAATT
GAGATATGGGTGGTAGTTATCCGAGGAAGTAAATATCTTCTCATT
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